BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0011.p (420 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K501.1 B3K501_9BACI Extracellular solute-binding protein family 1 483 e-134 A6CSL2.1 A6CSL2_9BACI Sugar ABC transporter substrate-binding pr... 404 e-110 A6LRD6.1 A6LRD6_CLOB8 Extracellular solute-binding protein, fami... 363 1e-98 B2UXQ5.1 B2UXQ5_CLOBA Sugar ABC transporter substrate-binding pr... 343 2e-92 B2THZ5.1 B2THZ5_CLOBB Sugar ABC transporter substrate-binding pr... 335 4e-90 >B3K501.1 B3K501_9BACI Extracellular solute-binding protein family 1 Length = 406 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 225/418 (53%), Positives = 298/418 (71%), Gaps = 13/418 (3%) Query: 3 KTMKPVTVSLLAMSLLSACGNNSGSNAATDDGGNAASGEKVKIEFFQNKTEAKATFDKLV 62 K K + L+ + +L+ACG A +D G +V+IEFFQNK EAK +FD L+ Sbjct: 2 KLAKWIAACLMTVWILTACG-------AQEDSG------RVQIEFFQNKPEAKGSFDALI 48 Query: 63 AQFNAANPDIVVSQINPPDAETVLKTRAAKQDLPDVIGLGATDTYKTLSASGLFEDFTGD 122 +FN + +I V Q+NPPDAETVLKTR K D+PD+IG+GATDTY L+ SG+F D T + Sbjct: 49 EKFNESQSEIKVVQVNPPDAETVLKTRVVKNDIPDIIGMGATDTYSLLAQSGIFMDLTDN 108 Query: 123 PLVSSIQPAYVKMLNDLTGSSELNGIPFSANASGVIYNKAMFKEADVAVPTTWDEFIAAA 182 PL+S + YV+ML D+ G E+ GIP+S NA+GV+YNK +FKE ++VP TWDE +A A Sbjct: 109 PLLSRVDETYVQMLKDVAGMDEVTGIPYSTNANGVMYNKEIFKELGLSVPKTWDELLATA 168 Query: 183 QKFKDSGKYAFYLTLKDSWTSLTPFNSLEPSILGTDFFKKRTEGSVTFSDSFREIAEKQL 242 QK KD+G+ FY T KD W ++ PFN+L ++ G +F+ R EG+VTF++ +REIAEKQL Sbjct: 169 QKAKDAGRIPFYFTYKDDWQTVLPFNALASNLEGIEFYMDRREGTVTFAEKYREIAEKQL 228 Query: 243 KLTEFAQKDIFGKGYNDGNTAFAKGESAMYLQGVWAIPEIMKANPSLELGVFPFPATNDP 302 L ++ D FGK Y DGN FA+GESAMY+QG WAIPEI KANP +G FP P + P Sbjct: 229 ALMDYGHGDNFGKNYADGNRDFARGESAMYIQGTWAIPEIRKANPDAPIGFFPLPTGDRP 288 Query: 303 AKNKVISGVDTLLTISKDSKHKEEAKKFVEFLLQPENVTAYITEQKAFPAVKGVTQNDPS 362 +NK+ISGVDTLL IS+DSKHK+EA++F++FLL+PEN YITEQ F V+GV Q DP+ Sbjct: 289 EENKLISGVDTLLAISEDSKHKKEAQRFIQFLLEPENSKQYITEQTLFSTVEGVKQEDPA 348 Query: 363 TDGFKEAFTSGNLADFADHYIPGAMKVDTIIQSFLNKKDIDAYLKQLDTEWDKVANRK 420 G + DFADHYIP A++++++IQSFL +DID YLK+LDTEWDKVA+R+ Sbjct: 349 VAELLPYLERGQVIDFADHYIPAAVQLNSVIQSFLQNRDIDGYLKKLDTEWDKVADRR 406 >A6CSL2.1 A6CSL2_9BACI Sugar ABC transporter substrate-binding protein Length = 412 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 197/420 (46%), Positives = 275/420 (65%), Gaps = 13/420 (3%) Query: 2 KKTMKPVTVSLLAMSLLSACGNNSGSNAATDDGGNAASGEKVKIEFFQNKTEAKATFDKL 61 KK ++L S+L+ CG GG+ AS KVK+E F NK+E+ T+ L Sbjct: 4 KKIAGLTATAILGASILAGCG-----------GGDEASDGKVKLELFSNKSESINTYKDL 52 Query: 62 VAQFNAANPDIVVSQINPPDAETVLKTRAAKQDLPDVIGLGATDTYKTLSASGLFEDFTG 121 + +F + NPDI + PP+AETVLK+R K DLPD++ +G TY L+ +G+ DF+ Sbjct: 53 IKKFESENPDIDIELNAPPEAETVLKSRLTKNDLPDIMSIGGNATYGELARAGVLNDFSD 112 Query: 122 DPLVSSIQPAYVKMLNDLTGSSE--LNGIPFSANASGVIYNKAMFKEADVAVPTTWDEFI 179 + IQPAY++M+ L G + + GIP++ NA+ VIYNKA F+E V +P TWDEFI Sbjct: 113 SEITDKIQPAYLEMIGKLVGDEKEGVYGIPYATNANAVIYNKAKFEELGVEIPKTWDEFI 172 Query: 180 AAAQKFKDSGKYAFYLTLKDSWTSLTPFNSLEPSILGTDFFKKRTEGSVTFSDSFREIAE 239 A A+K K +G+ Y TLKD+WT++ P+NS+ + DF ++ G +F + ++++AE Sbjct: 173 AIAEKAKAAGETPIYFTLKDAWTAMIPWNSIAANAAPEDFASQKNAGEASFQEDYQDVAE 232 Query: 240 KQLKLTEFAQKDIFGKGYNDGNTAFAKGESAMYLQGVWAIPEIMKANPSLELGVFPFPAT 299 K L L E+ KD GK Y DGNTAFAKGES MYLQG WAIPEI KANP +ELGVF P T Sbjct: 233 KMLTLLEYGHKDNMGKAYGDGNTAFAKGESVMYLQGNWAIPEIKKANPDIELGVFAMPVT 292 Query: 300 NDPAKNKVISGVDTLLTISKDSKHKEEAKKFVEFLLQPENVTAYITEQKAFPAVKGVTQN 359 N+P +N+++SGVD LLT ++ ++H EEA+KF++F++Q EN +YI EQ AF A++GV Q Sbjct: 293 NEPDQNRLVSGVDVLLTTTESTEHPEEAQKFIDFMIQEENAKSYIDEQAAFSAIEGVYQE 352 Query: 360 DPSTDGFKEAFTSGNLADFADHYIPGAMKVDTIIQSFLNKKDIDAYLKQLDTEWDKVANR 419 DP +G K F +G + F DHY P M + +IQ FL KKD D +L ++D EW+KV NR Sbjct: 353 DPVMEGIKTNFETGAITSFPDHYYPAGMGAENLIQEFLIKKDTDKFLNKIDKEWEKVQNR 412 >A6LRD6.1 A6LRD6_CLOB8 Extracellular solute-binding protein, family 1 Length = 416 Score = 363 bits (933), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 181/421 (42%), Positives = 265/421 (62%), Gaps = 13/421 (3%) Query: 3 KTMKPVTVS-LLAMSLLSACGNNSGSNAATDDGGNAASGEKVKIEFFQNKTEAKATFDKL 61 K + +T+S ++ SLL+ CG+ GS T++G KVK+E F K E K L Sbjct: 6 KLLMSITISAVIGTSLLAGCGSKGGS---TENG-------KVKLELFSTKAENKTILQSL 55 Query: 62 VAQFNAANPDIVVSQINPPDAETVLKTRAAKQDLPDVIGLGATDTYKTLSASGLFEDFTG 121 +F NP+I +S +P +A TVLKTR AK D+PD++ LGA Y L + D T Sbjct: 56 ANEFQEKNPNIEISINSPANAGTVLKTRLAKNDMPDLVALGADVNYGALVDANALVDLTN 115 Query: 122 DPLVSSIQPAYVKMLNDLTGS--SELNGIPFSANASGVIYNKAMFKEADVAVPTTWDEFI 179 D ++ +IQ Y+ ML+ + + ++ G+P++ NA GV+YNK +F + + +P TWDEF+ Sbjct: 116 DGIIENIQKPYLDMLHGIASNDNGKIYGVPYATNADGVLYNKDIFSKLGLQIPKTWDEFM 175 Query: 180 AAAQKFKDSGKYAFYLTLKDSWTSLTPFNSLEPSILGTDFFKKRTEGSVTFSDSFREIAE 239 A ++K KD+G+ YLTLKD+WT + +N + + ++F + G TF + EI + Sbjct: 176 AVSKKIKDAGQLPLYLTLKDAWTGMCFWNVIASDLEPSNFLADKKAGKTTFEATHGEIVD 235 Query: 240 KQLKLTEFAQKDIFGKGYNDGNTAFAKGESAMYLQGVWAIPEIMKANPSLELGVFPFPAT 299 K + Q+DI G YNDGN AFA+G+SAMYLQG WAI EI KANP++ LG+FP PA+ Sbjct: 236 KMENIGTLGQEDILGVSYNDGNAAFAQGKSAMYLQGNWAISEIKKANPNINLGMFPLPAS 295 Query: 300 NDPAKNKVISGVDTLLTISKDSKHKEEAKKFVEFLLQPENVTAYITEQKAFPAVKGVTQN 359 NDP+KN ++SG+D L I+ SKH +EAKKF+EF+ + EN YI +Q AF AVK VTQ+ Sbjct: 296 NDPSKNNIVSGIDVLFGITSKSKHSDEAKKFIEFMTEKENAQKYIKDQFAFSAVKDVTQD 355 Query: 360 DPSTDGFKEAFTSGNLADFADHYIPGAMKVDTIIQSFLNKKDIDAYLKQLDTEWDKVANR 419 D S +E+F +G + F DHY P + +++Q F +KKD +LKQLDTE+DK ++ Sbjct: 356 DQSVTDVQESFKNGKIGVFPDHYYPSSFDAASLVQGFYSKKDKAEFLKQLDTEYDKANSK 415 Query: 420 K 420 + Sbjct: 416 Q 416 >B2UXQ5.1 B2UXQ5_CLOBA Sugar ABC transporter substrate-binding protein Length = 426 Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 172/417 (41%), Positives = 250/417 (59%), Gaps = 13/417 (3%) Query: 2 KKTMKPVTVSLLAMSLLSACGNNSGSNAATDDGGNAASGEKVKIEFFQNKTEAKATFDKL 61 K + +T+ + + SLL+ C +N N DG K ++E F +K EA TF Sbjct: 17 KILISCLTICIFSTSLLTGCKSN---NVENKDG-------KQQVEVFLSKAEAINTFKNF 66 Query: 62 VAQFNAANPDIVVSQINPPDAETVLKTRAAKQDLPDVIGLGATDTYKTLSASGLFEDFTG 121 +F NPDI V +P TVLKTR K D+PD++ + TY +G+ ED + Sbjct: 67 EEKFEKENPDIDVVISSPAQPMTVLKTRLVKNDVPDILTIAGEMTYGDFVDAGILEDLSN 126 Query: 122 DP-LVSSIQPAYVKMLNDLT--GSSELNGIPFSANASGVIYNKAMFKEADVAVPTTWDEF 178 + ++ IQPAY+ +L L ++ L GIP++ NA GV+YNK +FK+ D+ +PTTWDEF Sbjct: 127 EEEIIDRIQPAYINVLKSLEFEPNNTLCGIPYACNAGGVVYNKEIFKKLDLTIPTTWDEF 186 Query: 179 IAAAQKFKDSGKYAFYLTLKDSWTSLTPFNSLEPSILGTDFFKKRTEGSVTFSDSFREIA 238 I +K K +G FY TLKD+WT++ +N++ + DFF KR + VTF D ++ +A Sbjct: 187 IKVTEKIKKAGITPFYFTLKDAWTAMPAWNAITANTESEDFFIKRRKNEVTFRDEYKPVA 246 Query: 239 EKQLKLTEFAQKDIFGKGYNDGNTAFAKGESAMYLQGVWAIPEIMKANPSLELGVFPFPA 298 EK KL E+ D FG GYNDGN +FA+G +AM +QG W IPEI+K NP + LG+F P Sbjct: 247 EKLSKLLEYGHNDNFGIGYNDGNVSFAQGNAAMMIQGNWVIPEILKINPDINLGMFVLPT 306 Query: 299 TNDPAKNKVISGVDTLLTISKDSKHKEEAKKFVEFLLQPENVTAYITEQKAFPAVKGVTQ 358 ND +KN V+SG+D L + KDS +K+ A KF+ F+++ ENV Y EQ A PA+K + Q Sbjct: 307 NNDSSKNSVVSGIDLLFAVPKDSNNKDAAVKFLNFMIKNENVEQYAKEQFAIPAIKDMYQ 366 Query: 359 NDPSTDGFKEAFTSGNLADFADHYIPGAMKVDTIIQSFLNKKDIDAYLKQLDTEWDK 415 D + + F +G + DF DH+ P +M+V + Q++L KDID L LD W++ Sbjct: 367 KDKTVEDLNPYFKNGMVLDFPDHHYPASMQVGDLAQAYLFDKDIDKLLDSLDDRWNR 423 >B2THZ5.1 B2THZ5_CLOBB Sugar ABC transporter substrate-binding protein Length = 414 Score = 335 bits (860), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 170/417 (40%), Positives = 249/417 (59%), Gaps = 13/417 (3%) Query: 2 KKTMKPVTVSLLAMSLLSACGNNSGSNAATDDGGNAASGEKVKIEFFQNKTEAKATFDKL 61 K + +T+ + + SLL+ C +N N DG K ++E F +K EA TF Sbjct: 5 KILISCLTICIFSTSLLTGCKSN---NVKNKDG-------KQQVEVFLSKAEAINTFKNF 54 Query: 62 VAQFNAANPDIVVSQINPPDAETVLKTRAAKQDLPDVIGLGATDTYKTLSASGLFEDFTG 121 +F NPDI V +P TVLKTR K D+PD++ + Y +G+ ED + Sbjct: 55 EEKFEEQNPDIDVVISSPAQPMTVLKTRLVKNDVPDILTIAGEMNYGDFVDAGILEDLSN 114 Query: 122 DP-LVSSIQPAYVKMLNDLTGSSE--LNGIPFSANASGVIYNKAMFKEADVAVPTTWDEF 178 + ++ IQPAYV +L L S L GIP++ NA GV+YNK +F++ + VPTTWDEF Sbjct: 115 EKDIIDRIQPAYVNVLKSLEFESNDTLCGIPYACNAGGVVYNKDIFEKLKLKVPTTWDEF 174 Query: 179 IAAAQKFKDSGKYAFYLTLKDSWTSLTPFNSLEPSILGTDFFKKRTEGSVTFSDSFREIA 238 I A+K K++ FY TLKD+WT++ +N++ + DFF +R + VTF D ++ IA Sbjct: 175 IDTAEKIKEAEITPFYFTLKDAWTAMPAWNAITANTQSEDFFIERRKNEVTFRDEYKPIA 234 Query: 239 EKQLKLTEFAQKDIFGKGYNDGNTAFAKGESAMYLQGVWAIPEIMKANPSLELGVFPFPA 298 EK L ++ D FG GYNDGN +FA+G +AM +QG W IPEI+K NP++ LG+F P Sbjct: 235 EKMETLMDYGHNDNFGIGYNDGNVSFAQGNAAMMIQGNWVIPEILKINPNINLGMFVLPT 294 Query: 299 TNDPAKNKVISGVDTLLTISKDSKHKEEAKKFVEFLLQPENVTAYITEQKAFPAVKGVTQ 358 ND +KN ++SG+D L + K+SK+KE A KF++F+ + ENV Y EQ A PA+K + Q Sbjct: 295 NNDASKNSIVSGIDLLFAVPKESKNKEAAIKFLDFMTKSENVEQYAKEQFAIPAIKDMYQ 354 Query: 359 NDPSTDGFKEAFTSGNLADFADHYIPGAMKVDTIIQSFLNKKDIDAYLKQLDTEWDK 415 D + + F +G + DF DH+ P +M+V + Q++L KDID L LD W++ Sbjct: 355 KDKTVEDLNPYFKNGMVLDFPDHHYPASMQVGDLAQAYLFDKDIDKLLNSLDDRWNR 411 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.130 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,493,293,167 Number of extensions: 105827928 Number of successful extensions: 280588 Number of sequences better than 1.0e-05: 1601 Number of HSP's gapped: 279576 Number of HSP's successfully gapped: 1603 Length of query: 420 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 282 Effective length of database: 1,760,596,133 Effective search space: 496488109506 Effective search space used: 496488109506 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)