BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0391.0040.p
         (86 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K6D6.1 B3K6D6_9BACI Cytochrome aa3 quinol oxidase, subunit IV        99   1e-19
A3IF58.1 A3IF58_9BACI Cytochrome aa3 quinol oxidase subunit IV         73   1e-11
B1HVF4.1 B1HVF4_LYSSC Cytochrome aa3 quinol oxidase subunit IV E...    72   1e-11
A3IA77.1 A3IA77_9BACI Cytochrome aa3 quinol oxidase subunit IV         69   1e-10
Q2B4I1.1 Q2B4I1_9BACI Cytochrome aa3 quinol oxidase subunit IV         69   1e-10

>B3K6D6.1 B3K6D6_9BACI Cytochrome aa3 quinol oxidase, subunit IV
          Length = 95

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/67 (68%), Positives = 59/67 (88%), Gaps = 1/67 (1%)

Query: 20 DLSKGANMAVLLVTAIIQASLQLFVFMHIGEAADTKKELYINIAYALFVGLVTIFGTLYI 79
          D+   + +AVLLVTAI+QA++QL +FMH+GE+ D KK +YINIA+ALFVGLVTIFGTL+I
Sbjct: 30 DMPAASKVAVLLVTAILQAAVQLMLFMHVGESED-KKSVYINIAFALFVGLVTIFGTLFI 88

Query: 80 FVWGWYA 86
          F+WGWYA
Sbjct: 89 FIWGWYA 95


>A3IF58.1 A3IF58_9BACI Cytochrome aa3 quinol oxidase subunit IV
          Length = 93

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 49/65 (75%), Gaps = 1/65 (1%)

Query: 20 DLSKGANMAVLLVTAIIQASLQLFVFMHIGEAADTKKELYINIAYALFVGLVTIFGTLYI 79
          D+S     A+LLVTA+ QA++QL +FMHIGE+ D KK LY  I Y++FVG+VTI GTL+ 
Sbjct: 30 DMSYKVAFAILLVTALAQATVQLVLFMHIGESED-KKTLYTTILYSVFVGVVTIIGTLFA 88

Query: 80 FVWGW 84
           +WG+
Sbjct: 89 MIWGY 93


>B1HVF4.1 B1HVF4_LYSSC Cytochrome aa3 quinol oxidase subunit IV EC=1.9.3.-
          Length = 93

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 49/65 (75%), Gaps = 1/65 (1%)

Query: 20 DLSKGANMAVLLVTAIIQASLQLFVFMHIGEAADTKKELYINIAYALFVGLVTIFGTLYI 79
          D+S     A+LLVTA+ QA++QL +FMHIGE+ D KK LY  I Y++FVG+VTI GTL+ 
Sbjct: 30 DMSYKMAFAILLVTALAQATVQLVLFMHIGESED-KKTLYTTILYSVFVGVVTIIGTLFA 88

Query: 80 FVWGW 84
           +WG+
Sbjct: 89 MIWGY 93


>A3IA77.1 A3IA77_9BACI Cytochrome aa3 quinol oxidase subunit IV
          Length = 94

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 1  MGYXXXXXXXXXXXXXXYGDLSKGANMAVLLVTAIIQASLQLFVFMHIGEAADTKKELYI 60
          MG+              +  +S    M +LLVTA IQA LQL VFMH GE  D K  +Y 
Sbjct: 11 MGFALSIILTIIAACVYFFQISMPITMTILLVTAFIQAGLQLVVFMHAGETND-KPAIYT 69

Query: 61 NIAYALFVGLVTIFGTLYIFVWGW 84
          NI Y L + LVTIFGTL   +WG+
Sbjct: 70 NIYYGLVIALVTIFGTLLCMIWGY 93


>Q2B4I1.1 Q2B4I1_9BACI Cytochrome aa3 quinol oxidase subunit IV
          Length = 84

 Score = 68.9 bits (167), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 1  MGYXXXXXXXXXXXXXXYGDLSKGANMAVLLVTAIIQASLQLFVFMHIGEAADTKKELYI 60
          MG+              + D+S    + +L++TA IQA+LQL VFMH GE +D K  ++ 
Sbjct: 1  MGFVFSLILTAVALMVYFFDMSYAVGLTILVITAFIQAALQLVVFMHAGE-SDDKGTIFT 59

Query: 61 NIAYALFVGLVTIFGTLYIFVWGW 84
          NI Y++F+ LVT+FGTL   +WG+
Sbjct: 60 NIYYSIFIALVTVFGTLLTMIWGY 83


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.330    0.144    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 353,726,660
Number of extensions: 10153128
Number of successful extensions: 38394
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 38441
Number of HSP's successfully gapped: 7
Length of query: 86
Length of database: 3,060,696,203
Length adjustment: 56
Effective length of query: 30
Effective length of database: 2,533,119,363
Effective search space: 75993580890
Effective search space used: 75993580890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 125 (52.8 bits)