BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0014.p (358 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q929K9.1 Q929K9_LISIN Lin2266 protein 562 e-158 A0AKR5.1 A0AKR5_LISW6 Complete genome 560 e-158 Q4ESX6.1 Q4ESX6_LISMO Oxidoreductase, Gfo/Idh/MocA family 558 e-157 B8DFE9.1 B8DFE9_LISMH Oxidoreductase, Gfo/Idh/MocA family 558 e-157 Q71XK3.1 Q71XK3_LISMF Oxidoreductase, Gfo/Idh/MocA family 557 e-157 >Q929K9.1 Q929K9_LISIN Lin2266 protein Length = 358 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 271/358 (75%), Positives = 302/358 (84%) Query: 1 MTLKXXXXXXXXXANGKHMPALQKVEGAVMVAFCDIVPERAEKAKAEFGNESAAVYNDYK 60 MTLK ANGKHMP+L K E A MVAFCDIV E+AE A EFG+E+A+VY +Y Sbjct: 1 MTLKVGIIGCGGIANGKHMPSLLKAEKAEMVAFCDIVLEKAEAAAKEFGSENASVYTNYV 60 Query: 61 ELLKDASIDVIHVCTPNISHAEISIAAMEAGKHVMCEKPMAKTTAEAQAMIDASVRTGKK 120 ELL+D SIDVIHVCTPNISHAEISIAAMEAGKHVMCEKPMAKTTAEA++MI+A+ RTGKK Sbjct: 61 ELLQDKSIDVIHVCTPNISHAEISIAAMEAGKHVMCEKPMAKTTAEAKSMIEAANRTGKK 120 Query: 121 LTIGYQNRFRADSAYLHTVCENNGLGEXXXXXXXXXXXXXVPTWGVFLDEEAQGGGPLID 180 LTIGYQNRFR DS YLH VCEN LG+ VPTWGVFLDEEAQGGGPLID Sbjct: 121 LTIGYQNRFRKDSDYLHQVCENGELGDIYYAKAKAIRRRAVPTWGVFLDEEAQGGGPLID 180 Query: 181 IGTHALDLTLWMMDNYKPKYAVGNAYHKLSGRKNAANAWGPWDPEKFTVEDSAIGFITME 240 IGTHALDLTLWMMDNYKPKY VGN+YHKL+ ++NAANAWG WDP KFTVEDSA GFITME Sbjct: 181 IGTHALDLTLWMMDNYKPKYVVGNSYHKLAKKENAANAWGSWDPSKFTVEDSAFGFITME 240 Query: 241 NGATIVLEASWALNTLDVGEARTVLCGTEGGADMEKGLRINGEEYGKTYEKHIGLDAAGV 300 NGATIVLEASWALNTLDVGEART L GTEGGADME GLRINGE + + YEK I L+A GV Sbjct: 241 NGATIVLEASWALNTLDVGEARTSLSGTEGGADMEDGLRINGEAHSQMYEKKIQLEAGGV 300 Query: 301 DFYDGAGDDPAVAEAKQWIESIVNNTEPVVKPEQALVVTRILEAIYKSSETGMPVFFD 358 DFYDG GDDPA+ EA+QW+E+I+N+T+PVVKPEQALVVT+ILEAIY+SS+TG PV+F+ Sbjct: 301 DFYDGTGDDPALIEAEQWLEAILNDTDPVVKPEQALVVTQILEAIYESSKTGQPVYFN 358 >A0AKR5.1 A0AKR5_LISW6 Complete genome Length = 358 Score = 560 bits (1444), Expect = e-158, Method: Compositional matrix adjust. Identities = 270/358 (75%), Positives = 301/358 (84%) Query: 1 MTLKXXXXXXXXXANGKHMPALQKVEGAVMVAFCDIVPERAEKAKAEFGNESAAVYNDYK 60 MTLK ANGKHMP+L K E A MVAFCDIV E+AE A EFG E+A+VY +Y Sbjct: 1 MTLKVGIIGCGGIANGKHMPSLFKAEKAEMVAFCDIVLEKAEAAAKEFGAENASVYTNYM 60 Query: 61 ELLKDASIDVIHVCTPNISHAEISIAAMEAGKHVMCEKPMAKTTAEAQAMIDASVRTGKK 120 ELL+D SIDVIHVCTPNISHAEISIAAMEAGKHVMCEKPMAKTTAEA++MI+AS RTG+K Sbjct: 61 ELLQDKSIDVIHVCTPNISHAEISIAAMEAGKHVMCEKPMAKTTAEAKSMIEASERTGRK 120 Query: 121 LTIGYQNRFRADSAYLHTVCENNGLGEXXXXXXXXXXXXXVPTWGVFLDEEAQGGGPLID 180 LTIGYQNRFR DS YLH VCEN LG+ VPTWGVFLDEEAQGGGPLID Sbjct: 121 LTIGYQNRFRKDSDYLHQVCENGELGDIYYAKAKAIRRRAVPTWGVFLDEEAQGGGPLID 180 Query: 181 IGTHALDLTLWMMDNYKPKYAVGNAYHKLSGRKNAANAWGPWDPEKFTVEDSAIGFITME 240 IGTHALDLTLWMMDNYKPKY VGN+YHKL+ ++NAANAWG WDP KFTVEDSA GFITME Sbjct: 181 IGTHALDLTLWMMDNYKPKYVVGNSYHKLAKKENAANAWGSWDPNKFTVEDSAFGFITME 240 Query: 241 NGATIVLEASWALNTLDVGEARTVLCGTEGGADMEKGLRINGEEYGKTYEKHIGLDAAGV 300 NGATIVLEASWALNTLDVGEART L GTEGGADME GLRINGE + + +EK I L+A GV Sbjct: 241 NGATIVLEASWALNTLDVGEARTSLSGTEGGADMEDGLRINGEAHSQMFEKKIQLEAGGV 300 Query: 301 DFYDGAGDDPAVAEAKQWIESIVNNTEPVVKPEQALVVTRILEAIYKSSETGMPVFFD 358 DFYDG GDDPA+ EA+QW+E+I+N+T+PVVKPEQALVVT+ILEAIY+SS+TG PV+F+ Sbjct: 301 DFYDGTGDDPALIEAEQWLEAIINDTDPVVKPEQALVVTQILEAIYESSKTGQPVYFN 358 >Q4ESX6.1 Q4ESX6_LISMO Oxidoreductase, Gfo/Idh/MocA family Length = 358 Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust. Identities = 270/358 (75%), Positives = 299/358 (83%) Query: 1 MTLKXXXXXXXXXANGKHMPALQKVEGAVMVAFCDIVPERAEKAKAEFGNESAAVYNDYK 60 MTLK ANGKHMP+L K E A MVAFCDIV E+AE A EFG E+A+VY +Y Sbjct: 1 MTLKVGIIGCGGIANGKHMPSLLKAEKAEMVAFCDIVLEKAEAAAKEFGGENASVYTNYV 60 Query: 61 ELLKDASIDVIHVCTPNISHAEISIAAMEAGKHVMCEKPMAKTTAEAQAMIDASVRTGKK 120 ELL+D SIDVIHVCTPNISHAEISIAAMEAGKHVMCEKPMAKTTAEA++MI+A+ RTGKK Sbjct: 61 ELLQDKSIDVIHVCTPNISHAEISIAAMEAGKHVMCEKPMAKTTAEAKSMIEAAERTGKK 120 Query: 121 LTIGYQNRFRADSAYLHTVCENNGLGEXXXXXXXXXXXXXVPTWGVFLDEEAQGGGPLID 180 LTIGYQNRFR DS YLH VCEN LG+ VPTWGVFLDEEAQGGGPLID Sbjct: 121 LTIGYQNRFRKDSDYLHQVCENGELGDIYYAKAKAIRRRAVPTWGVFLDEEAQGGGPLID 180 Query: 181 IGTHALDLTLWMMDNYKPKYAVGNAYHKLSGRKNAANAWGPWDPEKFTVEDSAIGFITME 240 IGTHALDLTLWMMDNYKPKY VGN+YHKL+ ++NAANAWG WDP KFTVEDSA GFITME Sbjct: 181 IGTHALDLTLWMMDNYKPKYVVGNSYHKLAKKENAANAWGSWDPSKFTVEDSAFGFITME 240 Query: 241 NGATIVLEASWALNTLDVGEARTVLCGTEGGADMEKGLRINGEEYGKTYEKHIGLDAAGV 300 NGATIVLEASWALNTLDVGEART L GTEGGADME GLRINGE + + YEK I L+A GV Sbjct: 241 NGATIVLEASWALNTLDVGEARTSLSGTEGGADMEDGLRINGEAHSQMYEKKIQLEAGGV 300 Query: 301 DFYDGAGDDPAVAEAKQWIESIVNNTEPVVKPEQALVVTRILEAIYKSSETGMPVFFD 358 DFYDG GDDPA+ EA+QW+ +I NNT+PVVKPEQALVVT+ILEAIY+SS+TG P++F+ Sbjct: 301 DFYDGTGDDPALIEAEQWLAAIENNTDPVVKPEQALVVTQILEAIYESSKTGQPIYFN 358 >B8DFE9.1 B8DFE9_LISMH Oxidoreductase, Gfo/Idh/MocA family Length = 358 Score = 558 bits (1437), Expect = e-157, Method: Compositional matrix adjust. Identities = 270/358 (75%), Positives = 299/358 (83%) Query: 1 MTLKXXXXXXXXXANGKHMPALQKVEGAVMVAFCDIVPERAEKAKAEFGNESAAVYNDYK 60 MTLK ANGKHMP+L K E A MVAFCDIV E+AE A EFG E+A+VY +Y Sbjct: 1 MTLKVGIIGCGGIANGKHMPSLLKAEKAEMVAFCDIVLEKAEAAAKEFGGENASVYTNYV 60 Query: 61 ELLKDASIDVIHVCTPNISHAEISIAAMEAGKHVMCEKPMAKTTAEAQAMIDASVRTGKK 120 ELL+D SIDVIHVCTPNISHAEISIAAMEAGKHVMCEKPMAKTTAEA++MI+A+ RTGKK Sbjct: 61 ELLQDKSIDVIHVCTPNISHAEISIAAMEAGKHVMCEKPMAKTTAEAKSMIEAAERTGKK 120 Query: 121 LTIGYQNRFRADSAYLHTVCENNGLGEXXXXXXXXXXXXXVPTWGVFLDEEAQGGGPLID 180 LTIGYQNRFR DS YLH VCEN LG+ VPTWGVFLDEEAQGGGPLID Sbjct: 121 LTIGYQNRFRKDSDYLHQVCENGELGDIYYAKAKAIRRRAVPTWGVFLDEEAQGGGPLID 180 Query: 181 IGTHALDLTLWMMDNYKPKYAVGNAYHKLSGRKNAANAWGPWDPEKFTVEDSAIGFITME 240 IGTHALDLTLWMMDNYKPKY VGN+YH+L+ ++NAANAWG WDP KFTVEDSA GFITME Sbjct: 181 IGTHALDLTLWMMDNYKPKYVVGNSYHQLAKKENAANAWGSWDPSKFTVEDSAFGFITME 240 Query: 241 NGATIVLEASWALNTLDVGEARTVLCGTEGGADMEKGLRINGEEYGKTYEKHIGLDAAGV 300 NGATIVLEASWALNTLDVGEART L GTEGGADME GLRINGE + + YEK I L+A GV Sbjct: 241 NGATIVLEASWALNTLDVGEARTSLSGTEGGADMEDGLRINGEAHSQMYEKKIQLEAGGV 300 Query: 301 DFYDGAGDDPAVAEAKQWIESIVNNTEPVVKPEQALVVTRILEAIYKSSETGMPVFFD 358 DFYDG GDDPA+ EA+QW+ +I NNT+PVVKPEQALVVT+ILEAIY+SS+TG PV+F+ Sbjct: 301 DFYDGTGDDPALIEAEQWLAAIENNTDPVVKPEQALVVTQILEAIYESSKTGQPVYFN 358 >Q71XK3.1 Q71XK3_LISMF Oxidoreductase, Gfo/Idh/MocA family Length = 358 Score = 557 bits (1436), Expect = e-157, Method: Compositional matrix adjust. Identities = 270/358 (75%), Positives = 298/358 (83%) Query: 1 MTLKXXXXXXXXXANGKHMPALQKVEGAVMVAFCDIVPERAEKAKAEFGNESAAVYNDYK 60 MTLK ANGKHMP+L K E A MVAFCDIV E+AE A EFG+E+A+VY Y Sbjct: 1 MTLKVGIIGCGGIANGKHMPSLLKAEKAEMVAFCDIVLEKAEAAAKEFGSENASVYTSYI 60 Query: 61 ELLKDASIDVIHVCTPNISHAEISIAAMEAGKHVMCEKPMAKTTAEAQAMIDASVRTGKK 120 ELL+D SIDVIHVCTPNISHAEISIAAMEAGKHVMCEKPMAKTT EA++MI+A+ RTGKK Sbjct: 61 ELLQDKSIDVIHVCTPNISHAEISIAAMEAGKHVMCEKPMAKTTEEAKSMIEAANRTGKK 120 Query: 121 LTIGYQNRFRADSAYLHTVCENNGLGEXXXXXXXXXXXXXVPTWGVFLDEEAQGGGPLID 180 LTIGYQNRFR DS YLH VCEN LG+ VPTWGVFLDEEAQGGGPLID Sbjct: 121 LTIGYQNRFRKDSDYLHQVCENGELGDIYYAKAKAIRRRAVPTWGVFLDEEAQGGGPLID 180 Query: 181 IGTHALDLTLWMMDNYKPKYAVGNAYHKLSGRKNAANAWGPWDPEKFTVEDSAIGFITME 240 IGTHALDLTLWMMDNYKPKY VGN+YHKL+ ++NAANAWG WDP KFTVEDSA GFITME Sbjct: 181 IGTHALDLTLWMMDNYKPKYVVGNSYHKLAKKENAANAWGSWDPNKFTVEDSAFGFITME 240 Query: 241 NGATIVLEASWALNTLDVGEARTVLCGTEGGADMEKGLRINGEEYGKTYEKHIGLDAAGV 300 NGATIVLEASWALNTLDVGEART L GTEGGADME GLRINGE + + YEK I L+A GV Sbjct: 241 NGATIVLEASWALNTLDVGEARTSLSGTEGGADMEDGLRINGEAHSQMYEKKIQLEAGGV 300 Query: 301 DFYDGAGDDPAVAEAKQWIESIVNNTEPVVKPEQALVVTRILEAIYKSSETGMPVFFD 358 DFYDG GDDPA+ EA+QW+E+I NT+PVVKPEQALVVT+ILEAIY+SS+TG PV+F+ Sbjct: 301 DFYDGTGDDPALIEAEQWLEAIEKNTDPVVKPEQALVVTQILEAIYESSKTGQPVYFN 358 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.132 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,053,947,967 Number of extensions: 84036997 Number of successful extensions: 202675 Number of sequences better than 1.0e-05: 3821 Number of HSP's gapped: 200219 Number of HSP's successfully gapped: 3821 Length of query: 358 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 221 Effective length of database: 1,770,017,148 Effective search space: 391173789708 Effective search space used: 391173789708 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 132 (55.5 bits)