BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0025.p (238 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K9U3.1 B3K9U3_9BACI N-acylglucosamine-6-phosphate 2-epimerase ... 205 3e-51 C1PD39.1 C1PD39_BACCO N-acylglucosamine-6-phosphate 2-epimerase ... 191 5e-47 A9KIQ1.1 A9KIQ1_CLOPH N-acylglucosamine-6-phosphate 2-epimerase ... 188 4e-46 C0DA95.1 C0DA95_9CLOT Putative uncharacterized protein 182 2e-44 Q2BFK3.1 Q2BFK3_9BACI N-acetylmannosamine-6-phosphate 2-epimerase 181 7e-44 >B3K9U3.1 B3K9U3_9BACI N-acylglucosamine-6-phosphate 2-epimerase EC=5.1.3.9 Length = 235 Score = 205 bits (521), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 112/219 (51%), Positives = 141/219 (64%) Query: 8 LISYKGLVVSCQALEDEPLHGSXXXXXXXXXXXXXXXXXIRAGGLEDIRAIKEAVGLPLI 67 +I+ +GLVVSCQA E EPL G IRA G DI AIK AV +P+I Sbjct: 4 MITDRGLVVSCQAYEGEPLFGPQHMVEMAKAAVLGGAIGIRANGTADIAAIKAAVSVPVI 63 Query: 68 GLVKIRHENSEVYITPTLEDALAVHAAGADIVAIDGTGRPRPDGRSLADTIAGLKRAGAA 127 GL+K + E VYITPTLEDALAVH AGADIVA+DGT RPRPDG L + + L R G Sbjct: 64 GLLKRQIEGYPVYITPTLEDALAVHEAGADIVAMDGTRRPRPDGNKLKEVVDELIRRGIH 123 Query: 128 VMADIATFEEGVLAAERGADYVSTTLCGYTRETAGTPLPNLGLLERLTAVLTIPVVAEGG 187 VMAD++T EEG+ AA+ G Y+STTL GYT + + P++GL+ RL +PV+AEG Sbjct: 124 VMADVSTLEEGLYAADLGVHYISTTLSGYTAYSPESTKPDIGLVARLVQETRLPVIAEGR 183 Query: 188 ICQPEQAAEALRLGAAFVVVGAAITRPQWIAARYVEAMQ 226 + +AL GA FVVVG+AITRPQ I RY ++++ Sbjct: 184 FASADDMIQALNAGARFVVVGSAITRPQDITERYRKSIE 222 >C1PD39.1 C1PD39_BACCO N-acylglucosamine-6-phosphate 2-epimerase EC=5.1.3.9 Length = 222 Score = 191 bits (485), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 106/213 (49%), Positives = 131/213 (61%) Query: 14 LVVSCQALEDEPLHGSXXXXXXXXXXXXXXXXXIRAGGLEDIRAIKEAVGLPLIGLVKIR 73 L+VSCQALEDEPLH IRA EDIRAIK GLP+IG+VK Sbjct: 9 LIVSCQALEDEPLHSPFIMSKMALAAKEGGAAGIRANSAEDIRAIKAETGLPVIGIVKRD 68 Query: 74 HENSEVYITPTLEDALAVHAAGADIVAIDGTGRPRPDGRSLADTIAGLKRAGAAVMADIA 133 +E SEVYITPT ++ + A D++A+D TGR RP G +L+ I + AG VMADI+ Sbjct: 69 YEGSEVYITPTKKEIDELLAVKPDMIALDATGRKRPGGETLSGLIGYIHEAGLPVMADIS 128 Query: 134 TFEEGVLAAERGADYVSTTLCGYTRETAGTPLPNLGLLERLTAVLTIPVVAEGGICQPEQ 193 T EEG+ AA GAD VSTTL GYT + P+ LL++L LTIPV AEG P + Sbjct: 129 TEEEGLQAARLGADCVSTTLSGYTSYSPKQGEPDFALLKKLVDALTIPVFAEGHFDTPAE 188 Query: 194 AAEALRLGAAFVVVGAAITRPQWIAARYVEAMQ 226 +AL GA VVVG+AITRPQ I ++ EAM+ Sbjct: 189 VKKALEFGAFAVVVGSAITRPQLITKKFAEAMR 221 >A9KIQ1.1 A9KIQ1_CLOPH N-acylglucosamine-6-phosphate 2-epimerase EC=5.1.3.9 Length = 230 Score = 188 bits (477), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 106/216 (49%), Positives = 127/216 (58%), Gaps = 2/216 (0%) Query: 13 GLVVSCQALEDEPLHGSXXXXXXXXXXXXXXXXXIRAGGLEDIRAIKEAVGLPLIGLVKI 72 GLVVSCQAL EPL+ S IRA EDI IK+ V LP+IGL K Sbjct: 14 GLVVSCQALSTEPLYSSYIMSRMAYAAQLGGAVGIRANTPEDIIEIKKTVNLPVIGLYKQ 73 Query: 73 RHENSEVYITPTLEDALAVHAAGADIVAIDGTGRPRPDGRSLADTIAGLKRA--GAAVMA 130 E+S+VYITPT+E + AA A+I+AID T R RP G SL D ++ MA Sbjct: 74 VFEDSDVYITPTIEAVRDIVAANAEIIAIDATNRLRPHGISLDDFFKEVREMYPNQLFMA 133 Query: 131 DIATFEEGVLAAERGADYVSTTLCGYTRETAGTPLPNLGLLERLTAVLTIPVVAEGGICQ 190 D AT+EE + A E G D V TTLCGYT +T G +PN LL++L IPV+AEGGI Sbjct: 134 DCATYEEAIHAYEIGFDLVGTTLCGYTEQTKGVAIPNFELLQKLANYSKIPVIAEGGIWS 193 Query: 191 PEQAAEALRLGAAFVVVGAAITRPQWIAARYVEAMQ 226 PEQ +AL G VVG AITRP I RYV+A+Q Sbjct: 194 PEQLKQALECGVHAAVVGTAITRPMDITKRYVQAIQ 229 >C0DA95.1 C0DA95_9CLOT Putative uncharacterized protein Length = 228 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 100/219 (45%), Positives = 136/219 (62%), Gaps = 3/219 (1%) Query: 11 YKGLVVSCQALEDEPLHGSXXXXXXXXXXXXXXXXXIRAGGLEDIRAIKEAVGLPLIGLV 70 +K L+VSCQALE EPLH S IRA +EDI AIKE V LP+IG++ Sbjct: 9 HKKLIVSCQALEQEPLHSSYIMSRMAYAAMLGGAAGIRANTVEDITAIKETVDLPVIGII 68 Query: 71 KIRHENSEVYITPTLEDALAVHAAGADIVAIDGTGRPRPDGRSLADTIAGLKRA--GAAV 128 K + + V+ITPT + A+ A G +++A+D T RPRPDG SL + A ++R G Sbjct: 69 KRVYGDCPVFITPTEREVDALVACGTEVIALDATSRPRPDGVSLPELFAAIRRKYPGQLF 128 Query: 129 MADIATFEEGVLAAERGADYVSTTLCGYTRETAGTPLPNLGLLERLTAVLTIPVVAEGGI 188 MAD +T+E+ A + G D V TTL GYTRETAGT +P++ L+ RL + IPV+AEGGI Sbjct: 129 MADCSTYEDASAARDMGFDIVGTTLRGYTRETAGTEIPDMDLIARLGQTMGIPVIAEGGI 188 Query: 189 CQPEQAAEALRL-GAAFVVVGAAITRPQWIAARYVEAMQ 226 P+Q + L + G V+G AITRP I R+V+A++ Sbjct: 189 WTPQQLHDILSMDGIHAAVIGGAITRPLEITKRFVQAIE 227 >Q2BFK3.1 Q2BFK3_9BACI N-acetylmannosamine-6-phosphate 2-epimerase Length = 227 Score = 181 bits (458), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 107/221 (48%), Positives = 131/221 (59%), Gaps = 10/221 (4%) Query: 13 GLVVSCQALEDEPLHGSXXXXXXXXXXXXXXXXXIRAGGLEDIRAIKEAVGLPLIGLVKI 72 GLVVSCQALEDEPLHG IRA G+EDI+AIKE V LP+IG++K Sbjct: 8 GLVVSCQALEDEPLHGPEIMKRMADAAKRGGALGIRANGIEDIKAIKEYVDLPIIGIIKR 67 Query: 73 RHENSEVYITPTLEDALAVHAAGADIVAIDGTGRPRPDGRSLADTIAGLKRAGAAV---- 128 +E S VYITPTL++ + AG D++A+D T R RP G L A ++ A A Sbjct: 68 EYEGSSVYITPTLKEVEELAEAGVDLIAVDATSRLRPGGLELN---AFMQEAKARFPEQK 124 Query: 129 -MADIATFEEGVLAAERGADYVSTTLCGYTRETAGTPL--PNLGLLERLTAVLTIPVVAE 185 MAD AT E+ + A E G D V TT+ GYT ETAG L + L + A + +PV+AE Sbjct: 125 WMADCATVEDCIRAEELGFDCVGTTMHGYTEETAGKKLYHNDFQFLRDVLAAVNVPVIAE 184 Query: 186 GGICQPEQAAEALRLGAAFVVVGAAITRPQWIAARYVEAMQ 226 G I PE A E LR GA VVVG AITRPQ I R+V M+ Sbjct: 185 GNILTPEMAGEVLRYGAHSVVVGGAITRPQQITERFVVGME 225 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,225,253,912 Number of extensions: 47794917 Number of successful extensions: 158636 Number of sequences better than 1.0e-05: 545 Number of HSP's gapped: 157438 Number of HSP's successfully gapped: 545 Length of query: 238 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 106 Effective length of database: 1,817,122,223 Effective search space: 192614955638 Effective search space used: 192614955638 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)