BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0010.p (291 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K502.1 B3K502_9BACI Binding-protein-dependent transport system... 427 e-118 A6CSL3.1 A6CSL3_9BACI Sugar ABC transporter permease 363 1e-98 B2UXQ6.1 B2UXQ6_CLOBA ABC-type sugar transport system, permease ... 357 6e-97 A6LRD7.1 A6LRD7_CLOB8 Binding-protein-dependent transport system... 353 1e-95 B2THZ6.1 B2THZ6_CLOBB ABC-type sugar transport system, permease ... 338 3e-91 >B3K502.1 B3K502_9BACI Binding-protein-dependent transport systems inner membrane component Length = 288 Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust. Identities = 207/291 (71%), Positives = 249/291 (85%), Gaps = 3/291 (1%) Query: 1 MAKRRAAFYLMTIPALLLFFAFHTFPALQGIYYAFTNWDGYSNSFDYVGFKNFINIFKDE 60 M KR +YLMT+PA++LFF F T PALQG+YY+FTNW+G+ +FD++GFKN++N+FKD Sbjct: 1 MNKRLMPYYLMTVPAVVLFFVFLTLPALQGVYYSFTNWNGFGENFDFIGFKNYVNLFKDG 60 Query: 61 NVLNSYLFTFKYAIATTVLINIISLLIALGLNAKIKAKNFFRGVYFLPNILSVLIVGFIF 120 NV N+Y FTFK+A+ T+LINI SLLIA+GLNA+IKA+NFFRG+YFLPNILSVLIVG+IF Sbjct: 61 NVGNAYWFTFKFAVVVTILINIFSLLIAMGLNARIKARNFFRGIYFLPNILSVLIVGYIF 120 Query: 121 NYLFSNVFPVWGEKLGSDFLSQNILGNSDWAWIGIVIVAVWQGIAYNTILYLAGLQTIPH 180 NYLFSNVF +WG+ LG +LS NILG+ AWIGIV+VAVWQGIAYNTILYLAGLQTIP Sbjct: 121 NYLFSNVFTIWGQNLGIGWLSTNILGSEQHAWIGIVVVAVWQGIAYNTILYLAGLQTIPS 180 Query: 181 DLYEASNXXXXAAPSRWREFWSITFPLLASFFTINMVLAMKGGLMVFDQIIALTGGGPGR 240 LYEASN +RW+EFW ITFPL+A FFTINMVLAMK LMVFDQI+ALT GGPGR Sbjct: 181 TLYEASN---LDGANRWQEFWKITFPLIAPFFTINMVLAMKNSLMVFDQIVALTNGGPGR 237 Query: 241 STQSIALLIYTGGFQGGEFAYQSANAVIYFIVIVVISALQLKFLQKREMDL 291 +TQSI+ LIYTGGF+GGEFAYQSAN+VIYFI+I IS +Q++FLQ+RE D+ Sbjct: 238 ATQSISHLIYTGGFEGGEFAYQSANSVIYFILIATISIVQIRFLQRREGDM 288 >A6CSL3.1 A6CSL3_9BACI Sugar ABC transporter permease Length = 294 Score = 363 bits (932), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 189/291 (64%), Positives = 244/291 (83%), Gaps = 4/291 (1%) Query: 1 MAKRRAAFYLMTIPALLLFFAFHTFPALQGIYYAFTNWDGYSNSFDYVGFKNFINIFKDE 60 M K++ AF+LMTIPAL LFF FHT+PALQGI+Y+FT+W GY + +++VG KN++N+FKD+ Sbjct: 8 MHKQKTAFFLMTIPALALFFIFHTYPALQGIFYSFTDWKGYGD-YNFVGLKNYLNVFKDD 66 Query: 61 NVLNSYLFTFKYAIATTVLINIISLLIALGLNAKIKAKNFFRGVYFLPNILSVLIVGFIF 120 ++Y FTFK+AI +T+L+N+ISL IA+GLNAKIK + R VYFLPNILS+LIVG+IF Sbjct: 67 RAFHAYGFTFKFAIVSTILVNVISLTIAMGLNAKIKFQKTLRAVYFLPNILSILIVGYIF 126 Query: 121 NYLFSNVFPVWGEKLGSDFLSQNILGNSDWAWIGIVIVAVWQGIAYNTILYLAGLQTIPH 180 N++FS+ P EK G + L+ NILG+ D AW+GIVIVAVWQ +A+NTILYLAGL TI + Sbjct: 127 NFIFSHFLPEIAEKAGIESLTTNILGDPDLAWLGIVIVAVWQAVAFNTILYLAGLVTISN 186 Query: 181 DLYEASNXXXXAAPSRWREFWSITFPLLASFFTINMVLAMKGGLMVFDQIIALTGGGPGR 240 DLYEA++ + W++FW+ITFP++A FFTINMVLAMK LMVFDQI+A+TGGGPG+ Sbjct: 187 DLYEAASID---GANTWKKFWNITFPMIAPFFTINMVLAMKNFLMVFDQIVAMTGGGPGQ 243 Query: 241 STQSIALLIYTGGFQGGEFAYQSANAVIYFIVIVVISALQLKFLQKREMDL 291 ST+SI+LLIY GGFQGGEFAYQSANAVIYFIVIVVIS +Q++ LQKRE+++ Sbjct: 244 STESISLLIYRGGFQGGEFAYQSANAVIYFIVIVVISVIQIRILQKREVEM 294 >B2UXQ6.1 B2UXQ6_CLOBA ABC-type sugar transport system, permease component Length = 287 Score = 357 bits (917), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 173/291 (59%), Positives = 230/291 (79%), Gaps = 4/291 (1%) Query: 1 MAKRRAAFYLMTIPALLLFFAFHTFPALQGIYYAFTNWDGYSNSFDYVGFKNFINIFKDE 60 M ++R F LM+IPA++LFF FHT P L+GI Y+FTNW G+ + F +VG KN+I+IF DE Sbjct: 1 MKEKRRVFLLMSIPAVILFFIFHTLPLLKGISYSFTNWRGFGD-FKFVGIKNYISIFSDE 59 Query: 61 NVLNSYLFTFKYAIATTVLINIISLLIALGLNAKIKAKNFFRGVYFLPNILSVLIVGFIF 120 ++NSY+FTFK+A+ T+++N+ISL++A+GLN+KIK K+ RG+YF+PNIL LIVG+IF Sbjct: 60 RIINSYMFTFKFALLATIIVNVISLILAVGLNSKIKFKSTLRGIYFIPNILGGLIVGYIF 119 Query: 121 NYLFSNVFPVWGEKLGSDFLSQNILGNSDWAWIGIVIVAVWQGIAYNTILYLAGLQTIPH 180 NY+F+ + G+ +GS+ LS++ILGN + AW+G+VIVA WQ IA+NTI+Y++GLQTI Sbjct: 120 NYIFTFILTSAGQAMGSEILSKSILGNPNLAWLGVVIVASWQAIAFNTIIYISGLQTISE 179 Query: 181 DLYEASNXXXXAAPSRWREFWSITFPLLASFFTINMVLAMKGGLMVFDQIIALTGGGPGR 240 D+YEAS ++W +F ITFPLLA FFTINMVLAMK L VFDQII+LTGGGP Sbjct: 180 DVYEAS---AIDGANKWIQFKKITFPLLAPFFTINMVLAMKNFLNVFDQIISLTGGGPSG 236 Query: 241 STQSIALLIYTGGFQGGEFAYQSANAVIYFIVIVVISALQLKFLQKREMDL 291 ST+SIA+LIY GF G +F YQSAN+VIYFIV+V IS LQL+ L++REM L Sbjct: 237 STESIAVLIYKAGFDGSQFGYQSANSVIYFIVVVAISLLQLRILERREMQL 287 >A6LRD7.1 A6LRD7_CLOB8 Binding-protein-dependent transport systems inner membrane component Length = 287 Score = 353 bits (905), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 172/286 (60%), Positives = 223/286 (77%), Gaps = 4/286 (1%) Query: 3 KRRAAFYLMTIPALLLFFAFHTFPALQGIYYAFTNWDGYSNSFDYVGFKNFINIFKDENV 62 K++ AFY+MTIPA+LLFF FHT L+G++Y+FTN GY + + +VG KN+I +F+D NV Sbjct: 2 KKKKAFYIMTIPAVLLFFIFHTLSLLEGVFYSFTNSKGYGD-WSFVGLKNYIAVFQDSNV 60 Query: 63 LNSYLFTFKYAIATTVLINIISLLIALGLNAKIKAKNFFRGVYFLPNILSVLIVGFIFNY 122 +++Y+FTFK+AI TT+++NI+SLLIA+GLN+KIK +N + +YF+PNIL LIV FIFN+ Sbjct: 61 MHAYIFTFKFAIITTIIVNILSLLIAVGLNSKIKFQNTLKSIYFIPNILGTLIVAFIFNF 120 Query: 123 LFSNVFPVWGEKLGSDFLSQNILGNSDWAWIGIVIVAVWQGIAYNTILYLAGLQTIPHDL 182 +F++V P GE + LS+NILG+ AW+GIV VA WQ IA+NTI+YL+GLQTI D+ Sbjct: 121 VFAHVIPNIGETMNISMLSKNILGDEKLAWLGIVFVAAWQSIAFNTIIYLSGLQTIDTDV 180 Query: 183 YEASNXXXXAAPSRWREFWSITFPLLASFFTINMVLAMKGGLMVFDQIIALTGGGPGRST 242 YEA + W+ F SITFPL+A FFTINMVL MKG LMVFDQ++A+TGGGPG T Sbjct: 181 YEACD---IDGAGSWQRFKSITFPLIAPFFTINMVLCMKGFLMVFDQVVAMTGGGPGTVT 237 Query: 243 QSIALLIYTGGFQGGEFAYQSANAVIYFIVIVVISALQLKFLQKRE 288 QSI+ +IY GGF G FAYQSANAVIYFIVIV IS QL+ L+KRE Sbjct: 238 QSISYVIYNGGFNQGSFAYQSANAVIYFIVIVAISLFQLRVLEKRE 283 >B2THZ6.1 B2THZ6_CLOBB ABC-type sugar transport system, permease component Length = 287 Score = 338 bits (868), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 174/291 (59%), Positives = 232/291 (79%), Gaps = 4/291 (1%) Query: 1 MAKRRAAFYLMTIPALLLFFAFHTFPALQGIYYAFTNWDGYSNSFDYVGFKNFINIFKDE 60 M ++R F LM+IPA++LFF FHT P L+GI Y+FTNW G+ +F +VG KN+I+IF DE Sbjct: 1 MKEKRRVFLLMSIPAVILFFIFHTLPLLKGISYSFTNWRGF-GTFKFVGIKNYISIFSDE 59 Query: 61 NVLNSYLFTFKYAIATTVLINIISLLIALGLNAKIKAKNFFRGVYFLPNILSVLIVGFIF 120 ++NSY+FTFK+A+ +T+++N+ISL++A+GLN+KIK K+ RG+YF+PNIL LIVG+IF Sbjct: 60 RIINSYMFTFKFALLSTIIVNVISLILAVGLNSKIKFKSTLRGIYFIPNILGGLIVGYIF 119 Query: 121 NYLFSNVFPVWGEKLGSDFLSQNILGNSDWAWIGIVIVAVWQGIAYNTILYLAGLQTIPH 180 NY+F+ + G+ +GS+ LS++ILGN + AW+G+VIVA WQ IA+NTI+Y++GLQTI Sbjct: 120 NYIFTFILTGAGQAIGSEILSKSILGNPNLAWLGVVIVASWQAIAFNTIIYISGLQTISE 179 Query: 181 DLYEASNXXXXAAPSRWREFWSITFPLLASFFTINMVLAMKGGLMVFDQIIALTGGGPGR 240 D+YEAS ++W +F ITFPLLA FFTINMVLAMK L VFDQII+LTGGGP Sbjct: 180 DVYEAS---AIDGANKWIQFKKITFPLLAPFFTINMVLAMKNFLNVFDQIISLTGGGPSG 236 Query: 241 STQSIALLIYTGGFQGGEFAYQSANAVIYFIVIVVISALQLKFLQKREMDL 291 ST+SIA+LIY GF G +F YQSAN+VIYFIV+VVIS LQL+ L++REM L Sbjct: 237 STESIAVLIYKAGFDGSQFGYQSANSVIYFIVVVVISLLQLRILERREMQL 287 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.144 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,695,143,610 Number of extensions: 71782047 Number of successful extensions: 268400 Number of sequences better than 1.0e-05: 5790 Number of HSP's gapped: 255984 Number of HSP's successfully gapped: 5827 Length of query: 291 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 157 Effective length of database: 1,798,280,193 Effective search space: 282329990301 Effective search space used: 282329990301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)