BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0396.0002.p
         (218 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K9W1.1 B3K9W1_9BACI Putative uncharacterized protein                 91   5e-17
B3KIR6.1 B3KIR6_9BACI Putative uncharacterized protein                 82   3e-14
A9U712.1 A9U712_PHYPA Predicted protein                                72   3e-11

>B3K9W1.1 B3K9W1_9BACI Putative uncharacterized protein
          Length = 225

 Score = 91.3 bits (225), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 93/218 (42%), Gaps = 6/218 (2%)

Query: 1   VTDKIVGVFDTEQEATRAIEGLQRQGVSNDEISVITRDRDELKNISDDTGTMXXXXXXXX 60
           +T KIVG F TEQEATRAIE L++QG   DEISVI +DR E  +I D+TGT         
Sbjct: 1   MTQKIVGAFRTEQEATRAIEELKQQGFRADEISVIAKDRGESSHIQDETGTKAPEGLASG 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLSXXXXXXXXXXXXXXXXXXXXP 120
                                               TL+                    P
Sbjct: 61  AATGGVLGGVTGLLAGLGALAIPGIGPIIAAGPIAATLTGAAVGAGAGGLVGGLIGLGIP 120

Query: 121 EDEAKEYEGYVDSGKILVLVD-DNGRGRDIHNVFQGNRSLNASRYDSLYNDNTLNDPITD 179
           ED+A+EY GYVD G ILV+VD D   G  ++++F+ N +LN   Y      +    P+  
Sbjct: 121 EDQAEEYGGYVDEGHILVMVDADESNGGQVYDIFRSNSALNEHHYREEGTYSGTGAPVDS 180

Query: 180 R----GATNPGVVRDDTTVGNALGNRGSMNAD-TDPDR 212
           R     AT   V   +   G   GN G+++ +   PDR
Sbjct: 181 RSEAAAATEDAVPDPNLYQGYGDGNGGAVSPNIVSPDR 218


>B3KIR6.1 B3KIR6_9BACI Putative uncharacterized protein
          Length = 183

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 78/180 (43%), Gaps = 2/180 (1%)

Query: 4   KIVGVFDTEQEATRAIEGLQRQGVSNDEISVITRDRDELKNISDDTGTMXXXXXXXXXXX 63
           K+VGVF +EQEA +AIE LQR G+ ND IS+I +D+ E   I++ TGTM           
Sbjct: 4   KVVGVFRSEQEAAQAIEQLQRHGIPNDAISIIAKDKREADMIAEQTGTMAPEGVAAGAAT 63

Query: 64  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLSXXXXXXXXXXXXXXXXXXXXPEDE 123
                                            TL+                    PEDE
Sbjct: 64  GGILGGTAGLLAGLGALAIPGIGPILAAGPIAATLTGAAVGAGAGGLVGGFIGLGIPEDE 123

Query: 124 AKEYEGYVDSGKILVLVDDNGRGRDIHNVFQGNRSLNASRYDSLYNDNTLNDPITDRGAT 183
           AKEYE YV+ G+ILV+VD +     I+++F+     N  RY +   D   +D +  RG T
Sbjct: 124 AKEYESYVEQGRILVMVDADQENTGIYDIFRDYDYRNEGRYGA--ADPDRDDTLPPRGTT 181


>A9U712.1 A9U712_PHYPA Predicted protein
          Length = 546

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/46 (73%), Positives = 38/46 (82%)

Query: 120 PEDEAKEYEGYVDSGKILVLVDDNGRGRDIHNVFQGNRSLNASRYD 165
           PEDEAKEYE YVD GKILV+VD  GR RDI++VF  NRSLNA RY+
Sbjct: 480 PEDEAKEYETYVDKGKILVIVDARGRDRDIYDVFNRNRSLNAERYN 525


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.310    0.132    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 974,082,081
Number of extensions: 36037813
Number of successful extensions: 73407
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 73407
Number of HSP's successfully gapped: 4
Length of query: 218
Length of database: 3,060,696,203
Length adjustment: 130
Effective length of query: 88
Effective length of database: 1,835,964,253
Effective search space: 161564854264
Effective search space used: 161564854264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 128 (53.9 bits)