BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0396.0003.p (393 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIR5.1 B3KIR5_9BACI ATP-dependent helicase HrpB 400 e-109 A1HNU7.1 A1HNU7_9FIRM ATP-dependent helicase HrpB 370 e-101 C0Z909.1 C0Z909_BREBN Putative ATP-dependent helicase 368 e-100 B0TA29.1 B0TA29_HELMI ATP-dependent helicase hrpb 352 3e-95 B1DLS9.1 B1DLS9_9BACL ATP-dependent helicase HrpB 342 5e-92 >B3KIR5.1 B3KIR5_9BACI ATP-dependent helicase HrpB Length = 836 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 203/395 (51%), Positives = 270/395 (68%), Gaps = 7/395 (1%) Query: 3 KLAALLQERDLLQGPAAL-DSDLTLRVEALLRFERX---XXXXXXXXXXXLRAVQRESRS 58 ++A LLQERD+L AL D DL RVE LL FE+ L+ +++E R Sbjct: 441 RIAVLLQERDILSRSEALRDQDLRSRVERLLLFEQHGQRSAQQDTANEAVLQRMKQEIRK 500 Query: 59 FLAQLTAAPGALPDNISLTGLLLSFAYPDRIGQKRGDGAFLLSGGRGAAMREGQPLTRSP 118 AQL A D ++L GLLLSFAYPDRI + RG FL+ GRG + QP++R+ Sbjct: 501 LHAQLNIEYAADGD-LNLCGLLLSFAYPDRIAKNRGGSGFLMRSGRGVKLAAVQPMSRAR 559 Query: 119 YIVAAGIDDRAGQSRIMLAADLPEADLLKYHKDSLQEEREVYWDKESGSVQARRRTLLGA 178 YIVAA +DD+ I LA+++ E L +Y+ D +++++EV WD SGS++AR++ +LGA Sbjct: 560 YIVAAAVDDQGADGNIQLASEMDEVWLEQYYLDEMEQQKEVAWDTASGSIRARQKLMLGA 619 Query: 179 LILKETSHERPTAKETEEVLLRVIAEEGLKLLPWDKATVQLRQRMEFL--HGLRPDFPDV 236 +++KE ++ PT +E LL+ I +EGL L W KA +QLR+RM F+ H D+PDV Sbjct: 620 IVVKEQAYPNPTGEEIARALLQGIRQEGLGLFQWSKAAMQLRERMAFMFRHEAEGDWPDV 679 Query: 237 SEEALLSTLQEWLLPFIQGMRNLRDLQRVPVSRALEGLLDWNSRQLLDREAPAHITVPSG 296 S+E LL + WLLP++ G+RN D++R+ LE +L W +Q L EAP HI VPSG Sbjct: 680 SDEGLLDRAEAWLLPYLDGLRNRNDIRRLAPGTLLEHMLSWEQKQQLQNEAPTHIKVPSG 739 Query: 297 SRIPVDYSSPSAPVLAVRLQEMFGQADTPRIGGGKVAVLLHLLSPARRPVQVTADLASFW 356 S+IP++YS+P P LAVRLQEMFG DTPRI GG+VA+ LHLLSPA+RPVQVT+DL+SFW Sbjct: 740 SQIPINYSNPEQPFLAVRLQEMFGMRDTPRIAGGRVALTLHLLSPAQRPVQVTSDLSSFW 799 Query: 357 RSTYFEVKKDLKGRYPKHYWPDDPLQAAPTNRTRP 391 + Y+EVKKDLKGRYPKHYWPDDPL+A TNRTRP Sbjct: 800 ANGYYEVKKDLKGRYPKHYWPDDPLEAVATNRTRP 834 >A1HNU7.1 A1HNU7_9FIRM ATP-dependent helicase HrpB Length = 845 Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust. Identities = 202/392 (51%), Positives = 257/392 (65%), Gaps = 4/392 (1%) Query: 3 KLAALLQERDLLQGPA-ALDSDLTLRVEALLRFERXXXXXXXXXXXXLRAVQR--ESRSF 59 +LA LL ERD+L+ A D+DL LRVEAL R AV+R + Sbjct: 453 ELAVLLSERDILRSSGGASDADLRLRVEAL-RLAGQAERDNPAHMVDWAAVRRLRAELDY 511 Query: 60 LAQLTAAPGALPDNISLTGLLLSFAYPDRIGQKRGDGAFLLSGGRGAAMREGQPLTRSPY 119 L +L G + + GLLL+FAYPDRIGQ+R +G FLL+ GRGAA+ Q L +PY Sbjct: 512 LRRLFGIAGQEAGDTNACGLLLAFAYPDRIGQRRENGRFLLASGRGAAVAGMQALADAPY 571 Query: 120 IVAAGIDDRAGQSRIMLAADLPEADLLKYHKDSLQEEREVYWDKESGSVQARRRTLLGAL 179 +VAA +DD+ +SRI+LAA + A L ++ D ++E V WD+ + +V+AR+ LGAL Sbjct: 572 LVAAELDDQGTESRILLAAPVDFATLKQHFADQIEETVTVVWDRAAQAVRARKYERLGAL 631 Query: 180 ILKETSHERPTAKETEEVLLRVIAEEGLKLLPWDKATVQLRQRMEFLHGLRPDFPDVSEE 239 IL+E P ++ LL IAE GL +LPW +A QLRQR+ F+H L P +PD+S+E Sbjct: 632 ILREVPVADPAPEDVLAALLAGIAEAGLDILPWTRAASQLRQRINFMHRLEPGWPDMSDE 691 Query: 240 ALLSTLQEWLLPFIQGMRNLRDLQRVPVSRALEGLLDWNSRQLLDREAPAHITVPSGSRI 299 AL+ TL WL P++ G+ L R+ + +E L W+ R+ LD AP HI VPSG RI Sbjct: 692 ALIETLDSWLGPYLYGISGRDGLARLNLVTIIESTLTWDQRRELDECAPTHIVVPSGQRI 751 Query: 300 PVDYSSPSAPVLAVRLQEMFGQADTPRIGGGKVAVLLHLLSPARRPVQVTADLASFWRST 359 PVDYS P+APVLAVRLQEMFG +TPRI G+V + LHLLSPA RPVQVT DLASFWR Sbjct: 752 PVDYSDPAAPVLAVRLQEMFGLTETPRIARGRVPLTLHLLSPAHRPVQVTRDLASFWRGA 811 Query: 360 YFEVKKDLKGRYPKHYWPDDPLQAAPTNRTRP 391 YFEV+KDL GRYPKHYWPDDPL A PT+R RP Sbjct: 812 YFEVRKDLLGRYPKHYWPDDPLAATPTHRVRP 843 >C0Z909.1 C0Z909_BREBN Putative ATP-dependent helicase Length = 834 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 197/394 (50%), Positives = 260/394 (65%), Gaps = 7/394 (1%) Query: 3 KLAALLQERDLLQG-PAALDSDLTLRVEALLRFERXXXXXXXXXXXXLRAVQR---ESRS 58 +LA LL+ERD+++G A++D+D+ RVE LLR + A QR E+ Sbjct: 441 ELAVLLEERDIVRGRQASVDADMRTRVE-LLRRVGNKQSGGTELPIDVGACQRLWKEAAH 499 Query: 59 FLAQLTAAPGA-LPDNISLTGLLLSFAYPDRIGQKRGDGAFLLSGGRGAAMREGQPLTRS 117 F A TG LL+FAYPDRI Q+R DG +LL GRGAA QPL S Sbjct: 500 FKRVWGNNQSAGTSTRTEATGRLLAFAYPDRIAQRRADGRYLLRNGRGAAFSVQQPLVAS 559 Query: 118 PYIVAAGIDDRAGQSRIMLAADLPEADLLKYHKDSLQEEREVYWDKESGSVQARRRTLLG 177 PYIVAA +DD+ SRI+LAA + E++LLK + E V+W+ +G+V++R++ LG Sbjct: 560 PYIVAAELDDQGADSRILLAASVEESELLKDCAMQITERMNVWWEHSAGAVRSRKQKRLG 619 Query: 178 ALILKETSHERPTAKETEEVLLRVIAEEGLKLLPWDKATVQLRQRMEFLHGLRPDFPDVS 237 A++L + E + E L I EGL++LPW++ Q R+R+ F+H L D+P+V Sbjct: 620 AILLADMPAE-SSPDEVLTAFLDGIKGEGLEILPWNRQARQYRERLLFMHRLEEDWPNVE 678 Query: 238 EEALLSTLQEWLLPFIQGMRNLRDLQRVPVSRALEGLLDWNSRQLLDREAPAHITVPSGS 297 +E+LL++L+EWL P + G + DLQ + V+ LE +L W R+ LD AP H+ VPSGS Sbjct: 679 DESLLASLEEWLAPHVYGFKRKEDLQSLSVTTLLESMLSWEQRRQLDEHAPTHVIVPSGS 738 Query: 298 RIPVDYSSPSAPVLAVRLQEMFGQADTPRIGGGKVAVLLHLLSPARRPVQVTADLASFWR 357 +IPVDYS+P+APVL++RLQE+FG D+PRIG G+V + LHLLSPA RPVQVT DLASFW Sbjct: 739 KIPVDYSNPAAPVLSIRLQELFGWQDSPRIGRGRVPLTLHLLSPAHRPVQVTRDLASFWA 798 Query: 358 STYFEVKKDLKGRYPKHYWPDDPLQAAPTNRTRP 391 YFEVKKDLKGRYPKHYWPDDPL A PTNRTRP Sbjct: 799 HAYFEVKKDLKGRYPKHYWPDDPLAAIPTNRTRP 832 >B0TA29.1 B0TA29_HELMI ATP-dependent helicase hrpb Length = 874 Score = 352 bits (903), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 175/318 (55%), Positives = 228/318 (71%) Query: 74 ISLTGLLLSFAYPDRIGQKRGDGAFLLSGGRGAAMREGQPLTRSPYIVAAGIDDRAGQSR 133 + GLLL+FA+PDRIGQ+R DG FLL GRGAA + QPL SPY+VAA +DD+ +SR Sbjct: 555 VDACGLLLAFAFPDRIGQRRPDGRFLLRNGRGAAFADVQPLCNSPYLVAAELDDQGPESR 614 Query: 134 IMLAADLPEADLLKYHKDSLQEEREVYWDKESGSVQARRRTLLGALILKETSHERPTAKE 193 I+LAA + DL +Y +++ER V W++ S +V+AR+R LGAL+L+E S + Sbjct: 615 IILAAPVESEDLERYFGGQIEKERLVVWERSSQAVRARQRERLGALVLRERSLADVEPEA 674 Query: 194 TEEVLLRVIAEEGLKLLPWDKATVQLRQRMEFLHGLRPDFPDVSEEALLSTLQEWLLPFI 253 ++ LL + EEGL +L W KA Q ++R++F+ D+ D S+EALL+ L++WL P + Sbjct: 675 IQKALLAGVREEGLAILSWTKAARQFQERLQFMARWDDDWLDASDEALLAKLEDWLGPHL 734 Query: 254 QGMRNLRDLQRVPVSRALEGLLDWNSRQLLDREAPAHITVPSGSRIPVDYSSPSAPVLAV 313 GM++ DLQR+ V LE L W+ R+ LD AP HI VPSG R+P+DY +P APVLAV Sbjct: 735 YGMKSRNDLQRLDVREILEATLTWDRRRELDECAPTHILVPSGRRVPIDYGTPEAPVLAV 794 Query: 314 RLQEMFGQADTPRIGGGKVAVLLHLLSPARRPVQVTADLASFWRSTYFEVKKDLKGRYPK 373 RLQEMFG DTPRI G+V + LHLLSPA+RPVQVT DLASFWR YFEV+KDLKGRYPK Sbjct: 795 RLQEMFGLKDTPRICRGRVPLTLHLLSPAQRPVQVTQDLASFWRDAYFEVRKDLKGRYPK 854 Query: 374 HYWPDDPLQAAPTNRTRP 391 HYWP+DP +A PT+R RP Sbjct: 855 HYWPEDPREAIPTSRVRP 872 >B1DLS9.1 B1DLS9_9BACL ATP-dependent helicase HrpB Length = 830 Score = 342 bits (876), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 191/394 (48%), Positives = 254/394 (64%), Gaps = 11/394 (2%) Query: 3 KLAALLQERDLLQGPAALDSDLTLRVEALLRFERXXXXXXXXXXXXLRAVQRESRSFLAQ 62 +LA LL ERDLL P + D+ LR+EAL ++ ++ +++ + Sbjct: 441 ELAGLLSERDLL--PHERNVDVALRLEALY----GAGGRMEADRGAVQRIKAQAKQWRQM 494 Query: 63 LTAAPGALPDN-----ISLTGLLLSFAYPDRIGQKRGDGAFLLSGGRGAAMREGQPLTRS 117 +T N S GLL++ AYPDRI Q+R DG +LL+ GRGAA+ E QPL+RS Sbjct: 495 VTNNSIERKGNWNWQGTSYAGLLIALAYPDRIAQRRADGRYLLANGRGAALPELQPLSRS 554 Query: 118 PYIVAAGIDDRAGQSRIMLAADLPEADLLKYHKDSLQEEREVYWDKESGSVQARRRTLLG 177 ++ AA +DD +SRI LAA+L L + + Q E V WD + +V+ARRR LG Sbjct: 555 AFLAAAELDDAGSESRIRLAAELDLDMLEQAAGEQFQVEESVEWDSGAQAVRARRRVRLG 614 Query: 178 ALILKETSHERPTAKETEEVLLRVIAEEGLKLLPWDKATVQLRQRMEFLHGLRPDFPDVS 237 ++ILKET ++P+ ++ L IA GL LL KA QL+ RM+ + +PDVS Sbjct: 615 SIILKETPIQQPSPEQIAIALADGIASAGLGLLSMPKAARQLQARMQLMARHNSGWPDVS 674 Query: 238 EEALLSTLQEWLLPFIQGMRNLRDLQRVPVSRALEGLLDWNSRQLLDREAPAHITVPSGS 297 E ALL+T+ +WLLP + GM+N DLQR+ + + LEGL+ W RQ LD + P H+TVPSGS Sbjct: 675 EAALLATVHDWLLPHLYGMKNKSDLQRLNMVQILEGLMSWGQRQELDEQVPTHMTVPSGS 734 Query: 298 RIPVDYSSPSAPVLAVRLQEMFGQADTPRIGGGKVAVLLHLLSPARRPVQVTADLASFWR 357 RIP+DYS P AP +AVRLQE+FG +TPR+ GG++ + LHLLSP++RPVQVT DL SFW Sbjct: 735 RIPIDYSDPDAPFIAVRLQELFGLQETPRLAGGRLPLTLHLLSPSQRPVQVTRDLRSFWN 794 Query: 358 STYFEVKKDLKGRYPKHYWPDDPLQAAPTNRTRP 391 YFEVKKDLKGRYPKHYWPDDP A PTNR +P Sbjct: 795 EAYFEVKKDLKGRYPKHYWPDDPYAAQPTNRVKP 828 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,242,870,023 Number of extensions: 93242447 Number of successful extensions: 228666 Number of sequences better than 1.0e-05: 511 Number of HSP's gapped: 227195 Number of HSP's successfully gapped: 513 Length of query: 393 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 255 Effective length of database: 1,760,596,133 Effective search space: 448952013915 Effective search space used: 448952013915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)