BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0022.p (413 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4G5X9.1 C4G5X9_ABIDE Putative uncharacterized protein 129 4e-28 A6LRD6.1 A6LRD6_CLOB8 Extracellular solute-binding protein, fami... 126 3e-27 A3ID90.1 A3ID90_9BACI Sugar ABC transporter, sugar-binding protein 123 3e-26 B1HYB8.1 B1HYB8_LYSSC Hypothetical ABC transporter extracellular... 119 4e-25 B8CZU5.1 B8CZU5_HALOH Extracellular solute-binding protein family 1 119 7e-25 >C4G5X9.1 C4G5X9_ABIDE Putative uncharacterized protein Length = 446 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 108/367 (29%), Positives = 172/367 (46%), Gaps = 35/367 (9%) Query: 50 VVDKFQEKYPYITIEHDKVYDQFREIIRTRIVSKSDMDMLWLFPN--QVAEFSKEDVLMD 107 V++ FQ+K P I I+ + V D +E++ TR S + DM+ +P Q +F E +L+D Sbjct: 80 VIEAFQKKNPDIVIKQNVVPDA-QEVLMTRASSDNLPDMMNHWPTDAQFVQFEDEGLLLD 138 Query: 108 ITGSPWLSN----YLDAAVKLGTVDGKTYGVPYNSQPILMFYNKTLFDQLGLSIPANWEE 163 ++ ++ N YLDA + DGK Y PYN + ++YNK F++ G ++P W+E Sbjct: 139 LSEKDYMKNIDSKYLDA---VKAKDGKNYMAPYNVNFMGVYYNKDKFEKAGYTMPTKWDE 195 Query: 164 LMAVSEKIKASGTAPMVIGSKDGWATQFI--TTSQFGLYQHENPDVFAQLASGDKKW-TD 220 L+A++++IKA G P V+ +KD W + L HE D + ++ +G++ + T Sbjct: 196 LIALAKEIKAKGETPFVLPNKDSWVVSALWSNIEARDLGSHE--DEYEKMKAGEESFETI 253 Query: 221 PEFAGYFDGMKELSDKGYLLENSVGLSYDQVAQVFKEGKAAMWPMGEWGYSENFDA--DF 278 PEF + M +L D Y E+S+ L YDQ F G+ M+ G W A DF Sbjct: 254 PEFKSSVEKMIQLLD--YANEDSLALGYDQAINDFANGEGWMFIQGSWTLPSFLSANPDF 311 Query: 279 STFELGAFPIPVNRGDQPLVTNLVSDNLLVGVSWS---KHQEEIKLFMEFVAQPEMAKIW 335 + E P N +P+ T V V + + E I F+ F E A+I+ Sbjct: 312 NV-EFAVLP---NDNGKPIATQAVDTGFCVNAKIADEPEKMEAIDKFLSFALSVEGAQIY 367 Query: 336 SDETKQAVTVKDGTSESYNPLAASLQPLIDASEAQIFPSMT----SSIEPVMFPIFQQIL 391 +D K V +E QP D +A F + + E Q +L Sbjct: 368 TDNDKSPSCVTGVKAE-----VPQFQPFFDYVKANGFEADGAYPPTGFEDTKRGKIQNVL 422 Query: 392 LKQEVDT 398 L ++VD Sbjct: 423 LDKDVDA 429 >A6LRD6.1 A6LRD6_CLOB8 Extracellular solute-binding protein, family 1 Length = 416 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 113/378 (29%), Positives = 179/378 (47%), Gaps = 29/378 (7%) Query: 46 ISQTVVDKFQEKYPYITIEHDKVYDQFREIIRTRIVSKSDM-DMLWLFPN-QVAEFSKED 103 I Q++ ++FQEK P I I + + +++TR+ +K+DM D++ L + + Sbjct: 51 ILQSLANEFQEKNPNIEISINSPANA-GTVLKTRL-AKNDMPDLVALGADVNYGALVDAN 108 Query: 104 VLMDITGSPWLSN----YLDAAVKLGTVD-GKTYGVPYNSQPILMFYNKTLFDQLGLSIP 158 L+D+T + N YLD + + D GK YGVPY + + YNK +F +LGL IP Sbjct: 109 ALVDLTNDGIIENIQKPYLDMLHGIASNDNGKIYGVPYATNADGVLYNKDIFSKLGLQIP 168 Query: 159 ANWEELMAVSEKIKASGTAPMVIGSKDGWATQF---ITTSQFGLYQHENPDVFAQLASGD 215 W+E MAVS+KIK +G P+ + KD W + S P F Sbjct: 169 KTWDEFMAVSKKIKDAGQLPLYLTLKDAWTGMCFWNVIASDL------EPSNFLADKKAG 222 Query: 216 KKWTDPEFAGYFDGMKELSDKGYLLENSVGLSYDQVAQVFKEGKAAMWPMGEWGYSENFD 275 K + D M+ + G E+ +G+SY+ F +GK+AM+ G W SE Sbjct: 223 KTTFEATHGEIVDKMENIGTLGQ--EDILGVSYNDGNAAFAQGKSAMYLQGNWAISEIKK 280 Query: 276 ADFSTFELGAFPIPVNRGDQPLVTNLVSD-NLLVGV-SWSKHQEEIKLFMEFVAQPEMAK 333 A+ LG FP+P + + P N+VS ++L G+ S SKH +E K F+EF+ + E A+ Sbjct: 281 AN-PNINLGMFPLPAS--NDPSKNNIVSGIDVLFGITSKSKHSDEAKKFIEFMTEKENAQ 337 Query: 334 IWSDETKQAVTVKDGTSESYNPLAASLQPLIDASEAQIFPSMTSSIEPVMFPIFQQILLK 393 + + VKD T + + +Q + +FP + Q K Sbjct: 338 KYIKDQFAFSAVKDVTQDDQS--VTDVQESFKNGKIGVFPDHYYPSSFDAASLVQGFYSK 395 Query: 394 QEVDTAKLLEQMQTAQDK 411 + D A+ L+Q+ T DK Sbjct: 396 K--DKAEFLKQLDTEYDK 411 >A3ID90.1 A3ID90_9BACI Sugar ABC transporter, sugar-binding protein Length = 437 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 87/307 (28%), Positives = 149/307 (48%), Gaps = 9/307 (2%) Query: 48 QTVVDKFQEKYPYITIEHDKVYD-QFREIIRTRIVSKSDMDMLWLFPNQVA-EFSKEDVL 105 + V+ F E++P I I + + ++ ++ T + + D+ L P + ++ + Sbjct: 68 EKVIALFNEQHPEIHISFNPTKNTEYNTVLNTALQAGEGPDIFHLRPYAAGLKLAEAGYV 127 Query: 106 MDITGSPWLSNYLDAAVKLGT-VDGKTYGVPYNSQPILMFYNKTLFDQLGLSIPANWEEL 164 I G L+++ + A+ DG YGVP N FYNK +F L IP WEE Sbjct: 128 EKINGLNGLASFPEEALLASRDEDGNQYGVPINLSSTQFFYNKKIFKDNNLEIPTTWEEF 187 Query: 165 MAVSEKIKASGTAPMVIGSKDGWATQFITTSQFGLYQHENPDVFAQLASGDKKWTDPEFA 224 +A+++++ G P+ +G+K+GW + G +E D + + +G+K +TD +F Sbjct: 188 IALNDQLLEKGITPIAMGTKEGWLLSLL-HGIVGPAIYEGNDFYQAVLAGEKDFTDAQFI 246 Query: 225 GYFDGMKELSDKGYLLENSVGLSYDQVAQVFKEGKAAMWPMGEWGYSENFDADFSTFELG 284 M +L K Y NS GL D + +F AAM+P+G W + + ELG Sbjct: 247 ESIQVMNDL--KKYFPANSEGLGMDDIRTLFALEDAAMFPLGSWEIPVVLEMN-PDLELG 303 Query: 285 AFPIPVNRGDQPLVTNLVSDNLLVGVSWSKHQEEIKLFMEFVAQPEMAKIWSDETKQAVT 344 FPIP ++G Q VT V + + + SK+ E K+F+EF+ E +++ E Sbjct: 304 YFPIP-SKGGQKTVTTWVDGSFAINAN-SKNIEAAKVFLEFLTTKEFGELFVKEFSMISA 361 Query: 345 VKDGTSE 351 + D TS+ Sbjct: 362 IPDITSD 368 >B1HYB8.1 B1HYB8_LYSSC Hypothetical ABC transporter extracellular-binding protein yurO Length = 437 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 82/294 (27%), Positives = 145/294 (49%), Gaps = 9/294 (3%) Query: 48 QTVVDKFQEKYPYITIEHDKVYD-QFREIIRTRIVSKSDMDMLWLFPNQVA-EFSKEDVL 105 + V++ F E++P I I + + ++ ++ T + + D+ L P + ++ + Sbjct: 68 EKVIELFNEQHPEIQISFNPTKNTEYNTVLNTALQAGEGPDIFHLRPYAAGLKLAEAGYV 127 Query: 106 MDITGSPWLSNYLDAAVKLGT-VDGKTYGVPYNSQPILMFYNKTLFDQLGLSIPANWEEL 164 I G L ++ + A+ DG YGVP N FYNK +F L IP WE Sbjct: 128 EKINGLNGLPSFPEEALLASRDEDGNQYGVPINLSSTQFFYNKKIFKDHNLEIPTTWEGF 187 Query: 165 MAVSEKIKASGTAPMVIGSKDGWATQFITTSQFGLYQHENPDVFAQLASGDKKWTDPEFA 224 +A+++++ G P+ +G+K+GW + G +E D + + +G+K +TD +F Sbjct: 188 IALNDQLLEKGITPIAMGTKEGWLLSLL-HGIVGPAIYEGNDFYQAVLAGEKDFTDAQFI 246 Query: 225 GYFDGMKELSDKGYLLENSVGLSYDQVAQVFKEGKAAMWPMGEWGYSENFDADFSTFELG 284 M +L K Y NS GL D + +F +AAM+P+G W + + +LG Sbjct: 247 ESIQVMNDL--KKYFPANSEGLGMDDIRTLFALEEAAMFPLGSWEIPVVLEMN-PDLDLG 303 Query: 285 AFPIPVNRGDQPLVTNLVSDNLLVGVSWSKHQEEIKLFMEFVAQPEMAKIWSDE 338 FPIP ++G Q VT V + + + SK++E K+F+EF+ E +++ E Sbjct: 304 YFPIP-SKGGQKTVTTWVDGSFAINAN-SKNKEAAKVFLEFLTTKEFGELFVKE 355 >B8CZU5.1 B8CZU5_HALOH Extracellular solute-binding protein family 1 Length = 417 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 90/337 (26%), Positives = 162/337 (48%), Gaps = 29/337 (8%) Query: 48 QTVVDKFQEKYPYITIE-HDKVYDQFREIIRTRIVSKSDMDML-WLFPNQVAEFSKEDVL 105 + V+ F+E +P I + ++ F++ +R + S + D++ W N+ F + ++ Sbjct: 45 EDVIKAFEEAHPDIDVRVSTTAHEDFKKALRIWLSSDNPPDVITWFAGNRAKYFINKGLI 104 Query: 106 MDITGSPW----LSNYLDAAVK-LGTVDGKTYGVPYNSQPILMFYNKTLFDQLGLSIPAN 160 M IT W L N A + + V+GK Y +PYN MFY K++FD+ GL P Sbjct: 105 MAITDV-WEEADLYNKFPRAFRSISFVNGKAYFLPYNWYWWGMFYRKSIFDKYGLEEPRT 163 Query: 161 WEELMAVSEKIKASGTAPMVIGSKDGWATQFITTSQFGLYQHEN-----PDVFAQLASGD 215 W+E + V E +K +G P+ IG+K W G + + N P+ +L G Sbjct: 164 WDEFLDVCETLKQNGITPITIGTKYRWTAT-------GWFDYLNMRVNGPEFHIRLMEGK 216 Query: 216 KKWTDPEFAGYFDGMKELSDKGYLLENSVGLSYDQVAQVFKEGKAAMWPMGEW---GYSE 272 +K+ DP F+ ++L D+GY ++N+ S+ + + +G+AAM+ MG++ E Sbjct: 217 EKYNDPRVKKVFEYWRQLLDRGYFVDNAAAYSWQEGVRFMVKGEAAMYLMGQFILDAVPE 276 Query: 273 NFDADFSTFELGAFPIPVNRGDQPLVTNLVSDNLLVGVSWSKHQEEIKLFMEFVAQPEMA 332 D L F P+ D P+ + +D ++ +K+ E K F++F+A E Sbjct: 277 EVAKD-----LDFFRFPIINEDVPIGEDTPTDGFMIPKK-AKNPELAKEFLKFLASREGQ 330 Query: 333 KIWSDETKQAVTVKDGTSESYNPLAASLQPLIDASEA 369 I+ ++T + + +SY PL +I ++A Sbjct: 331 MIFIEKTGRIGVNNEIPMDSYPPLTQKGVKMIQGTDA 367 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.133 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,344,228,143 Number of extensions: 96817230 Number of successful extensions: 256834 Number of sequences better than 1.0e-05: 1311 Number of HSP's gapped: 256565 Number of HSP's successfully gapped: 1311 Length of query: 413 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 275 Effective length of database: 1,760,596,133 Effective search space: 484163936575 Effective search space used: 484163936575 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)