BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0004.p (276 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B6XIU3.1 B6XIU3_9ENTR Putative uncharacterized protein 315 2e-84 B2Q0N2.1 B2Q0N2_PROST Putative uncharacterized protein 312 2e-83 B6X4X4.1 B6X4X4_9ENTR Putative uncharacterized protein 303 1e-80 C3AMT2.1 C3AMT2_BACMY NLPA lipoprotein 246 2e-63 C3BM17.1 C3BM17_9BACI NLPA lipoprotein 245 2e-63 >B6XIU3.1 B6XIU3_9ENTR Putative uncharacterized protein Length = 285 Score = 315 bits (808), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 154/272 (56%), Positives = 199/272 (73%), Gaps = 5/272 (1%) Query: 5 TLAAAALVGMSVVLGACG-NKEAAGADKKDIVVGFGVGTYEEQFRLGIVPILEKEGYKVM 63 +L A A++ VL CG NKE ADKK I +GFGVG Y +Q GIVPILEK+GY+V Sbjct: 15 SLVATAII----VLAGCGDNKEKDSADKKQITIGFGVGNYIDQVDKGIVPILEKKGYQVT 70 Query: 64 IKTFSQNMQVNPAMKEGSIDASIFQSTAYMEGINKEIGADMAVLNFVPSAPQGLYSEKHK 123 ++ FSQN Q+NPA +EG+IDAS+ QS AYME N++ +M L PSAPQ L S KHK Sbjct: 71 LRQFSQNRQINPAFEEGAIDASVNQSRAYMEAYNQKNNINMVALADSPSAPQSLRSNKHK 130 Query: 124 SLDEVKDGSVIAIPNDPVNQERAVRILEELGWVKVKPGAGTTDFNLSSVEPDKYQLKLEA 183 SLDEV+DG ++A+ NDPVN ER RILE+LGW+K+KP T +F+++ +EP KY+L + Sbjct: 131 SLDEVQDGMIVALSNDPVNAERGARILEQLGWIKIKPNVSTLNFSVNDIEPAKYKLDIRE 190 Query: 184 LDSAQILVSLADVDYGVVNGNYIANAKRQITEALKIENTPEQHRVTVTVNKDDLDTQWAK 243 D+AQ L L DVD+ VVNGNY+A+A ++I + L +EN+P +HRV VTV + DLDTQWAK Sbjct: 191 TDAAQGLRLLDDVDFVVVNGNYVASAGQRIADGLVVENSPLEHRVIVTVLQKDLDTQWAK 250 Query: 244 DLKAAYESKEFEEYIHAQDKYDGFILPDAWAN 275 DLK A+ESKE+ +YI +Q YDGFI P AWAN Sbjct: 251 DLKEAFESKEYADYIRSQRLYDGFIEPAAWAN 282 >B2Q0N2.1 B2Q0N2_PROST Putative uncharacterized protein Length = 295 Score = 312 bits (800), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 153/276 (55%), Positives = 199/276 (72%), Gaps = 5/276 (1%) Query: 1 MKIRTLAAAALVGMSVVLGACG-NKEAAGADKKDIVVGFGVGTYEEQFRLGIVPILEKEG 59 +K +L A A++ L AC N E +KK+I +GFGVG Y +Q GIVPILEK+G Sbjct: 20 IKYLSLIATAVIA----LAACNDNSEKDNPNKKEITIGFGVGNYIDQVEKGIVPILEKKG 75 Query: 60 YKVMIKTFSQNMQVNPAMKEGSIDASIFQSTAYMEGINKEIGADMAVLNFVPSAPQGLYS 119 YKV ++ FSQN Q+NPA +EGSIDAS+ QS AYME NK+ +M L PSAPQ L S Sbjct: 76 YKVNLRQFSQNRQINPAFEEGSIDASVNQSRAYMEAYNKKNNINMVALTDSPSAPQSLRS 135 Query: 120 EKHKSLDEVKDGSVIAIPNDPVNQERAVRILEELGWVKVKPGAGTTDFNLSSVEPDKYQL 179 KHKSLDEVKDG ++A+ NDPVN ER RILEELGW+K+KP T F+++ +EP KY+L Sbjct: 136 NKHKSLDEVKDGMIVALSNDPVNAERGARILEELGWIKIKPNISTLTFSVNDIEPAKYRL 195 Query: 180 KLEALDSAQILVSLADVDYGVVNGNYIANAKRQITEALKIENTPEQHRVTVTVNKDDLDT 239 + D+AQ L L DVD+ VVNGNY+A+A ++I + L +EN+P +HRV VTV +D++++ Sbjct: 196 DIRETDAAQGLRLLDDVDFVVVNGNYVASAGQRIADGLVVENSPLEHRVIVTVMQDNVNS 255 Query: 240 QWAKDLKAAYESKEFEEYIHAQDKYDGFILPDAWAN 275 QWAKDLK A+ESKE+ +YI +Q YDGFI P AWAN Sbjct: 256 QWAKDLKEAFESKEYADYIRSQSIYDGFIEPQAWAN 291 >B6X4X4.1 B6X4X4_9ENTR Putative uncharacterized protein Length = 296 Score = 303 bits (775), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 148/275 (53%), Positives = 195/275 (70%), Gaps = 2/275 (0%) Query: 1 MKIRTLAAAALVGMSVV-LGACG-NKEAAGADKKDIVVGFGVGTYEEQFRLGIVPILEKE 58 M + L +L+ +V+ L CG N E DKK I +GFGVG Y +Q GIVPILEK+ Sbjct: 20 MLKQKLINISLIATAVIFLAGCGDNNEQTNPDKKQITIGFGVGNYIDQVEKGIVPILEKK 79 Query: 59 GYKVMIKTFSQNMQVNPAMKEGSIDASIFQSTAYMEGINKEIGADMAVLNFVPSAPQGLY 118 GY+V ++ FSQN Q+NPA +EG+IDAS+ QS AYME N++ +M L PSAPQ L Sbjct: 80 GYQVNLRQFSQNRQINPAFEEGAIDASVNQSRAYMEAYNEKNNINMVALADSPSAPQSLR 139 Query: 119 SEKHKSLDEVKDGSVIAIPNDPVNQERAVRILEELGWVKVKPGAGTTDFNLSSVEPDKYQ 178 S KHKSL EVKDG ++A+ NDPVN ER RILE+LGW+K+KP T F+++ +EP KY+ Sbjct: 140 SNKHKSLSEVKDGMIVALSNDPVNAERGARILEDLGWIKIKPNVSTLSFSVNDIEPAKYK 199 Query: 179 LKLEALDSAQILVSLADVDYGVVNGNYIANAKRQITEALKIENTPEQHRVTVTVNKDDLD 238 L + D+AQ L L DVD+ VVNGNY+A+A ++I + L +EN+P +HRV V+V + DLD Sbjct: 200 LDIRETDAAQGLRLLEDVDFVVVNGNYVASAGQRIADGLVVENSPLEHRVVVSVLQKDLD 259 Query: 239 TQWAKDLKAAYESKEFEEYIHAQDKYDGFILPDAW 273 +QWAKDLK A+ESKE+ +YI +Q YDGFI P AW Sbjct: 260 SQWAKDLKEAFESKEYADYIRSQRIYDGFIEPAAW 294 >C3AMT2.1 C3AMT2_BACMY NLPA lipoprotein Length = 272 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 120/271 (44%), Positives = 178/271 (65%), Gaps = 2/271 (0%) Query: 1 MKIRTLAAAALVGMSVVLGACGNKEAAGADKKDIVVGFGVGTYEEQFRLGIVPILEKEGY 60 MK A ++V ++ C + +G D+K+I +GF G Y +Q + + P LEK+GY Sbjct: 1 MKRLFFALVSIVCSLFIITGCT--QTSGGDQKEIRLGFTPGPYSDQVKKAVQPYLEKKGY 58 Query: 61 KVMIKTFSQNMQVNPAMKEGSIDASIFQSTAYMEGINKEIGADMAVLNFVPSAPQGLYSE 120 K+ I F+ + NPA+ IDA+IFQSTA+M+ KE A ++ + VPSAPQG+YSE Sbjct: 59 KIKIVEFNSPNETNPALTNKDIDANIFQSTAFMKSYAKENNAKISSIIQVPSAPQGVYSE 118 Query: 121 KHKSLDEVKDGSVIAIPNDPVNQERAVRILEELGWVKVKPGAGTTDFNLSSVEPDKYQLK 180 KHKSLD++KDG I +PNDPVN ERA+RILE +GWVK+K + + K K Sbjct: 119 KHKSLDDLKDGMKIGVPNDPVNLERALRILEGIGWVKLKENVNILTISEKDITFKKKDFK 178 Query: 181 LEALDSAQILVSLADVDYGVVNGNYIANAKRQITEALKIENTPEQHRVTVTVNKDDLDTQ 240 L L+S QI ++ D+DYG++NGN + ++ ++ EAL++E TP QHR+ VTV +D + Q Sbjct: 179 LVPLESPQIPRAMKDLDYGIINGNLVISSGHKLKEALELEKTPSQHRIIVTVRDEDKEKQ 238 Query: 241 WAKDLKAAYESKEFEEYIHAQDKYDGFILPD 271 +AKDL AY S EF++ I ++++++GF+LPD Sbjct: 239 FAKDLMEAYHSPEFKKMIQSEEQFEGFVLPD 269 >C3BM17.1 C3BM17_9BACI NLPA lipoprotein Length = 272 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 120/271 (44%), Positives = 179/271 (66%), Gaps = 2/271 (0%) Query: 1 MKIRTLAAAALVGMSVVLGACGNKEAAGADKKDIVVGFGVGTYEEQFRLGIVPILEKEGY 60 MK A ++V ++ C + +G D+K+I +GF G Y +Q + + P LEK+GY Sbjct: 1 MKRLFFALVSIVCSLFIITGCT--QTSGGDQKEIRLGFTPGPYSDQVKKAVQPYLEKKGY 58 Query: 61 KVMIKTFSQNMQVNPAMKEGSIDASIFQSTAYMEGINKEIGADMAVLNFVPSAPQGLYSE 120 K+ I F+ + NPA+ IDA+IFQSTA+M+ KE A+++ + VPSAPQG+YSE Sbjct: 59 KIKIVEFNSPNETNPALTNKDIDANIFQSTAFMKSYAKENNAEISSIIQVPSAPQGVYSE 118 Query: 121 KHKSLDEVKDGSVIAIPNDPVNQERAVRILEELGWVKVKPGAGTTDFNLSSVEPDKYQLK 180 KHKSLD++KDG I +PNDPVN ERA+RILE +GWVK+K + + K K Sbjct: 119 KHKSLDDLKDGMKIGVPNDPVNLERALRILEGIGWVKLKGNVNILTISEKDITFKKKDFK 178 Query: 181 LEALDSAQILVSLADVDYGVVNGNYIANAKRQITEALKIENTPEQHRVTVTVNKDDLDTQ 240 L L+S QI ++ D+DYG++NGN + ++ ++ EAL++E TP QHR+ VTV +D + Q Sbjct: 179 LVPLESPQIPRAMKDLDYGIINGNLVISSGHKLKEALELEKTPSQHRIIVTVRDEDKEKQ 238 Query: 241 WAKDLKAAYESKEFEEYIHAQDKYDGFILPD 271 +AKDL AY S EF++ I ++++++GF+LPD Sbjct: 239 FAKDLIEAYHSPEFKKMIQSEEQFEGFVLPD 269 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.132 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,651,570,080 Number of extensions: 68163281 Number of successful extensions: 159114 Number of sequences better than 1.0e-05: 1939 Number of HSP's gapped: 157308 Number of HSP's successfully gapped: 1940 Length of query: 276 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 142 Effective length of database: 1,798,280,193 Effective search space: 255355787406 Effective search space used: 255355787406 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)