BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0023.p (293 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4EM08.1 C4EM08_STRRS Carbohydrate ABC transporter membrane prot... 226 2e-57 B1DKI3.1 B1DKI3_9BACL Binding-protein-dependent transport system... 207 1e-51 C5C3K9.1 C5C3K9_9MICO Binding-protein-dependent transport system... 207 1e-51 Q2BFH7.1 Q2BFH7_9BACI Sugar ABC transporter permease 204 5e-51 B5I0S3.1 B5I0S3_9ACTO Sugar ABC transporter permease protein 197 7e-49 >C4EM08.1 C4EM08_STRRS Carbohydrate ABC transporter membrane protein 1, CUT1 family Length = 306 Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 117/285 (41%), Positives = 181/285 (63%), Gaps = 10/285 (3%) Query: 11 LFIAPALLIYLLFFAGPIFSGLYYGFTDWNGFSFKADWVGLENFREAFRDPLLLTALKNM 70 LF PALL+Y P G++Y FTDW+G +VGL NFR D ++ +L N Sbjct: 30 LFAVPALLVYAAVVLYPSIVGVFYAFTDWSGVGEDMSFVGLSNFRAILGDEQVMGSLGNT 89 Query: 71 AILSATVIVLQHSASILLAVLLDQKVKGIVWMRAVIFFPVILNTVVIGYVWSYMYAPMVG 130 +L+ ++V+Q+ +LLA+ + ++K +R V F PV+++ V++ ++W Y+Y P Sbjct: 90 LLLTVAILVVQNGVGLLLALGVHARLKSRALLRVVFFAPVVVSPVMVAFLWKYVYTPD-- 147 Query: 131 FLPKFFAAIGLEGLAGL--DWLGDPGLAIYAIAFVMVWQYTGYSMMIYLAGLQSVSGEIY 188 ++GL GL GL DWLGDP +A+++IA ++VWQY GYSM+I+LAGL+ V E++ Sbjct: 148 ------PSMGLNGLLGLEVDWLGDPSVALWSIAGMVVWQYAGYSMVIFLAGLEGVPKELH 201 Query: 189 EASSIDGAGPWNKFWRVTLPLLIPSIIVNTVLSVIGCMKMFEHVFIMTQGGPANSTQTFG 248 EA+ IDGAG +F VT PLL P++ +N +LS IG +K+F+ VF T GGP +T+T Sbjct: 202 EAAMIDGAGTLQRFRYVTWPLLAPALTINLMLSTIGGLKLFDQVFAATNGGPGYATETLS 261 Query: 249 IMIYQYAFKTSQMGYGTAMAMILSVMILAVTFVQIKLLSRLEVAN 293 ++Y+ AF + GY TA+A++L++ + AV+ +QI L EVA Sbjct: 262 TVLYKQAFVFGKFGYSTAIALVLALFVAAVSLIQISYLRSREVAQ 306 >B1DKI3.1 B1DKI3_9BACL Binding-protein-dependent transport systems inner membrane component Length = 291 Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 114/282 (40%), Positives = 174/282 (61%), Gaps = 9/282 (3%) Query: 15 PALLIYLLFFAGPIFSGLYYGFTDWNGFSFKADWVGLENFREAFRDPLLLTALKNMAILS 74 PALLIY +FF P GLYY FTDW ++G +NF + F D L+ A+KN I + Sbjct: 16 PALLIYTVFFVLPAIIGLYYSFTDWRLDRIGIKFIGFDNFNKIFTDDTLILAMKNTFIFA 75 Query: 75 ATVIVLQHSASILLAVLLDQKVKGIVWMRAVIFFPVILNTVVIGYVWSYMYAPMV---GF 131 +V ++ ++LA+ L+ ++K ++RA+ + P IL+ +VI S ++ P++ G Sbjct: 76 LATVVGKNVIGLVLAIALNMRLKSRNFLRAIFYSPSILSVLVI----SIVFTPILRTEGM 131 Query: 132 LPKFFAAIGLEGLAGLDWLGDPGLAIYAIAFVMVWQYTGYSMMIYLAGLQSVSGEIYEAS 191 + KFF AIGL L+ WL +P L I+ +A V +WQ G+ M IYLAGLQS+S E YEA+ Sbjct: 132 VNKFFDAIGLHFLSQ-AWLTNPHLVIWTVALVAIWQQAGFQMAIYLAGLQSISKEYYEAA 190 Query: 192 SIDGAGPWNKFWRVTLPLLIPSIIVNTVLSVIGCMKMFEHVFIMTQGGPANSTQTFGIMI 251 +IDGAG W F +T+PLL+P+I +N +L++IG +K+F VF++T GGP NS+Q G +I Sbjct: 191 TIDGAGAWRSFTNITVPLLLPAININLMLTLIGGLKVFSEVFVLTSGGPGNSSQVVGTII 250 Query: 252 YQYAFKTSQMGYGTAMAMILSVMILAVTFVQIKLLSRLEVAN 293 + AF G GTA+ +L +++ + + + R EV Sbjct: 251 LR-AFGEGNWGLGTAINTLLFLIVSLIAIPLLIFMRRKEVTE 291 >C5C3K9.1 C5C3K9_9MICO Binding-protein-dependent transport systems inner membrane component Length = 309 Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 109/280 (38%), Positives = 172/280 (61%), Gaps = 2/280 (0%) Query: 12 FIAPALLIYLLFFAGPIFSGLYYGFTDWNGFSFKADWVGLENFREAFRDPLLLTALKNMA 71 I PAL+ Y + P +G Y FTDW G +VGL+NF E F P +AL+N Sbjct: 30 LIVPALVFYAVVVLYPTVAGGVYAFTDWTGRRVAPQFVGLDNFVELFSAPAARSALRNTL 89 Query: 72 ILSATVIVLQHSASILLAVLLDQKVKGIVWMRAVIFFPVILNTVVIGYVWSYMYAPMVGF 131 +++ + ++Q + LA+ L + +R + F P +L V+IG++W Y+ P G Sbjct: 90 VIAVSTTIVQTLLGLALALALHSVLASRNVLRTLFFAPALLPPVIIGFLWQYILTP-AGP 148 Query: 132 LPKFFAAIGLEGLAGLDWLGDPGLAIYAIAFVMVWQYTGYSMMIYLAGLQSVSGEIYEAS 191 L AIGL GL +WLGD +A+ ++ V++WQ G +M+IYLAGLQ V E+ EA+ Sbjct: 149 LNDALEAIGLGGLTQ-NWLGDASVALASVIGVIIWQNAGLTMVIYLAGLQGVPAELLEAA 207 Query: 192 SIDGAGPWNKFWRVTLPLLIPSIIVNTVLSVIGCMKMFEHVFIMTQGGPANSTQTFGIMI 251 +IDGA W + RVT+PLLIP+ + L++IG +K+F+ V++MT GGP +T+T +++ Sbjct: 208 AIDGASRWQRLRRVTIPLLIPATTIAMSLTLIGSLKLFDQVYVMTGGGPGYATETLSVVM 267 Query: 252 YQYAFKTSQMGYGTAMAMILSVMILAVTFVQIKLLSRLEV 291 Y+ AF + + GY A+A++L++++ A FVQ++ L R EV Sbjct: 268 YKEAFVSGRYGYSAAIALVLTMIVFAFAFVQLRGLRRFEV 307 >Q2BFH7.1 Q2BFH7_9BACI Sugar ABC transporter permease Length = 291 Score = 204 bits (520), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 104/276 (37%), Positives = 171/276 (61%), Gaps = 2/276 (0%) Query: 13 IAPALLIYLLFFAGPIFSGLYYGFTDWNGFSFKADWVGLENFREAFRDPLLLTALKNMAI 72 +APALLIYL+F PI YY +WNGFS +VGL+NF + F+D L ++KN Sbjct: 15 LAPALLIYLVFAILPILQSFYYSLMEWNGFS-AMKFVGLDNFVQLFQDSLFWNSVKNNIY 73 Query: 73 LSATVIVLQHSASILLAVLLDQKVKGIVWMRAVIFFPVILNTVVIGYVWSYMYAPMVGFL 132 + + Q ++ +A+LL++K+KG+ R + F PV+L+TVVI WS ++ G + Sbjct: 74 VVLASVFGQVPIALFIALLLNRKIKGLKIFRTIGFLPVVLSTVVISLTWSLIFNSEQGLI 133 Query: 133 PKFFAAIGLEGLAGLDWLGDPGLAIYAIAFVMVWQYTGYSMMIYLAGLQSVSGEIYEASS 192 + A+GL+ LA +WLGD ++ A+ V++WQ+ G ++I+LA LQ+V E+ EA+ Sbjct: 134 NELLRAVGLDFLAQ-NWLGDTKFSMIAVLVVVIWQFVGLYLIIFLAALQNVPQEVLEAAK 192 Query: 193 IDGAGPWNKFWRVTLPLLIPSIIVNTVLSVIGCMKMFEHVFIMTQGGPANSTQTFGIMIY 252 IDGA W W++T+P++ +IIV +L++ G +K F+ +++MT GGPA+ST + ++ Sbjct: 193 IDGASEWTTTWKITIPMIWDTIIVAVILAISGSLKTFDLIYVMTHGGPAHSTDVMALYMF 252 Query: 253 QYAFKTSQMGYGTAMAMILSVMILAVTFVQIKLLSR 288 F Q GYG+A+++++ L + + KLL R Sbjct: 253 NETFSKLQYGYGSAVSVVIFFFSLILIYTVTKLLGR 288 >B5I0S3.1 B5I0S3_9ACTO Sugar ABC transporter permease protein Length = 332 Score = 197 bits (502), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 107/284 (37%), Positives = 174/284 (61%), Gaps = 3/284 (1%) Query: 12 FIAPALLIYLLFFAGPIFSGLYYGFTDWNGFSFKADWVGLENFREAFRDPLLLTALKNMA 71 F PAL++++ P+ LY F W GF +D+VG +NF + F +P+ L L Sbjct: 42 FQLPALVLFIGMVLLPMLFALYAAFFRWGGFGMPSDYVGTDNFTDLFDNPIFLGDLWRCL 101 Query: 72 ILSATVIVLQHSASILLAVLLDQKVKGIVWMRAVIFFPVILNTVVIGYVWSYMYAPMVGF 131 +L +VLQ ++ +AVLL+QK++G R + F P +L+ + G ++S ++AP G Sbjct: 102 VLVLLSLVLQLPFALAMAVLLNQKLRGRAVYRMLFFAPYVLSEAITGVLFSMVFAPDDGL 161 Query: 132 LPKFFAAIGLEGLAGLDWLGDPGLAIYAIAFVMVWQYTGYSMMIYLAGLQSVSGEIYEAS 191 A+GL+GL GL W DP + + VM W+Y G+ MM+YLAGLQS+ E+ EA+ Sbjct: 162 ADHVLGAVGLDGLGGL-WFADPSYVMATLFLVMTWKYFGFHMMLYLAGLQSIPRELTEAA 220 Query: 192 SIDGAGPWNKFWRVTLPLLIPSIIVNTVLSVIGCMKMFEHVFIMTQGGPANSTQTFGIMI 251 IDGAG W +F VTLPLL P++ ++ LSVIG +++F+ V+++TQGGP + ++T + + Sbjct: 221 LIDGAGAWQRFRNVTLPLLAPTLRISVFLSVIGAIQLFDLVWVITQGGPDHHSETMAVTM 280 Query: 252 YQYAFKTSQMGYGTAMAMIL--SVMILAVTFVQIKLLSRLEVAN 293 +QY FK Q+GY +A+++++ ++ A+ + + L LE A Sbjct: 281 FQYGFKRYQVGYASAISVVMFGICLVFALAYQRFVLRRDLEGAT 324 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.143 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,682,682,774 Number of extensions: 69983779 Number of successful extensions: 263560 Number of sequences better than 1.0e-05: 6385 Number of HSP's gapped: 254087 Number of HSP's successfully gapped: 6401 Length of query: 293 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 159 Effective length of database: 1,798,280,193 Effective search space: 285926550687 Effective search space used: 285926550687 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)