BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0391.0039.p (198 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6D5.1 B3K6D5_9BACI Cytochrome aa3 quinol oxidase, subunit III 305 2e-81 A3IF59.1 A3IF59_9BACI Cytochrome aa3 quinol oxidase subunit III 291 2e-77 B1HVF3.1 B1HVF3_LYSSC Quinol oxidase subunit 3 EC=1.10.3.- 290 7e-77 Q2B4I2.1 Q2B4I2_9BACI Cytochrome aa3 quinol oxidase subunit III 274 3e-72 B1HMP9.1 B1HMP9_LYSSC Cytochrome aa3 quinol oxidase subunit III ... 249 9e-65 >B3K6D5.1 B3K6D5_9BACI Cytochrome aa3 quinol oxidase, subunit III Length = 198 Score = 305 bits (780), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 149/198 (75%), Positives = 170/198 (85%) Query: 1 MKIDASKPLEYSTEENSNKIFGFWVFLGAEIPLFATLFTVYFVMVDRFASGPSGSELFEI 60 MKIDA++PLEY TEEN N+IFGFW+FLGAEI LFATLFTVYFV+V+RFASGPSG+E+FEI Sbjct: 1 MKIDATQPLEYGTEENRNRIFGFWLFLGAEIALFATLFTVYFVLVNRFASGPSGAEIFEI 60 Query: 61 GPVLIETFLLLTSSFTIGLAVHAMRLGYKKAMMVLMAITLLMGLGFIGIEIDEFFTYVHE 120 PVL+ETFLLLTSSFTIGLAVHAMRLG KK MM+ M ITLL+G GF+GIEI EFFTYVHE Sbjct: 61 TPVLLETFLLLTSSFTIGLAVHAMRLGLKKQMMIFMVITLLLGAGFLGIEIFEFFTYVHE 120 Query: 121 GATLQTXXXXXXXXXXXXTHGAHVSFGFLWGTAIMIQVWRQGINPATANKAFIFSLFWHF 180 G TL T THGAHV+FG LWGTAI+IQ+ + G++ +TANK+FIFSL+WHF Sbjct: 121 GVTLSTSAFSSSLFTLLGTHGAHVTFGLLWGTAILIQLKKHGLDHSTANKSFIFSLYWHF 180 Query: 181 LDVVWIFIFSFVYLKGLM 198 LDVVWIFIFSFVYLKGLM Sbjct: 181 LDVVWIFIFSFVYLKGLM 198 >A3IF59.1 A3IF59_9BACI Cytochrome aa3 quinol oxidase subunit III Length = 203 Score = 291 bits (745), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 145/198 (73%), Positives = 163/198 (82%) Query: 1 MKIDASKPLEYSTEENSNKIFGFWVFLGAEIPLFATLFTVYFVMVDRFASGPSGSELFEI 60 MKID+S PLEYSTEEN KIFGFW+FLGAEI LFATLFTVYF + R SGP+G+E+FE+ Sbjct: 5 MKIDSSLPLEYSTEENRLKIFGFWIFLGAEIVLFATLFTVYFTLHTRTGSGPNGAEIFEL 64 Query: 61 GPVLIETFLLLTSSFTIGLAVHAMRLGYKKAMMVLMAITLLMGLGFIGIEIDEFFTYVHE 120 PVL ETFLLLTSSFTIGL VHAMR+G KKAMM ITLL+GLGF+ IEIDEF TYVHE Sbjct: 65 TPVLWETFLLLTSSFTIGLGVHAMRIGRKKAMMTFFIITLLLGLGFLAIEIDEFITYVHE 124 Query: 121 GATLQTXXXXXXXXXXXXTHGAHVSFGFLWGTAIMIQVWRQGINPATANKAFIFSLFWHF 180 GAT+QT THGAHV+FGF WG AI+IQV ++G+NP TANKAFIFSL+WHF Sbjct: 125 GATIQTSAFLSSLMTLLGTHGAHVTFGFFWGLAIIIQVAKRGLNPQTANKAFIFSLYWHF 184 Query: 181 LDVVWIFIFSFVYLKGLM 198 LDVVWIFIFSFVYLKGL+ Sbjct: 185 LDVVWIFIFSFVYLKGLI 202 >B1HVF3.1 B1HVF3_LYSSC Quinol oxidase subunit 3 EC=1.10.3.- Length = 199 Score = 290 bits (741), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 144/198 (72%), Positives = 163/198 (82%) Query: 1 MKIDASKPLEYSTEENSNKIFGFWVFLGAEIPLFATLFTVYFVMVDRFASGPSGSELFEI 60 MKID+S PLEYSTEEN KIFGFW+FLGAEI LFATLFTVYF + R +GP+G+E+FE+ Sbjct: 1 MKIDSSLPLEYSTEENRLKIFGFWIFLGAEIVLFATLFTVYFTLHTRTGNGPNGAEIFEL 60 Query: 61 GPVLIETFLLLTSSFTIGLAVHAMRLGYKKAMMVLMAITLLMGLGFIGIEIDEFFTYVHE 120 PVL ETFLLLTSSFTIGL VHAMR+G KKAMM ITLL+GLGF+ IEIDEF TYVHE Sbjct: 61 TPVLWETFLLLTSSFTIGLGVHAMRIGRKKAMMTFFIITLLLGLGFLAIEIDEFITYVHE 120 Query: 121 GATLQTXXXXXXXXXXXXTHGAHVSFGFLWGTAIMIQVWRQGINPATANKAFIFSLFWHF 180 GAT+QT THGAHV+FGF WG AI+IQV ++G+NP TANKAFIFSL+WHF Sbjct: 121 GATIQTSAFLSSLMTLLGTHGAHVTFGFFWGLAIIIQVAKRGLNPQTANKAFIFSLYWHF 180 Query: 181 LDVVWIFIFSFVYLKGLM 198 LDVVWIFIFSFVYLKGL+ Sbjct: 181 LDVVWIFIFSFVYLKGLI 198 >Q2B4I2.1 Q2B4I2_9BACI Cytochrome aa3 quinol oxidase subunit III Length = 198 Score = 274 bits (700), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 136/198 (68%), Positives = 155/198 (78%) Query: 1 MKIDASKPLEYSTEENSNKIFGFWVFLGAEIPLFATLFTVYFVMVDRFASGPSGSELFEI 60 MKID S PLE+STEEN KI GFW+FLGAEI LFATLF YF +VDR SGPS E+FEI Sbjct: 1 MKIDHSLPLEFSTEENKTKILGFWIFLGAEIMLFATLFAGYFTLVDRTGSGPSAGEIFEI 60 Query: 61 GPVLIETFLLLTSSFTIGLAVHAMRLGYKKAMMVLMAITLLMGLGFIGIEIDEFFTYVHE 120 PVLIETF+LLTSSFTIGLA+HAMRLG KKAM+ IT+L+GLGF+ +EI EF YVH Sbjct: 61 SPVLIETFVLLTSSFTIGLAIHAMRLGNKKAMLAFFGITILLGLGFLSVEIYEFIHYVHI 120 Query: 121 GATLQTXXXXXXXXXXXXTHGAHVSFGFLWGTAIMIQVWRQGINPATANKAFIFSLFWHF 180 GA LQT THG HV+FG WG AIM+QV ++G+NP TANK+FIFSL+WHF Sbjct: 121 GAGLQTSAFTAILLTTLGTHGLHVTFGIFWGLAIMLQVKKRGLNPHTANKSFIFSLYWHF 180 Query: 181 LDVVWIFIFSFVYLKGLM 198 LDVVWIFIFSF+YLKGLM Sbjct: 181 LDVVWIFIFSFIYLKGLM 198 >B1HMP9.1 B1HMP9_LYSSC Cytochrome aa3 quinol oxidase subunit III EC=1.9.3.- Length = 198 Score = 249 bits (636), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 123/198 (62%), Positives = 149/198 (75%) Query: 1 MKIDASKPLEYSTEENSNKIFGFWVFLGAEIPLFATLFTVYFVMVDRFASGPSGSELFEI 60 MKID S PLEYST++N I GFWVF+GAEI LF TLF YFV+VDR +GP+G+++FEI Sbjct: 1 MKIDQSLPLEYSTQQNQLNILGFWVFIGAEIMLFGTLFAAYFVLVDRTGTGPTGADIFEI 60 Query: 61 GPVLIETFLLLTSSFTIGLAVHAMRLGYKKAMMVLMAITLLMGLGFIGIEIDEFFTYVHE 120 PVL ETF+LLTSSFTIGL +HAMR GY KAM+ +TLL+G+ FIG E+ EF YVH Sbjct: 61 TPVLFETFILLTSSFTIGLGIHAMRKGYMKAMITFYVLTLLLGVAFIGFEVYEFIHYVHV 120 Query: 121 GATLQTXXXXXXXXXXXXTHGAHVSFGFLWGTAIMIQVWRQGINPATANKAFIFSLFWHF 180 GA LQT THGAHV+FG WG I+ Q+ +G+ P TANK+FIFSL+WHF Sbjct: 121 GAGLQTSAFTATLLTTLGTHGAHVTFGVFWGMFIVYQLITRGLTPETANKSFIFSLYWHF 180 Query: 181 LDVVWIFIFSFVYLKGLM 198 LDVVWIFIFSF+YLKG++ Sbjct: 181 LDVVWIFIFSFIYLKGMV 198 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.144 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,045,961,467 Number of extensions: 36679109 Number of successful extensions: 142347 Number of sequences better than 1.0e-05: 3518 Number of HSP's gapped: 142245 Number of HSP's successfully gapped: 3521 Length of query: 198 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 69 Effective length of database: 1,845,385,268 Effective search space: 127331583492 Effective search space used: 127331583492 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 127 (53.5 bits)