BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0003.p (258 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGN7.1 B3KGN7_9BACI Glycerophosphodiester phosphodiesterase EC... 352 1e-95 B1D4N6.1 B1D4N6_9BACL Glycerophosphodiester phosphodiesterase EC... 311 4e-83 Q8RB32.1 Q8RB32_THETN Glycerophosphoryl diester phosphodiesterase 266 2e-69 B7R9L2.1 B7R9L2_9THEO Glycerophosphoryl diester phosphodiesteras... 266 2e-69 B0K906.1 B0K906_THEP3 Glycerophosphodiester phosphodiesterase EC... 249 2e-64 >B3KGN7.1 B3KGN7_9BACI Glycerophosphodiester phosphodiesterase EC=3.1.4.46 Length = 245 Score = 352 bits (904), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 174/240 (72%), Positives = 201/240 (83%) Query: 18 INFAHRGASAVCPENTMAAFRKGLELGATGIETDVQMTLDGRLILIHDESLNRTTNRSGL 77 INFAHRG+SA+CPENTMAAF KGLE GATGIETDVQMT DG+L+LIHDES+ RTT GL Sbjct: 5 INFAHRGSSAICPENTMAAFAKGLEQGATGIETDVQMTKDGKLVLIHDESVARTTGAEGL 64 Query: 78 VKDMTLSEVLKADAGSWFGAEFAGERIPVLEELLDLLQGRDTILNIELKNGTYLYPGMEE 137 VKD T E+ K DAGSWFGA+F GERIP+LEELL+L Q R TI+NIELKNGT YP +E+ Sbjct: 65 VKDYTYDELAKLDAGSWFGADFQGERIPLLEELLELTQNRGTIVNIELKNGTIQYPELEK 124 Query: 138 KVIAAVREYGMSERIVLSSFNHYSLAYCKSLAPEIRTGILYGEGLYRPWDYAASLQADAL 197 +VI AVR Y M+E+IV+SSFNHYSL CK + PEIRTG+LYGEGLY+PW+YA +ADAL Sbjct: 125 RVIEAVRHYNMAEQIVISSFNHYSLVECKHIDPEIRTGLLYGEGLYQPWEYAKLAKADAL 184 Query: 198 HAYHLAVLPEFVAGAAEHGVVYHPWTVNDPERMKYLIEAGVAGIITDVPDVLAGLLASRG 257 HAYH AVLPE+V A +HGVVYHPWTVND RMK L++AGVAGIITD PDVL GLL ++G Sbjct: 185 HAYHRAVLPEWVTEAKQHGVVYHPWTVNDEGRMKELMDAGVAGIITDYPDVLNGLLQTKG 244 >B1D4N6.1 B1D4N6_9BACL Glycerophosphodiester phosphodiesterase EC=3.1.4.46 Length = 243 Score = 311 bits (797), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 149/236 (63%), Positives = 181/236 (76%) Query: 18 INFAHRGASAVCPENTMAAFRKGLELGATGIETDVQMTLDGRLILIHDESLNRTTNRSGL 77 +N+AHRGAS PENTM AF K +E GATGIETDVQMT DG+L+LIHDE L RTT + L Sbjct: 5 VNYAHRGASGNYPENTMIAFEKAIEFGATGIETDVQMTKDGKLVLIHDEMLRRTTGMNSL 64 Query: 78 VKDMTLSEVLKADAGSWFGAEFAGERIPVLEELLDLLQGRDTILNIELKNGTYLYPGMEE 137 V D+ ++L+ DAGSWF F RIP LE+LLDL + TI+NIELKNG YPG+E+ Sbjct: 65 VADIHSDDLLQLDAGSWFSPNFKDARIPALEQLLDLAKQTGTIINIELKNGIVPYPGLEQ 124 Query: 138 KVIAAVREYGMSERIVLSSFNHYSLAYCKSLAPEIRTGILYGEGLYRPWDYAASLQADAL 197 KVI VR YGM ++++LSSFNHYSL CK LAPEIRTGILY EGLYRPW YA S+ A AL Sbjct: 125 KVIETVRAYGMEDQVILSSFNHYSLIECKRLAPEIRTGILYMEGLYRPWKYALSIGASAL 184 Query: 198 HAYHLAVLPEFVAGAAEHGVVYHPWTVNDPERMKYLIEAGVAGIITDVPDVLAGLL 253 HA H AVLP++VA AA+HGV+Y+ +TVN+P M+ LI++GVAG+ITD P+ L LL Sbjct: 185 HASHFAVLPDWVAEAAQHGVIYNVFTVNEPAEMQRLIQSGVAGLITDYPERLTALL 240 >Q8RB32.1 Q8RB32_THETN Glycerophosphoryl diester phosphodiesterase Length = 243 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 123/237 (51%), Positives = 169/237 (71%) Query: 21 AHRGASAVCPENTMAAFRKGLELGATGIETDVQMTLDGRLILIHDESLNRTTNRSGLVKD 80 AHRG S PENT+AAF++ +ELGA GIE DVQ+T DG L++IHDE+++RTTN G VKD Sbjct: 7 AHRGDSKNVPENTIAAFKRAMELGADGIELDVQLTKDGHLVVIHDETVDRTTNGEGFVKD 66 Query: 81 MTLSEVLKADAGSWFGAEFAGERIPVLEELLDLLQGRDTILNIELKNGTYLYPGMEEKVI 140 TL E+ K DAG FG +FAGERIP L E+ +L+ +D ++NIE+K+G LYPG+EEK+I Sbjct: 67 FTLEEIKKLDAGIKFGEKFAGERIPTLYEVFELIGDKDFLVNIEIKSGIVLYPGIEEKLI 126 Query: 141 AAVREYGMSERIVLSSFNHYSLAYCKSLAPEIRTGILYGEGLYRPWDYAASLQADALHAY 200 A++EY ER+++SSFNHYSL K +AP ++ G+LY GL PW A ++A +LH + Sbjct: 127 KAIKEYNFEERVIISSFNHYSLRDVKKMAPHLKIGLLYQCGLVEPWHMALRMEAYSLHPF 186 Query: 201 HLAVLPEFVAGAAEHGVVYHPWTVNDPERMKYLIEAGVAGIITDVPDVLAGLLASRG 257 + ++PE V G ++GV PWTV+ E M+ +I+AGV GIITD P+ L L+ G Sbjct: 187 YFNIIPELVEGCKKNGVKLFPWTVDRKEDMERMIKAGVDGIITDDPETLINLVRKGG 243 >B7R9L2.1 B7R9L2_9THEO Glycerophosphoryl diester phosphodiesterase family protein Length = 243 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 123/237 (51%), Positives = 169/237 (71%) Query: 21 AHRGASAVCPENTMAAFRKGLELGATGIETDVQMTLDGRLILIHDESLNRTTNRSGLVKD 80 AHRG S PENT+AAF++ +ELGA GIE DVQ+T DG L++IHDE+++RTTN G VKD Sbjct: 7 AHRGDSKNVPENTIAAFKRAMELGADGIELDVQLTKDGHLVVIHDETVDRTTNGEGFVKD 66 Query: 81 MTLSEVLKADAGSWFGAEFAGERIPVLEELLDLLQGRDTILNIELKNGTYLYPGMEEKVI 140 TL E+ K DAG FG +FAGERIP L E+ +L+ +D ++NIE+K+G LYPG+EEK+I Sbjct: 67 FTLEEIKKLDAGIKFGEKFAGERIPTLYEVFELIGDKDFLVNIEIKSGIVLYPGIEEKLI 126 Query: 141 AAVREYGMSERIVLSSFNHYSLAYCKSLAPEIRTGILYGEGLYRPWDYAASLQADALHAY 200 A++EY ER+++SSFNHYSL K +AP ++ G+LY GL PW A ++A +LH + Sbjct: 127 KAIKEYNFEERVIISSFNHYSLRDVKKMAPHLKIGLLYQCGLVEPWHMALRMEAYSLHPF 186 Query: 201 HLAVLPEFVAGAAEHGVVYHPWTVNDPERMKYLIEAGVAGIITDVPDVLAGLLASRG 257 + ++PE V G ++GV PWTV+ E M+ +I+AGV GIITD P+ L L+ G Sbjct: 187 YFNIIPELVEGCKKNGVKLFPWTVDRKEDMERMIKAGVDGIITDDPETLINLVRKGG 243 >B0K906.1 B0K906_THEP3 Glycerophosphodiester phosphodiesterase EC=3.1.4.46 Length = 243 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 116/233 (49%), Positives = 163/233 (69%) Query: 21 AHRGASAVCPENTMAAFRKGLELGATGIETDVQMTLDGRLILIHDESLNRTTNRSGLVKD 80 AHRG S PENT+A+F+ LE+GA GIE DVQ+T DG+L++IHDE ++RTT+ G VKD Sbjct: 7 AHRGDSRNAPENTLASFKSALEMGADGIELDVQLTKDGQLVVIHDERVDRTTDGIGFVKD 66 Query: 81 MTLSEVLKADAGSWFGAEFAGERIPVLEELLDLLQGRDTILNIELKNGTYLYPGMEEKVI 140 TL E+ + DAG F +FAGERIP L E+ +L+ ++ I+NIE+K+G LYPG+EEK+I Sbjct: 67 FTLKELKRLDAGIKFDKKFAGERIPSLYEVFELIGHKNFIVNIEIKSGIVLYPGIEEKLI 126 Query: 141 AAVREYGMSERIVLSSFNHYSLAYCKSLAPEIRTGILYGEGLYRPWDYAASLQADALHAY 200 A+ +Y +R+V+SSFNHYSL K +APE++ G+LY GL PW A ++A +LH + Sbjct: 127 KAIEDYDFEDRVVISSFNHYSLRDVKRMAPELKIGLLYQCGLVEPWHMAIRMKAYSLHPF 186 Query: 201 HLAVLPEFVAGAAEHGVVYHPWTVNDPERMKYLIEAGVAGIITDVPDVLAGLL 253 + ++PE V G ++ + PWTV+ E M+ +I+AGV IITD P L LL Sbjct: 187 YFNIIPELVEGCKKNNIKLFPWTVDRKEDMEMMIKAGVDAIITDDPQTLINLL 239 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,409,424,422 Number of extensions: 58125328 Number of successful extensions: 159848 Number of sequences better than 1.0e-05: 2298 Number of HSP's gapped: 157294 Number of HSP's successfully gapped: 2306 Length of query: 258 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 125 Effective length of database: 1,807,701,208 Effective search space: 225962651000 Effective search space used: 225962651000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)