BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0009.p (273 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K503.1 B3K503_9BACI Binding-protein-dependent transport system... 413 e-114 A6CSL4.1 A6CSL4_9BACI Sugar ABC transporter permease 381 e-104 A6LRD8.1 A6LRD8_CLOB8 Binding-protein-dependent transport system... 347 5e-94 B2UXQ7.1 B2UXQ7_CLOBA Sugar ABC transporter permease 347 8e-94 B2THZ7.1 B2THZ7_CLOBB Sugar ABC transporter permease 328 4e-88 >B3K503.1 B3K503_9BACI Binding-protein-dependent transport systems inner membrane component Length = 272 Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust. Identities = 196/272 (72%), Positives = 233/272 (85%) Query: 2 IKKTTNWPVTVIIALCSLLILFPLYMTIAIALKNPEEMARSIFSLPTGLHFENFANAIKA 61 ++ TNW V ++I L ++LILFPLYMTI IALK PE+M S+F LP LHFENFANAIK Sbjct: 1 MRTKTNWTVMILITLGTILILFPLYMTITIALKTPEDMLASVFGLPKDLHFENFANAIKM 60 Query: 62 TNFFNALGNSATITVTAVIFILLTNSMVAYAIARNMNKRFFKTLYFYFISAMFIPFQIIM 121 TNFF+ALGNSA +T V+ LLTNS+VAYAIARNMN++FFK LYFYFISAMFIPF IIM Sbjct: 61 TNFFHALGNSAMVTTATVVLTLLTNSLVAYAIARNMNRKFFKGLYFYFISAMFIPFPIIM 120 Query: 122 LPVVKVTTDLHMNNIPGLIILYIVYGLAFNVFVYVGYIRSIPYELEEAATVDGASTWGTF 181 LP+VK+T HM N+ GL IL+ VY LAFNVFVYVGYI+SIP LEEAA VDG STWGTF Sbjct: 121 LPLVKLTAGFHMTNLVGLTILHTVYALAFNVFVYVGYIKSIPVALEEAARVDGTSTWGTF 180 Query: 182 WRIIFPLLAPVNATIGILSCLSTWNDFMLPLILLGNQDSYTLPLVQYVFQGQFSTDFNLA 241 WRIIFP++AP+NAT+GIL CLST+NDF+LPLI++ + +SYTLPLVQY+FQGQF+TDFNLA Sbjct: 181 WRIIFPIMAPINATVGILICLSTYNDFLLPLIIISDTNSYTLPLVQYIFQGQFNTDFNLA 240 Query: 242 FASYLLALSPMLIIYLFAQKWIIGGLTQGSIK 273 FASYL+A+ PM+IIYLFAQKWII G+TQG++K Sbjct: 241 FASYLMAMLPMIIIYLFAQKWIINGITQGAVK 272 >A6CSL4.1 A6CSL4_9BACI Sugar ABC transporter permease Length = 273 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 179/273 (65%), Positives = 229/273 (83%) Query: 1 MIKKTTNWPVTVIIALCSLLILFPLYMTIAIALKNPEEMARSIFSLPTGLHFENFANAIK 60 M K NW +T ++ + SLLILFPLY+TI I+LK P+E+A S+++LP FEN+ AI+ Sbjct: 1 MKAKKPNWLITSLLIVGSLLILFPLYLTITISLKTPQELADSLWALPKEWRFENYLEAIE 60 Query: 61 ATNFFNALGNSATITVTAVIFILLTNSMVAYAIARNMNKRFFKTLYFYFISAMFIPFQII 120 TNFFNA NS IT+ VIF +LTNSMVAYAIARN++K+F+K L++YF+SAMF+PF II Sbjct: 61 ITNFFNAFQNSFLITIVVVIFTILTNSMVAYAIARNLHKKFYKFLFYYFVSAMFVPFPII 120 Query: 121 MLPVVKVTTDLHMNNIPGLIILYIVYGLAFNVFVYVGYIRSIPYELEEAATVDGASTWGT 180 MLP+VK T+ ++NI GL++LYIVYGLAFN+FVYVGYI+SIP ELEEAA VDGASTW Sbjct: 121 MLPIVKQTSSWGLDNIVGLMLLYIVYGLAFNIFVYVGYIKSIPKELEEAAIVDGASTWKV 180 Query: 181 FWRIIFPLLAPVNATIGILSCLSTWNDFMLPLILLGNQDSYTLPLVQYVFQGQFSTDFNL 240 FW++IFPLL P+NAT+GIL+CL WNDFMLPL++L + D TLPLVQY+FQGQFSTD+NL Sbjct: 181 FWKVIFPLLTPMNATVGILTCLWAWNDFMLPLVILSDSDMATLPLVQYMFQGQFSTDYNL 240 Query: 241 AFASYLLALSPMLIIYLFAQKWIIGGLTQGSIK 273 AFASYL+AL+PM+++Y+FAQKWII G+T+G+IK Sbjct: 241 AFASYLMALAPMILVYIFAQKWIISGVTKGAIK 273 >A6LRD8.1 A6LRD8_CLOB8 Binding-protein-dependent transport systems inner membrane component Length = 274 Score = 347 bits (891), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 168/274 (61%), Positives = 216/274 (78%), Gaps = 1/274 (0%) Query: 1 MIKKTTNWPVTVIIALCSLL-ILFPLYMTIAIALKNPEEMARSIFSLPTGLHFENFANAI 59 M + TNW VT ++ +L+ I+FPLY+TI IA+K+P++M S S P L FENF AI Sbjct: 1 MRRNKTNWIVTTLMIAGALVAIIFPLYLTILIAVKSPQDMVPSALSFPKALRFENFTEAI 60 Query: 60 KATNFFNALGNSATITVTAVIFILLTNSMVAYAIARNMNKRFFKTLYFYFISAMFIPFQI 119 + TNFF+AL NS TIT++ +I +L+NS+V+YAIARN K+FF LY+YF+SAMF+PF I Sbjct: 61 EMTNFFDALKNSLTITISVLILTILSNSLVSYAIARNRKKKFFNALYYYFLSAMFVPFPI 120 Query: 120 IMLPVVKVTTDLHMNNIPGLIILYIVYGLAFNVFVYVGYIRSIPYELEEAATVDGASTWG 179 IMLP+VK L+M+NI G+I LY+V+GL FN+F+Y GYI+SIP LEEAAT+DGAST+ Sbjct: 121 IMLPLVKQVNILNMDNIIGIICLYVVFGLPFNIFLYSGYIKSIPVSLEEAATIDGASTFQ 180 Query: 180 TFWRIIFPLLAPVNATIGILSCLSTWNDFMLPLILLGNQDSYTLPLVQYVFQGQFSTDFN 239 FWRIIFPLL P+NAT+ I +CL TWNDFMLPLI+LG + TLPLVQYVFQ QF+T++N Sbjct: 181 VFWRIIFPLLKPINATVAITTCLWTWNDFMLPLIILGKPEMATLPLVQYVFQSQFTTNYN 240 Query: 240 LAFASYLLALSPMLIIYLFAQKWIIGGLTQGSIK 273 LAFASYLLAL PM I+Y+FAQKWI G+ G++K Sbjct: 241 LAFASYLLALLPMFIVYIFAQKWIRNGIVTGAVK 274 >B2UXQ7.1 B2UXQ7_CLOBA Sugar ABC transporter permease Length = 289 Score = 347 bits (889), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 164/271 (60%), Positives = 220/271 (81%) Query: 3 KKTTNWPVTVIIALCSLLILFPLYMTIAIALKNPEEMARSIFSLPTGLHFENFANAIKAT 62 ++ TNW VT+++ L ++ I+FPL +T+ IALK+P++M IFSLP HFENF AI+ T Sbjct: 19 EEKTNWLVTILMILGTITIIFPLLITVLIALKSPQDMMNGIFSLPKVFHFENFTKAIEMT 78 Query: 63 NFFNALGNSATITVTAVIFILLTNSMVAYAIARNMNKRFFKTLYFYFISAMFIPFQIIML 122 NFFNAL NS TIT++AV+ L+TNSMV YAIARNM+K+ +K +Y+YF+SAMF+PF IIML Sbjct: 79 NFFNALKNSLTITISAVVLTLITNSMVGYAIARNMHKKTYKAMYYYFLSAMFVPFPIIML 138 Query: 123 PVVKVTTDLHMNNIPGLIILYIVYGLAFNVFVYVGYIRSIPYELEEAATVDGASTWGTFW 182 P+VK + +M+N+ GLI+LY VYGL+ NVF+YVG+++SIP ELEEAA +DGASTW F+ Sbjct: 139 PLVKQVSVWNMDNVMGLILLYTVYGLSSNVFLYVGFLKSIPVELEEAALIDGASTWQVFY 198 Query: 183 RIIFPLLAPVNATIGILSCLSTWNDFMLPLILLGNQDSYTLPLVQYVFQGQFSTDFNLAF 242 +IIFP+L P+++T+ IL+ L WND MLPL++L N D T+PLVQ++FQ QF TD+NLAF Sbjct: 199 KIIFPMLKPIHSTVAILTALWCWNDVMLPLVILSNPDFATIPLVQFIFQSQFGTDYNLAF 258 Query: 243 ASYLLALSPMLIIYLFAQKWIIGGLTQGSIK 273 ASYLLAL P+L+ YLFAQK II G+T+G+IK Sbjct: 259 ASYLLALIPILVFYLFAQKGIIDGVTKGAIK 289 >B2THZ7.1 B2THZ7_CLOBB Sugar ABC transporter permease Length = 289 Score = 328 bits (840), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 166/271 (61%), Positives = 216/271 (79%) Query: 3 KKTTNWPVTVIIALCSLLILFPLYMTIAIALKNPEEMARSIFSLPTGLHFENFANAIKAT 62 + TNW VT+++ L ++ +LFPL +T+ IALK+P++M IFSLP HFENF AI+ T Sbjct: 19 DEKTNWFVTILMILGTITVLFPLLITVLIALKSPQDMMNGIFSLPKVFHFENFTKAIEMT 78 Query: 63 NFFNALGNSATITVTAVIFILLTNSMVAYAIARNMNKRFFKTLYFYFISAMFIPFQIIML 122 NFFNAL NS TIT+T VI L+TNSMV YAIARNMNK+ +K +Y+YF+SAMF+PF IIML Sbjct: 79 NFFNALKNSLTITITTVILTLITNSMVGYAIARNMNKKTYKAMYYYFLSAMFVPFPIIML 138 Query: 123 PVVKVTTDLHMNNIPGLIILYIVYGLAFNVFVYVGYIRSIPYELEEAATVDGASTWGTFW 182 P+VK + M+N+ GLI+LY VYGL+ NVF+YVG+++SIP ELEEAA +DGASTW F+ Sbjct: 139 PLVKQVSVWSMDNVMGLILLYTVYGLSSNVFLYVGFLKSIPVELEEAALIDGASTWQVFY 198 Query: 183 RIIFPLLAPVNATIGILSCLSTWNDFMLPLILLGNQDSYTLPLVQYVFQGQFSTDFNLAF 242 +IIFP+L P++AT+ IL+ L WND MLPL++L N D T+PLVQ++FQ QF TD+NLAF Sbjct: 199 KIIFPMLKPIHATVAILTALWCWNDVMLPLVILSNPDFATIPLVQFIFQSQFGTDYNLAF 258 Query: 243 ASYLLALSPMLIIYLFAQKWIIGGLTQGSIK 273 ASYLLAL P+L+ YL AQK II G+T+G+IK Sbjct: 259 ASYLLALIPILLFYLIAQKGIIDGVTKGAIK 289 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.142 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,535,666,712 Number of extensions: 62236978 Number of successful extensions: 238808 Number of sequences better than 1.0e-05: 7047 Number of HSP's gapped: 231321 Number of HSP's successfully gapped: 7048 Length of query: 273 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 139 Effective length of database: 1,798,280,193 Effective search space: 249960946827 Effective search space used: 249960946827 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)