BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0394.0004.p
         (73 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1KWY0.1 B1KWY0_CLOBM ABC transporter, ATP-binding protein            113   5e-24
B1Q6Q5.1 B1Q6Q5_CLOBO ABC transporter, ATP-binding protein            113   7e-24
C3L275.1 C3L275_CLOB6 ABC transporter, ATP-binding protein            113   7e-24
B1QLV7.1 B1QLV7_CLOBO ABC transporter, ATP-binding protein            113   7e-24
C1FUL5.1 C1FUL5_CLOBJ ABC transporter, ATP-binding protein            112   9e-24

>B1KWY0.1 B1KWY0_CLOBM ABC transporter, ATP-binding protein
          Length = 230

 Score =  113 bits (283), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/67 (79%), Positives = 61/67 (91%)

Query: 1   MGLLGLTERRQHLPSELSGGQQQRTAIGRALINKPSIILADEPTGNLDSKNSKEIMDLLT 60
           + +LGL ER+ HLPS+LSGGQQQR +IGRAL NKPSIILADEPTGNLDSKNSKEI++LL 
Sbjct: 126 LDILGLRERKSHLPSQLSGGQQQRVSIGRALANKPSIILADEPTGNLDSKNSKEIIELLR 185

Query: 61  FSVKKYN 67
           +SVKKYN
Sbjct: 186 YSVKKYN 192


>B1Q6Q5.1 B1Q6Q5_CLOBO ABC transporter, ATP-binding protein
          Length = 230

 Score =  113 bits (282), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 53/67 (79%), Positives = 61/67 (91%)

Query: 1   MGLLGLTERRQHLPSELSGGQQQRTAIGRALINKPSIILADEPTGNLDSKNSKEIMDLLT 60
           + +LGL ER+ HLPS+LSGGQQQR +IGRAL NKPSIILADEPTGNLDSKNSKEI++LL 
Sbjct: 126 LDILGLRERKNHLPSQLSGGQQQRVSIGRALANKPSIILADEPTGNLDSKNSKEIIELLR 185

Query: 61  FSVKKYN 67
           +SVKKYN
Sbjct: 186 YSVKKYN 192


>C3L275.1 C3L275_CLOB6 ABC transporter, ATP-binding protein
          Length = 230

 Score =  113 bits (282), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 53/67 (79%), Positives = 61/67 (91%)

Query: 1   MGLLGLTERRQHLPSELSGGQQQRTAIGRALINKPSIILADEPTGNLDSKNSKEIMDLLT 60
           + +LGL ER+ HLPS+LSGGQQQR +IGRAL NKPSIILADEPTGNLDSKNSKEI++LL 
Sbjct: 126 LDILGLRERKNHLPSQLSGGQQQRVSIGRALANKPSIILADEPTGNLDSKNSKEIIELLR 185

Query: 61  FSVKKYN 67
           +SVKKYN
Sbjct: 186 YSVKKYN 192


>B1QLV7.1 B1QLV7_CLOBO ABC transporter, ATP-binding protein
          Length = 230

 Score =  113 bits (282), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 53/67 (79%), Positives = 61/67 (91%)

Query: 1   MGLLGLTERRQHLPSELSGGQQQRTAIGRALINKPSIILADEPTGNLDSKNSKEIMDLLT 60
           + +LGL ER+ HLPS+LSGGQQQR +IGRAL NKPSIILADEPTGNLDSKNSKEI++LL 
Sbjct: 126 LDILGLRERKNHLPSQLSGGQQQRVSIGRALANKPSIILADEPTGNLDSKNSKEIIELLR 185

Query: 61  FSVKKYN 67
           +SVKKYN
Sbjct: 186 YSVKKYN 192


>C1FUL5.1 C1FUL5_CLOBJ ABC transporter, ATP-binding protein
          Length = 230

 Score =  112 bits (281), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 52/67 (77%), Positives = 60/67 (89%)

Query: 1   MGLLGLTERRQHLPSELSGGQQQRTAIGRALINKPSIILADEPTGNLDSKNSKEIMDLLT 60
           + +LGL ER+ HLP++LSGGQQQR +IGRAL NKPSII ADEPTGNLDSKNSKEIM+LL 
Sbjct: 126 LDILGLRERKNHLPAQLSGGQQQRVSIGRALANKPSIIFADEPTGNLDSKNSKEIMELLR 185

Query: 61  FSVKKYN 67
           +SVKKYN
Sbjct: 186 YSVKKYN 192


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.132    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 399,169,524
Number of extensions: 13645454
Number of successful extensions: 138313
Number of sequences better than 1.0e-05: 18222
Number of HSP's gapped: 138596
Number of HSP's successfully gapped: 18299
Length of query: 73
Length of database: 3,060,696,203
Length adjustment: 44
Effective length of query: 29
Effective length of database: 2,646,171,543
Effective search space: 76738974747
Effective search space used: 76738974747
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)