BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0394.0001.p (235 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q894W6.1 Q894W6_CLOTE Putative permease 153 9e-36 B3KET5.1 B3KET5_9BACI Putative uncharacterized protein 100 2e-19 C0EGA4.1 C0EGA4_9CLOT Putative uncharacterized protein 98 5e-19 Q8ETA1.1 Q8ETA1_OCEIH Hypothetical conserved protein 98 7e-19 A7GBS8.1 A7GBS8_CLOBL ABC transporter, permease protein 96 2e-18 >Q894W6.1 Q894W6_CLOTE Putative permease Length = 875 Score = 153 bits (387), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 88/229 (38%), Positives = 130/229 (56%), Gaps = 9/229 (3%) Query: 1 LKSYTDLTGKYIKGQKKRSLLTIFGIILSVTLLTSIGTIGMSYWDKSVRQTLRDFGDYHV 60 +K Y LT +Y+K QKKR++LTI GI+LSV L+T+IGT+ +S K + ++D G YH Sbjct: 1 MKKYGHLTYRYLKEQKKRTILTILGIVLSVALVTAIGTMLVSIKTKFISDCIKDKGHYHG 60 Query: 61 SLNGISGEAVPKVKNNATVKSAGVISREGYAVIKEANEKEKKEDPFAAPYRYLNVKEYDA 120 GI+ + V K+ NN V + V S + A+I +++E+ +P A +RYLN+K Y + Sbjct: 61 EFVGINKKDVNKINNNVDVDNISVTSNDTTAIISNISKEERDANPSAPLHRYLNIKAYGS 120 Query: 121 SAMNMLQSQLDSGRYPENPNEIILPSSSLSYFSEKPKLGETITLNLGIRKVASTGENKKI 180 SA++M+ + GR P+ NEI+L Y S KPK+G+ I L++G R V G Sbjct: 121 SALSMIPINVKEGRLPQKENEIVLEYWVPDYLSGKPKIGDKIKLDIGKRIVKEKGSK--- 177 Query: 181 YGLGDYGWDLDETFQAQSQKEYTVVGFMKPSSTGGWSSRYIFPAITFND 229 D + ETF ++EYT+VG P + W YI ITF D Sbjct: 178 ----DGEGETKETFNKTGKREYTIVGVTAPKFS--WPGVYITQGITFLD 220 >B3KET5.1 B3KET5_9BACI Putative uncharacterized protein Length = 863 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 31/226 (13%) Query: 7 LTGKYIKGQKKRSLLTIFGIILSVTLLTSIGTIGMSYWDKSVRQTLRDFGDYHVSLNGIS 66 L + +K K+R+L+TI G+I+SV ++T++ T+ S+ D +RQT+ D G++HV ++ Sbjct: 7 LAIRNLKQNKRRTLVTIIGVIISVAMVTAVATLVFSFSDLMIRQTIADSGEWHVQYQDVT 66 Query: 67 GEAVPKVKNNATVKSAGVISREGYAVIKEANEKEKKEDPFAAPYRYLNVKEYDASAMNML 126 E + ++ + K+ + G+A ++ K YL +KEYDA Sbjct: 67 KEQLAAIQADEATKTVAITRDLGFAPLEGGQNPNKP---------YLFIKEYDAQGFTQF 117 Query: 127 QSQLDSGRYPENPNEIILPSSSLSYFSEKPKLGETITLNLGIRKVASTGENKKIYGLGDY 186 Q +L GR P E+++ ++ K ++G+ +TL +G ++ GD+ Sbjct: 118 QVELSKGRLPLTDKEVVISEPVVTNAKVKYEIGDRLTLRIG----------ERFEQGGDH 167 Query: 187 GWD-----------LDETFQAQSQKEYTVVGFMK-PSSTGGWSSRY 220 D L ET Q ++YTVVG++K P WS Y Sbjct: 168 PLDQTEPLRREEGALTETLQHIETRDYTVVGYIKRPEWETAWSPGY 213 >C0EGA4.1 C0EGA4_9CLOT Putative uncharacterized protein Length = 881 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 111/226 (49%), Gaps = 20/226 (8%) Query: 7 LTGKYIKGQKKRSLLTIFGIILSVTLLTSIGTIGMSYWDKSVRQTLRDFGDYHVSLNGIS 66 LT +++K KKR+L+T+ G+I+SVT++T++ T S+ + G++HV I Sbjct: 7 LTLRHLKLNKKRTLVTVIGVIISVTMITAVATFAESFLGTMRNYQVESGGNWHVFYGEIP 66 Query: 67 GEAVPKVKNNATVKSAGVISREGYAVIKEANEKEKKEDPFAAPYRYLNVKEYDASAMNML 126 + + + N+ K A + EGYA K E P + YL VK+Y Sbjct: 67 ADKLDIIYNDKDTKHAILSRDEGYA---------KLEAPQSKSQPYLFVKDYSEQGFTNF 117 Query: 127 QSQLDSGRYPENPNEIILPSSSLSYFSEKPKLGETITLNLGIRKVA----STGENKKIYG 182 +L GR+P+N +EIIL S + S ++G+T+TL +G R TGE + + Sbjct: 118 PVKLLEGRFPQNSSEIILQKSLIESGSLSCQVGDTLTLQVGSRTATVEDHRTGEVQTLED 177 Query: 183 LGDYGWDLD-ETFQAQSQKEYTVVGFM-KPSSTGGWSSRYIFPAIT 226 L + ET + S K YTVVGFM KP W+ P IT Sbjct: 178 LDQRTIVQEGETLEHTSSKSYTVVGFMEKPGFENDWA-----PGIT 218 >Q8ETA1.1 Q8ETA1_OCEIH Hypothetical conserved protein Length = 868 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 97/163 (59%), Gaps = 12/163 (7%) Query: 7 LTGKYIKGQKKRSLLTIFGIILSVTLLTSIGTIGMSYWDKSVRQTLRDFGDYHVSLNGIS 66 +T +++K K+R+L+TI G+I+SV ++T++ T+G S+ D + RQT+ + G++H S ++ Sbjct: 7 VTIRHLKENKRRTLVTILGVIISVAMITAVATLGQSFLDLNQRQTIENTGEWHYSYTNLN 66 Query: 67 GEAVPKVKNNATVKSAGVISREGYAVIKEANEKEKKEDPFAAPYRYLNVKEYDASAMNML 126 + VK + +S G+++ GY+ + K PY Y V + + + M+ Sbjct: 67 EQQYQAVKEHDKTESIGLMNELGYSPLDGEGSK---------PYVY--VHQLNKAGMDQF 115 Query: 127 QSQLDSGRYPENPNEIILPSSSLSYFSEKPKLGETITLNLGIR 169 Q +L GR PENP+E++L + L +K ++G+TITL +G R Sbjct: 116 QVKLQDGRLPENPDEVVLSETLLQSGYDK-EIGDTITLEVGER 157 >A7GBS8.1 A7GBS8_CLOBL ABC transporter, permease protein Length = 871 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 110/209 (52%), Gaps = 15/209 (7%) Query: 7 LTGKYIKGQKKRSLLTIFGIILSVTLLTSIGTIGMSYWDKSVRQTLRDFGDYHVSLNGIS 66 LT +Y+K KKR+L+TI G+I+S ++T + T+G+S+ D RQ + D G++HV I+ Sbjct: 7 LTLRYMKLNKKRTLITIIGVIISAAMITGVATLGISFMDLEKRQIISDEGEWHVIYKDIN 66 Query: 67 GEAVPKVKNNATVKSAGVISREGYAVIKEANEKEKKEDPFAAPYRYLNVKEYDASAMNML 126 + +KN+ K + G A++ ++ K + PY + ++EY+ Sbjct: 67 NTQLQAIKNDKETKQIMLSRDLGCALLNQSRNKSR-------PYMF--IREYNKEGFEKF 117 Query: 127 QSQLDSGRYPENPNEIILPSSSLSYFSEKPKLGETITLNLGIR-KVASTGENKKIYGLGD 185 +L GR+P+ NE+++ + ++ K+G+ IT+++G R S G+N+ + D Sbjct: 118 PIELVEGRFPKTENEVVISDAIINNAKVNYKIGDIITVDIGKRYSKDSKGKNEALIQYSD 177 Query: 186 YGWD-----LDETFQAQSQKEYTVVGFMK 209 D ++E ++ K Y +VG +K Sbjct: 178 LKKDKNTNTVEEFLIKENTKTYKIVGVIK 206 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.132 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,395,509,124 Number of extensions: 57100406 Number of successful extensions: 116278 Number of sequences better than 1.0e-05: 72 Number of HSP's gapped: 116237 Number of HSP's successfully gapped: 72 Length of query: 235 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 104 Effective length of database: 1,826,543,238 Effective search space: 189960496752 Effective search space used: 189960496752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 129 (54.3 bits)