BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0013.p (425 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q929K8.1 Q929K8_LISIN Lin2267 protein 377 e-102 B8DFE8.1 B8DFE8_LISMH Transcriptional regulator, AraC family 376 e-102 O52494.1 O52494_LISMO XylS/AraC family transcriptional regulator... 376 e-102 Q4ESX5.1 Q4ESX5_LISMO Transcriptional regulator, AraC family 376 e-102 Q71XK2.1 Q71XK2_LISMF Transcriptional regulator, AraC family 375 e-102 >Q929K8.1 Q929K8_LISIN Lin2267 protein Length = 292 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 175/292 (59%), Positives = 221/292 (75%) Query: 111 MSIYLELPDVDKHFPFRSLICGGDELCYPHWHKEIEIIYVTKGRLNLGINDTPIRMEQGE 170 MS YLE+P+++K FPFRS + G+ L YPHWHKEIEIIY KG LNLG+ND PI++ +GE Sbjct: 1 MSEYLEIPELNKAFPFRSFVNEGEVLVYPHWHKEIEIIYALKGSLNLGVNDMPIQLNEGE 60 Query: 171 VQFINGGDVHYFLASPESERVVIQFDLNLFQEVAALGSSGYSLRDLFTEMEHSSPSWPEA 230 +Q INGGDVHYFLASP SER+VIQFDL+LFQE + +LR++ TEM H S WPE Sbjct: 61 IQIINGGDVHYFLASPNSERIVIQFDLSLFQEEMQMDGQNGTLREMLTEMAHLSREWPEE 120 Query: 231 ATAKVISLIESIYEEDTQRREGYAYLIKARMFELLTVILREIPKNRTQRQPKFSEDTLTQ 290 TAKV SLI +I+ E + G Y++KA + ++ +I REIP+ +TQ SE + + Sbjct: 121 TTAKVQSLIRNIHLESSNDSPGKHYILKADLLAIIGLIYREIPQKKTQPDSVISEKAVLK 180 Query: 291 SRETMERLERIFAYVELHYQKSISLNEVARYMGFSPYYFTKLFKRNTGMTFVAFLNEYRL 350 S+ET+++L++IF+YVE HYQ+ +SL EVA Y GFS YYFTK FKRNTGMTFV FLN+YRL Sbjct: 181 SKETLQKLDQIFSYVEKHYQEPVSLQEVADYTGFSTYYFTKFFKRNTGMTFVTFLNDYRL 240 Query: 351 NKAKWILLNEDLPMSAVAEAAGFGSVKTFHHFFKEATGISPLKYHKTIFRNN 402 NKAKW+LLNE P++ VAE AGF SVKTFHH FK A G++PLKY KTI+ NN Sbjct: 241 NKAKWMLLNEAFPVTEVAELAGFSSVKTFHHAFKRAMGVAPLKYRKTIYGNN 292 >B8DFE8.1 B8DFE8_LISMH Transcriptional regulator, AraC family Length = 292 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 175/292 (59%), Positives = 223/292 (76%) Query: 111 MSIYLELPDVDKHFPFRSLICGGDELCYPHWHKEIEIIYVTKGRLNLGINDTPIRMEQGE 170 MS YLE+P+++K FPFRS + G+ L YPHWHKEIEIIY KG LNLG+ND PI++++GE Sbjct: 1 MSEYLEIPELNKAFPFRSFVNEGEVLVYPHWHKEIEIIYALKGSLNLGVNDMPIQLKEGE 60 Query: 171 VQFINGGDVHYFLASPESERVVIQFDLNLFQEVAALGSSGYSLRDLFTEMEHSSPSWPEA 230 +Q INGGDVHYFLASP SERVVIQFDL+LFQE + +LR++ TEM H S WPE Sbjct: 61 IQVINGGDVHYFLASPSSERVVIQFDLSLFQEEMQMDDQMQTLREMLTEMAHLSREWPEE 120 Query: 231 ATAKVISLIESIYEEDTQRREGYAYLIKARMFELLTVILREIPKNRTQRQPKFSEDTLTQ 290 AK+ SLI +I+EE + + G Y++KA + ++ +I REIP+ +TQ SE+ + + Sbjct: 121 TVAKMQSLIMNIHEESSGEKPGKHYILKADLLAIIGLIYREIPQIKTQPDSVISEEAVLK 180 Query: 291 SRETMERLERIFAYVELHYQKSISLNEVARYMGFSPYYFTKLFKRNTGMTFVAFLNEYRL 350 S+ET+ +L++IF+YVE HYQ+ +SL EVA Y GFS YYFTK FKRNTGMTFV FLN+YRL Sbjct: 181 SQETLHKLDQIFSYVEKHYQEPVSLQEVANYTGFSTYYFTKFFKRNTGMTFVTFLNDYRL 240 Query: 351 NKAKWILLNEDLPMSAVAEAAGFGSVKTFHHFFKEATGISPLKYHKTIFRNN 402 NKAKW+LLNE P++ VAE AGF SVKTFHH FK A G++PLKY KTI+ NN Sbjct: 241 NKAKWMLLNEAFPVTEVAELAGFSSVKTFHHAFKRAMGVAPLKYRKTIYGNN 292 >O52494.1 O52494_LISMO XylS/AraC family transcriptional regulatory protein homolog Length = 292 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 175/292 (59%), Positives = 222/292 (76%) Query: 111 MSIYLELPDVDKHFPFRSLICGGDELCYPHWHKEIEIIYVTKGRLNLGINDTPIRMEQGE 170 MS YLE+P+++K FPFRS + G+ L YPHWHKEIEIIY KG LNLGIND PI++++GE Sbjct: 1 MSEYLEIPELNKAFPFRSFVNEGEVLVYPHWHKEIEIIYALKGSLNLGINDMPIQLKEGE 60 Query: 171 VQFINGGDVHYFLASPESERVVIQFDLNLFQEVAALGSSGYSLRDLFTEMEHSSPSWPEA 230 +Q INGGDVHYFLASP SER+VIQFDL+LFQE + +LR++ TEM H S WPE Sbjct: 61 IQVINGGDVHYFLASPSSERIVIQFDLSLFQEEMQMDDKMQTLREMLTEMAHLSREWPEE 120 Query: 231 ATAKVISLIESIYEEDTQRREGYAYLIKARMFELLTVILREIPKNRTQRQPKFSEDTLTQ 290 AK+ SLI +I+ E + + G Y++KA + ++ +I REIP+ +TQ SED + + Sbjct: 121 TVAKMQSLIMNIHSESSGEKPGKHYILKADLLAIIGLIYREIPQIKTQPDSVISEDAVLK 180 Query: 291 SRETMERLERIFAYVELHYQKSISLNEVARYMGFSPYYFTKLFKRNTGMTFVAFLNEYRL 350 S+ET+ +L++IF+YVE HYQ+ +SL EVA Y GFS YYFTK FKRNTGMTFV FLN+YRL Sbjct: 181 SQETLHKLDQIFSYVEKHYQEPVSLQEVANYTGFSTYYFTKFFKRNTGMTFVTFLNDYRL 240 Query: 351 NKAKWILLNEDLPMSAVAEAAGFGSVKTFHHFFKEATGISPLKYHKTIFRNN 402 NKAKW+LLNE P++ VAE AGF SVKTFHH FK A G++PLKY KTI+ NN Sbjct: 241 NKAKWMLLNEAFPVTEVAELAGFSSVKTFHHAFKRAMGVAPLKYRKTIYGNN 292 >Q4ESX5.1 Q4ESX5_LISMO Transcriptional regulator, AraC family Length = 292 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 175/292 (59%), Positives = 222/292 (76%) Query: 111 MSIYLELPDVDKHFPFRSLICGGDELCYPHWHKEIEIIYVTKGRLNLGINDTPIRMEQGE 170 MS YLE+P+++K FPFRS + G+ L YPHWHKEIEIIY KG LNLGIND PI++++GE Sbjct: 1 MSEYLEIPELNKAFPFRSFVNEGEVLVYPHWHKEIEIIYALKGSLNLGINDMPIQLKEGE 60 Query: 171 VQFINGGDVHYFLASPESERVVIQFDLNLFQEVAALGSSGYSLRDLFTEMEHSSPSWPEA 230 +Q INGGDVHYFLASP SER+VIQFDL+LFQE + +LR++ TEM H S WPE Sbjct: 61 IQVINGGDVHYFLASPSSERIVIQFDLSLFQEEMQMDEKMQTLREMLTEMAHLSREWPEE 120 Query: 231 ATAKVISLIESIYEEDTQRREGYAYLIKARMFELLTVILREIPKNRTQRQPKFSEDTLTQ 290 AK+ SLI +I+ E + + G Y++KA + ++ +I REIP+ +TQ SED + + Sbjct: 121 TVAKMQSLIMNIHSESSGEKPGKHYILKADLLAIIGLIYREIPQIKTQPDSVISEDAVLK 180 Query: 291 SRETMERLERIFAYVELHYQKSISLNEVARYMGFSPYYFTKLFKRNTGMTFVAFLNEYRL 350 S+ET+ +L++IF+YVE HYQ+ +SL EVA Y GFS YYFTK FKRNTGMTFV FLN+YRL Sbjct: 181 SQETLHKLDQIFSYVEKHYQEPVSLQEVANYTGFSTYYFTKFFKRNTGMTFVTFLNDYRL 240 Query: 351 NKAKWILLNEDLPMSAVAEAAGFGSVKTFHHFFKEATGISPLKYHKTIFRNN 402 NKAKW+LLNE P++ VAE AGF SVKTFHH FK A G++PLKY KTI+ NN Sbjct: 241 NKAKWMLLNEAFPVTEVAELAGFSSVKTFHHAFKRAMGVAPLKYRKTIYGNN 292 >Q71XK2.1 Q71XK2_LISMF Transcriptional regulator, AraC family Length = 292 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 175/292 (59%), Positives = 222/292 (76%) Query: 111 MSIYLELPDVDKHFPFRSLICGGDELCYPHWHKEIEIIYVTKGRLNLGINDTPIRMEQGE 170 MS YLE+P+++K FPFRS I G+ L YPHWHKEIEIIY KG LNLG+ND PI++++GE Sbjct: 1 MSEYLEIPELNKAFPFRSFINEGEVLVYPHWHKEIEIIYALKGSLNLGVNDMPIQLKEGE 60 Query: 171 VQFINGGDVHYFLASPESERVVIQFDLNLFQEVAALGSSGYSLRDLFTEMEHSSPSWPEA 230 +Q INGGDVHYFLASP SER+VIQFDL+LFQE + +LR++ TEM H S WPE Sbjct: 61 IQVINGGDVHYFLASPSSERIVIQFDLSLFQEEMQMDGQMQTLREMLTEMAHLSREWPEE 120 Query: 231 ATAKVISLIESIYEEDTQRREGYAYLIKARMFELLTVILREIPKNRTQRQPKFSEDTLTQ 290 AK+ SLI +I+ E + + G Y++KA + ++ +I REIP+ +TQ SED + + Sbjct: 121 TVAKMQSLIMNIHSESSGEKPGKHYILKADLLAIIGLIYREIPQIKTQPDSVISEDAVLK 180 Query: 291 SRETMERLERIFAYVELHYQKSISLNEVARYMGFSPYYFTKLFKRNTGMTFVAFLNEYRL 350 S+ET+ +L++IF+YVE HYQ+ +SL EVA Y GFS YYFTK FKRNTGMTFV FLN+YRL Sbjct: 181 SQETLHKLDQIFSYVEKHYQEPVSLQEVADYTGFSTYYFTKFFKRNTGMTFVTFLNDYRL 240 Query: 351 NKAKWILLNEDLPMSAVAEAAGFGSVKTFHHFFKEATGISPLKYHKTIFRNN 402 NKAKW+LLNE P++ VAE AGF SVKTFHH FK A G++PLKY KTI+ NN Sbjct: 241 NKAKWMLLNEAFPVTEVAELAGFSSVKTFHHAFKRAMGVAPLKYRKTIYGNN 292 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,127,092,976 Number of extensions: 97897790 Number of successful extensions: 197764 Number of sequences better than 1.0e-05: 3409 Number of HSP's gapped: 197500 Number of HSP's successfully gapped: 3409 Length of query: 425 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 287 Effective length of database: 1,760,596,133 Effective search space: 505291090171 Effective search space used: 505291090171 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)