BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0394.0003.p
         (126 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1B827.1 B1B827_CLOBO Lipoprotein-releasing system ATP-binding p...   110   4e-23
C1FUL5.1 C1FUL5_CLOBJ ABC transporter, ATP-binding protein            110   5e-23
B1IFA6.1 B1IFA6_CLOBK ABC transporter, ATP-binding protein            110   6e-23
A7FS40.1 A7FS40_CLOB1 ABC transporter, ATP-binding protein            110   6e-23
A5HZX6.1 A5HZX6_CLOBH ABC transporter, ATP-binding protein            110   6e-23

>B1B827.1 B1B827_CLOBO Lipoprotein-releasing system ATP-binding protein
          LolD EC=3.6.3.-
          Length = 228

 Score =  110 bits (275), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 69/86 (80%), Gaps = 5/86 (5%)

Query: 1  VEILKTDNLCKNYGNAEAKVEALKNVXXXXXXXSVQQGEFVAIVGASGSGKSTLMHLLGG 60
          +E+++ +NLCK+YG  E KV+ALKN+       ++ +GEFVAIVGASGSGKSTL+HLLGG
Sbjct: 1  MELVRVENLCKSYGKGEVKVDALKNINM-----TINKGEFVAIVGASGSGKSTLLHLLGG 55

Query: 61 VDRPSSGRVIIDGMDIYSRSEEELAV 86
          VD P+ GRVI+DG+DIYS  E EL++
Sbjct: 56 VDIPTKGRVILDGVDIYSLKERELSI 81


>C1FUL5.1 C1FUL5_CLOBJ ABC transporter, ATP-binding protein
          Length = 230

 Score =  110 bits (274), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 68/86 (79%), Gaps = 5/86 (5%)

Query: 1  VEILKTDNLCKNYGNAEAKVEALKNVXXXXXXXSVQQGEFVAIVGASGSGKSTLMHLLGG 60
          +E+LK  +LCK+YG  E KV+ALK++       ++ QGEFVAIVG SGSGKSTL+HLLGG
Sbjct: 1  MELLKVKDLCKSYGKGEIKVDALKSINL-----TINQGEFVAIVGPSGSGKSTLLHLLGG 55

Query: 61 VDRPSSGRVIIDGMDIYSRSEEELAV 86
          VDRPSSG++I++G DIYS  E ELA+
Sbjct: 56 VDRPSSGKIILEGTDIYSLKENELAI 81


>B1IFA6.1 B1IFA6_CLOBK ABC transporter, ATP-binding protein
          Length = 230

 Score =  110 bits (274), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 68/86 (79%), Gaps = 5/86 (5%)

Query: 1  VEILKTDNLCKNYGNAEAKVEALKNVXXXXXXXSVQQGEFVAIVGASGSGKSTLMHLLGG 60
          +E+LK  +LCK+YG  E KV+ALK++       ++ QGEFVAIVG SGSGKSTL+HLLGG
Sbjct: 1  MELLKVKDLCKSYGKGEIKVDALKSINL-----TINQGEFVAIVGPSGSGKSTLLHLLGG 55

Query: 61 VDRPSSGRVIIDGMDIYSRSEEELAV 86
          VDRPSSG++I++G DIYS  E ELA+
Sbjct: 56 VDRPSSGKIILEGTDIYSLKENELAI 81


>A7FS40.1 A7FS40_CLOB1 ABC transporter, ATP-binding protein
          Length = 230

 Score =  110 bits (274), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 68/86 (79%), Gaps = 5/86 (5%)

Query: 1  VEILKTDNLCKNYGNAEAKVEALKNVXXXXXXXSVQQGEFVAIVGASGSGKSTLMHLLGG 60
          +E+LK  +LCK+YG  E KV+ALK++       ++ QGEFVAIVG SGSGKSTL+HLLGG
Sbjct: 1  MELLKVKDLCKSYGKGEIKVDALKSINL-----TINQGEFVAIVGPSGSGKSTLLHLLGG 55

Query: 61 VDRPSSGRVIIDGMDIYSRSEEELAV 86
          VDRPSSG++I++G DIYS  E ELA+
Sbjct: 56 VDRPSSGKIILEGTDIYSLKENELAI 81


>A5HZX6.1 A5HZX6_CLOBH ABC transporter, ATP-binding protein
          Length = 230

 Score =  110 bits (274), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 68/86 (79%), Gaps = 5/86 (5%)

Query: 1  VEILKTDNLCKNYGNAEAKVEALKNVXXXXXXXSVQQGEFVAIVGASGSGKSTLMHLLGG 60
          +E+LK  +LCK+YG  E KV+ALK++       ++ QGEFVAIVG SGSGKSTL+HLLGG
Sbjct: 1  MELLKVKDLCKSYGKGEIKVDALKSINL-----TINQGEFVAIVGPSGSGKSTLLHLLGG 55

Query: 61 VDRPSSGRVIIDGMDIYSRSEEELAV 86
          VDRPSSG++I++G DIYS  E ELA+
Sbjct: 56 VDRPSSGKIILEGTDIYSLKENELAI 81


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.312    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 637,174,117
Number of extensions: 20723737
Number of successful extensions: 202984
Number of sequences better than 1.0e-05: 6979
Number of HSP's gapped: 204312
Number of HSP's successfully gapped: 6981
Length of query: 126
Length of database: 3,060,696,203
Length adjustment: 91
Effective length of query: 35
Effective length of database: 2,203,383,838
Effective search space: 77118434330
Effective search space used: 77118434330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 126 (53.1 bits)