BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0012.p (334 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D5V9.1 B1D5V9_9BACL Transcriptional regulator, LacI family EC=... 433 e-120 B8D0R3.1 B8D0R3_HALOH Transcriptional regulator, LacI family 381 e-104 A6CSL1.1 A6CSL1_9BACI Catabolite control protein A, glucose-resi... 375 e-102 Q9KCQ3.1 Q9KCQ3_BACHD Glucose-resistance amylase regulator 355 5e-96 Q2S8C2.1 Q2S8C2_HAHCH Transcriptional regulator 353 1e-95 >B1D5V9.1 B1D5V9_9BACL Transcriptional regulator, LacI family EC=5.1.1.1 Length = 335 Score = 433 bits (1114), Expect = e-120, Method: Compositional matrix adjust. Identities = 205/333 (61%), Positives = 270/333 (81%) Query: 1 MNPTIKDVAQKANVSIATVSRVLNNLTGYSDKTKQKVNQAIKELGYQPNAIARGLINKRT 60 M PTI+DVA++ANVSIATVSRVLN L+GYSDKTKQKV + I+++GY PNAIAR L N+RT Sbjct: 1 MIPTIRDVAREANVSIATVSRVLNGLSGYSDKTKQKVIKTIEDMGYHPNAIARYLNNRRT 60 Query: 61 QTIGVMFPKVSSAFSSDLLHGIDEFAHDSNYSVVVCNTDNDGKRTMKYLQLLREKQVDGI 120 QTIGVMFP V+S F+S +L GI+E+A + YSV+VCNT DG RTMKYLQ+LRE+Q+DGI Sbjct: 61 QTIGVMFPAVASEFASAVLQGIEEYALERGYSVLVCNTAVDGNRTMKYLQVLRERQIDGI 120 Query: 121 IFSSEVLSKEYYEVLESMKIPVVLVSSQTDFAKVPYVKVDDYQAVYDAIQFLISKGHRKI 180 IF+SEVL EY ++L++M++P+VLVSS+ + KVP+VKVDD QA YDA+ +LI KGH+ I Sbjct: 121 IFASEVLKHEYKQMLDTMQVPIVLVSSENEDTKVPFVKVDDRQASYDAVSYLIDKGHKDI 180 Query: 181 AMISGTKGDPIAGTPRVQGYRKALEANGIAFDSSRLVYGDFSFESGSRAMEALLRKAGEV 240 AMI+GT DPIAG PR+QGY+ AL GI F SR+ YGDF ++SG AME LL + Sbjct: 181 AMIAGTAEDPIAGIPRLQGYKDALHDKGIPFRGSRVAYGDFHYDSGKAAMETLLEHERGI 240 Query: 241 TAVFAASDEMAIGALSSALKHGLNVPEDISIMGYDDLKPAQMVTPPLTTVRQPLYEMGKI 300 TAVFAASDEMA+GA+++A++ G+ VPED+S++GYD+++ ++MV P LTTV QPL ++G+ Sbjct: 241 TAVFAASDEMAVGAMNAAMEKGIRVPEDLSVIGYDNIRLSRMVYPALTTVGQPLLQLGRD 300 Query: 301 ASEKLIGMIETGEIAANRIMAHSIVERQTVRTL 333 A++K+I MIETG+I + I+ H IVERQTV+ L Sbjct: 301 AADKVITMIETGKIVPSLIVPHEIVERQTVKDL 333 >B8D0R3.1 B8D0R3_HALOH Transcriptional regulator, LacI family Length = 332 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/331 (54%), Positives = 250/331 (75%), Gaps = 1/331 (0%) Query: 1 MNPTIKDVAQKANVSIATVSRVLNNLTGYSDKTKQKVNQAIKELGYQPNAIARGLINKRT 60 M PTIKDVA+KANVS+ATVSRVLNN GYS +T++KV +AI ELGY PNA+ARGL+ KRT Sbjct: 1 MKPTIKDVARKANVSVATVSRVLNNQPGYSVETEKKVLEAIDELGYHPNALARGLVGKRT 60 Query: 61 QTIGVMFPKVSSAFSSDLLHGIDEFAHDSNYSVVVCNTDNDGKRTMKYLQLLREKQVDGI 120 +T+GV+ P++S+ SS +++GI++ AH +++SV++CNTDNDG++TM YL +LREK+VDGI Sbjct: 61 KTLGVLIPRISNMVSSQIMNGIEDAAHKNDHSVIICNTDNDGQKTMVYLDVLREKRVDGI 120 Query: 121 IFSSEVLSKEYYEVLESMKIPVVLVSSQTDFAKVPYVKVDDYQAVYDAIQFLISKGHRKI 180 I SE+L++EY L +K+PV+L+S+ + + P++KV+D QA Y A ++LISKGH+ I Sbjct: 121 IVVSEMLTEEYANKLVELKVPVILISTIDETGQFPHIKVNDEQAAYQATEYLISKGHKNI 180 Query: 181 AMISGTKGDPIAGTPRVQGYRKALEANGIAFDSSRLVYGDFSFESGSRAMEALLRKAGEV 240 AMISGT D +AG PR+ GY+KAL NG+ +V+GDF F+SG ME LL + Sbjct: 181 AMISGTPEDMVAGKPRLDGYKKALRENGLPVKEENIVFGDFWFDSGKECMERLLNNNQGI 240 Query: 241 TAVFAASDEMAIGALSSALKHGLNVPEDISIMGYDDLKPAQMVTPPLTTVRQPLYEMGKI 300 TA+F ASDEMA GALS+A K G+ VPEDISI+G+D+ + A+M PPLTTV QP Y+MG Sbjct: 241 TAIFVASDEMAAGALSTAYKSGIRVPEDISIIGFDNTQLAEMTIPPLTTVSQPFYQMGYK 300 Query: 301 ASEKLIGMIETGEIAANRIMAHSIVERQTVR 331 + L+ I+ E+ + I+ H IVER+TV+ Sbjct: 301 GLKLLLKAIKGKEVNS-AILPHVIVERETVK 330 >A6CSL1.1 A6CSL1_9BACI Catabolite control protein A, glucose-resistance amylase regulator Length = 337 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/331 (53%), Positives = 249/331 (75%), Gaps = 1/331 (0%) Query: 4 TIKDVAQKANVSIATVSRVLNNLTGYSDKTKQKVNQAIKELGYQPNAIARGLINKRTQTI 63 TIKDVA+KANVSIATVSRV+N+L GY TK+KV AI+EL YQPN +AR LINK+++TI Sbjct: 6 TIKDVAKKANVSIATVSRVINDLGGYGAATKEKVLNAIQELNYQPNGLARSLINKKSETI 65 Query: 64 GVMFPKVSSAFSSDLLHGIDEFAHDSNYSVVVCNTDNDGKRTMKYLQLLREKQVDGIIFS 123 V+FP VS+ FSS +L G+++ H SV+VCNT + G++T+KYL++L+EK++DGIIF Sbjct: 66 AVLFPSVSNMFSSSILKGVEDLVHQRGSSVIVCNTASKGEKTLKYLKVLQEKRIDGIIFV 125 Query: 124 SEVLSKEYYEVLESMKIPVVLVSSQTDFAKVPYVKVDDYQAVYDAIQFLISKGHRKIAMI 183 SEV++ EYYE L +M +P+VLVS+++ +PYVKV+D A Y A ++LI KGHR+I M+ Sbjct: 126 SEVITDEYYEFLSNMNVPIVLVSTESYRYSLPYVKVNDRHAAYSATEYLIEKGHRRIGMV 185 Query: 184 SGTKGDPIAGTPRVQGYRKALEANGIAFDSSRLVYG-DFSFESGSRAMEALLRKAGEVTA 242 SG D IAG PR++G++ AL+++GI + +V FSFE G + + L+ ++TA Sbjct: 186 SGNPSDMIAGQPRMEGFKDALKSHGIQVEEKSIVTSRGFSFEDGLQGLMRLMSSTTDLTA 245 Query: 243 VFAASDEMAIGALSSALKHGLNVPEDISIMGYDDLKPAQMVTPPLTTVRQPLYEMGKIAS 302 VF ASDEMA+GALS+A + G+ VP+D+SI+GYD+L +M PPLTTV QPL EMG+ A+ Sbjct: 246 VFLASDEMAVGALSAAYQMGIKVPDDLSIIGYDNLPLGEMSIPPLTTVAQPLEEMGEKAA 305 Query: 303 EKLIGMIETGEIAANRIMAHSIVERQTVRTL 333 L M+ETGE A +RI+ HSI+ERQ+V+ + Sbjct: 306 SMLFKMLETGETAESRIIGHSIIERQSVKEI 336 >Q9KCQ3.1 Q9KCQ3_BACHD Glucose-resistance amylase regulator Length = 343 Score = 355 bits (910), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 173/333 (51%), Positives = 238/333 (71%), Gaps = 2/333 (0%) Query: 1 MN-PTIKDVAQKANVSIATVSRVLNNLTGYSDKTKQKVNQAIKELGYQPNAIARGLINKR 59 MN PTIKDVA++ANVSIATVSR+LN GYS+KTKQ V + I+++GY PNA+ARGLINK+ Sbjct: 1 MNRPTIKDVAREANVSIATVSRILNKGVGYSEKTKQHVLETIEKMGYHPNAVARGLINKK 60 Query: 60 TQTIGVMFPKVSSAFSSDLLHGIDEFAHDSNYSVVVCNTDNDGKRTMKYLQLLREKQVDG 119 T +IGV+FP VS S+ +L GI+E A SV+VCNT +D K+TM YL L+EKQVDG Sbjct: 61 TDSIGVLFPNVSGLISAQILQGIEEVAQSHGISVIVCNTASDHKKTMDYLTFLQEKQVDG 120 Query: 120 IIFSSEVLSKEYYEVLESMKIPVVLVSSQTDFAKVPYVKVDDYQAVYDAIQFLISKGHRK 179 ++F S++L+K+Y E ++ M +P++ +S+ ++ VPYVKVDD A YDA+++LI KGH Sbjct: 121 LLFISQLLTKDYREFIKKMGVPIITISAFSETNDVPYVKVDDEAASYDAVRYLIEKGHTD 180 Query: 180 IAMISGTKGDPIAGTPRVQGYRKALEANGIAFDSSRLVYGD-FSFESGSRAMEALLRKAG 238 I MISG DP+AG PR+QGY++AL + F +++ + F FE G A + LL+ Sbjct: 181 IGMISGPPTDPLAGHPRIQGYKRALREADLPFIETKMTWHKGFYFEDGQVAFQKLLKSHP 240 Query: 239 EVTAVFAASDEMAIGALSSALKHGLNVPEDISIMGYDDLKPAQMVTPPLTTVRQPLYEMG 298 +TA+FAASDE+AI A+SSA G+ VP +S++GYDD K A+M PPLTTV QP EMG Sbjct: 241 SITALFAASDELAISAVSSAYHLGIRVPHQLSVIGYDDTKLAKMSIPPLTTVSQPFEEMG 300 Query: 299 KIASEKLIGMIETGEIAANRIMAHSIVERQTVR 331 A++KLI I++ E + M H I ER++V+ Sbjct: 301 AQATKKLIDSIQSREPNTSLTMPHRIAERESVK 333 >Q2S8C2.1 Q2S8C2_HAHCH Transcriptional regulator Length = 339 Score = 353 bits (905), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 173/339 (51%), Positives = 242/339 (71%), Gaps = 6/339 (1%) Query: 1 MNPTIKDVAQKANVSIATVSRVLNNLTGYSDKTKQKVNQAIKELGYQPNAIARGLINKRT 60 M TIKDVA++ VSIATVSRV+N L GYS+ T++KV AI E+G++PNA+ARGL++K+T Sbjct: 1 MKTTIKDVARRTGVSIATVSRVINGLGGYSNDTRKKVLSAIDEMGFRPNAVARGLVSKKT 60 Query: 61 QTIGVMFPKVSSAFSSDLLHGIDEFAHDSNYSVVVCNTDNDGKRTMKYLQLLREKQVDGI 120 TIGVM P VS ++++L GI+ A + YSV+VCNT+ G R+ +Y++ L+EKQVDG+ Sbjct: 61 HTIGVMLPDVSGMLAAEILKGIESVAKEQRYSVIVCNTNYSGDRSQEYVRTLKEKQVDGV 120 Query: 121 IFSSEVLSKEYYEVLESMKIPVVLVSSQTDFAKVPYVKVDDYQAVYDAIQFLISKGHRKI 180 + SE ++ E + L S+ +PVVL+S+ + PYVKVDD QA Y A+ LI KGHR+I Sbjct: 121 LAVSEYMTPEKSKALLSLNLPVVLISTLSYSYPFPYVKVDDKQAAYSAVCHLIDKGHRRI 180 Query: 181 AMISGTKGDPIAGTPRVQGYRKALEANGIAFDSS----RLVYGDFSFESGSRAMEALLR- 235 AMISG + D IAG PR++GY +AL +G++ D S R + F F SG+ ME LLR Sbjct: 181 AMISGDRADLIAGAPRIEGYVQALRDHGLSVDESLIRYRAEFESFGFHSGALCMEGLLRD 240 Query: 236 KAGEVTAVFAASDEMAIGALSSALKHGLNVPEDISIMGYDDLKPAQMVTPPLTTVRQPLY 295 K G+ +AVFAASDE+A+GALS A +HG+ +P+D+SI+ YDD + A+M TPPLT + QPL+ Sbjct: 241 KPGQFSAVFAASDELAMGALSCAYRHGVRIPDDLSIIAYDDTRIAEMATPPLTALHQPLF 300 Query: 296 EMGKIASEKLIGMIETGEIAANR-IMAHSIVERQTVRTL 333 MG A+E L+ M G + A+ I+ H I+ER++VR L Sbjct: 301 AMGSRAAEMLLDMSAAGTLEADSVIIPHKIIERESVRAL 339 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.132 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,754,081,201 Number of extensions: 67876560 Number of successful extensions: 243747 Number of sequences better than 1.0e-05: 9659 Number of HSP's gapped: 228009 Number of HSP's successfully gapped: 9693 Length of query: 334 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 198 Effective length of database: 1,779,438,163 Effective search space: 352328756274 Effective search space used: 352328756274 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)