BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0391.0038.p (648 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6D4.1 B3K6D4_9BACI Cytochrome aa3 quinol oxidase, subunit I E... 1051 0.0 A3IF60.1 A3IF60_9BACI Cytochrome aa3 quinol oxidase subunit I 925 0.0 A3IA75.1 A3IA75_9BACI Cytochrome aa3 quinol oxidase subunit I 865 0.0 B1HMQ0.1 B1HMQ0_LYSSC Cytochrome aa3 quinol oxidase subunit I EC... 862 0.0 Q2B4I3.1 Q2B4I3_9BACI Cytochrome aa3 quinol oxidase subunit I 861 0.0 >B3K6D4.1 B3K6D4_9BACI Cytochrome aa3 quinol oxidase, subunit I EC=1.9.3.1 Length = 647 Score = 1051 bits (2719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 514/648 (79%), Positives = 563/648 (86%), Gaps = 1/648 (0%) Query: 1 MDLDKFKVHGEPLIYGAMVSIALATIGILVGLTYFKKWGYLWREWLTTVDHKKIGVMYIL 60 M D+F V G+PLIYGAMVSI L ++ IL GLTY+KKWGY+WREWLTTVDHK+IGVMYI+ Sbjct: 1 MKWDEFFVTGDPLIYGAMVSIVLVSLAILFGLTYYKKWGYMWREWLTTVDHKRIGVMYII 60 Query: 61 AALLMLFRGGVDAIMMRLQTAAPEMKFLDAQHYNEVFTTHGLIMILFMAMPFIIGLMNVI 120 AL+MLFRGGVDAIMMR QTAAPEMKFL QHYNEVFTTHG+IMILFMAMPFI GLMNVI Sbjct: 61 CALIMLFRGGVDAIMMRAQTAAPEMKFLTGQHYNEVFTTHGVIMILFMAMPFIFGLMNVI 120 Query: 121 VPLQIGARDVAFPRLNAVSFWLFFFGAMLLNISFVIGGSPDAGWSAYFPLASLEFSPTVG 180 VPLQIGARDVAFP+LNA+SFWLFF GAML NISFVIGGSPDAGWSAYFPLAS+EFSPTVG Sbjct: 121 VPLQIGARDVAFPKLNAISFWLFFAGAMLFNISFVIGGSPDAGWSAYFPLASIEFSPTVG 180 Query: 181 NNYYSLALQISGIGTLITGVNFIVTILKMRAPGMKLMKMPMFTWSVLITNVIIVFAFPVL 240 NNYYSL+LQISGIGTL+TG+NFIVTILKMRAPGM LM+MPMFTWSVLIT VII+FAFPVL Sbjct: 181 NNYYSLSLQISGIGTLLTGLNFIVTILKMRAPGMTLMRMPMFTWSVLITCVIIIFAFPVL 240 Query: 241 TVALALMMFDRLFGSQFFTMANGGMDMLWANLFWVWGHPEVYIVILPAFGIYSEIIATFS 300 T+AL LMMFDR+FGSQFFTMANGGMDMLWANLFWVWGHPEVYIVILPAFGI+SEII+ FS Sbjct: 241 TIALLLMMFDRIFGSQFFTMANGGMDMLWANLFWVWGHPEVYIVILPAFGIFSEIISAFS 300 Query: 301 KKNLYGYTXXXXXXXXXXXXXXXXWAHHFYTMGQGAMVNSFFSITTMAIAVPTGVKIFNW 360 KKNLYGY+ WAHHFYTMGQGAMVN FFSITTMAIAVPTG+KIFNW Sbjct: 301 KKNLYGYSSMVLSMAIISGLSFLVWAHHFYTMGQGAMVNGFFSITTMAIAVPTGIKIFNW 360 Query: 361 LFTLRKGRITFTTPMLYTLAFIPIFTIGGVTGVMLAMASADYQYHNTMFLVAHFHYVLIP 420 LFTLRKGRI+FTTPMLY+LAFIPIFTIGGVTGVMLAMASADYQYHNTMFLVAHFHYVLIP Sbjct: 361 LFTLRKGRISFTTPMLYSLAFIPIFTIGGVTGVMLAMASADYQYHNTMFLVAHFHYVLIP 420 Query: 421 GAVFAVIAGFHYWFPKVFGFRLNERLGKHSFWWIVISFNVTXXXXXXXXXXXXTRRMYTY 480 GAVFAVIAGFHYWFPKVFGFRLNE+LGK +FW+I ISFNVT TRR YTY Sbjct: 421 GAVFAVIAGFHYWFPKVFGFRLNEKLGKIAFWFIAISFNVTFFPMFFLGLMGMTRRTYTY 480 Query: 481 SEESGFGPLNMLSFVGAVGLAIGFVLLVYNIYWSTRYMPRDTTSDPWDGRTLEWATHSPM 540 S E+GFGPLNMLS VGAVGLAIGF+LLVYNIYWSTRY PRD T DPWD R+LEW+T SP+ Sbjct: 481 SAETGFGPLNMLSMVGAVGLAIGFILLVYNIYWSTRYEPRDKTGDPWDARSLEWSTPSPV 540 Query: 541 PVYNFAVVPKVQTRDAFWSAKQDNMPLFEDKITKIHMPSNTGKPXXXXXXXXXXXXXXXX 600 PVYNFAV PKV+ RDAFW +K++N PL ++KITKIHMPSNTGKP Sbjct: 541 PVYNFAVTPKVKGRDAFWFSKKNNEPLSDEKITKIHMPSNTGKPFILGIAFFFLGFFLVF 600 Query: 601 SMWIPAIVAGVGVLIMLAAMSFDRDHGYYISVDEVMATEKKLMRGETV 648 S WIP+IVAG+ VLI++A MSFDRDHGYYI V+E++ TE+KL RG+TV Sbjct: 601 SWWIPSIVAGIAVLIIMATMSFDRDHGYYIPVEEIVQTEQKL-RGDTV 647 >A3IF60.1 A3IF60_9BACI Cytochrome aa3 quinol oxidase subunit I Length = 647 Score = 925 bits (2391), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/636 (71%), Positives = 521/636 (81%), Gaps = 1/636 (0%) Query: 11 EPLIYGAMVSIALATIGILVGLTYFKKWGYLWREWLTTVDHKKIGVMYILAALLMLFRGG 70 EP+I A +SI + + I+ GLTYFKKWGY ++ WL+TVDHKKIG+MYI ALLMLFRGG Sbjct: 12 EPMILAAAISIVVGAVVIVAGLTYFKKWGYFYKNWLSTVDHKKIGIMYIAVALLMLFRGG 71 Query: 71 VDAIMMRLQTAAPEMKFLDAQHYNEVFTTHGLIMILFMAMPFIIGLMNVIVPLQIGARDV 130 +DA++MR QTA P+ LDAQHYNE+FTTHGL+MILFMAMPF+IGLMN+++PLQIGARDV Sbjct: 72 IDALLMRAQTAVPDNGLLDAQHYNEIFTTHGLLMILFMAMPFVIGLMNIVIPLQIGARDV 131 Query: 131 AFPRLNAVSFWLFFFGAMLLNISFVIGGSPDAGWSAYFPLASLEFSPTVGNNYYSLALQI 190 AFPRLNAVSFWLF GA LLN+SF+IGGSPDAGW+AYFPLAS +FSPTVGNNYYSLALQ+ Sbjct: 132 AFPRLNAVSFWLFAAGAGLLNLSFIIGGSPDAGWTAYFPLASTDFSPTVGNNYYSLALQL 191 Query: 191 SGIGTLITGVNFIVTILKMRAPGMKLMKMPMFTWSVLITNVIIVFAFPVLTVALALMMFD 250 SGIGTL+TGVNFI TI+KMRAPGMKLMKMPMFTWS+LITNVIIVFAFPVLTVALALMM D Sbjct: 192 SGIGTLMTGVNFITTIIKMRAPGMKLMKMPMFTWSILITNVIIVFAFPVLTVALALMMLD 251 Query: 251 RLFGSQFFTMANGGMDMLWANLFWVWGHPEVYIVILPAFGIYSEIIATFSKKNLYGYTXX 310 R FG++FF M +GGMDMLWANLFWVWGHPEVYIVILPAFGI+SEIIATF++KNLYGY Sbjct: 252 RQFGTKFFAMQDGGMDMLWANLFWVWGHPEVYIVILPAFGIFSEIIATFARKNLYGYKSM 311 Query: 311 XXXXXXXXXXXXXXWAHHFYTMGQGAMVNSFFSITTMAIAVPTGVKIFNWLFTLRKGRIT 370 WAHHFYTMG G MVNS FSITTMAIAVPTGVKIFNWL T+R G+I Sbjct: 312 VMSMVVISLLSFVVWAHHFYTMGHGVMVNSVFSITTMAIAVPTGVKIFNWLLTMRNGKIQ 371 Query: 371 FTTPMLYTLAFIPIFTIGGVTGVMLAMASADYQYHNTMFLVAHFHYVLIPGAVFAVIAGF 430 FTTPMLY L FIPIFTIGGVTGVMLAMASADYQYHNTMFLVAHFHYVLIPG VF V+AG+ Sbjct: 372 FTTPMLYALGFIPIFTIGGVTGVMLAMASADYQYHNTMFLVAHFHYVLIPGTVFGVLAGY 431 Query: 431 HYWFPKVFGFRLNERLGKHSFWWIVISFNVTXXXXXXXXXXXXTRRMYTYSEESGFGPLN 490 HYW+PK+FGFRLNE+LGK +FW+I ISFNVT RRMYTYSE +G+GPLN Sbjct: 432 HYWWPKMFGFRLNEKLGKTAFWFIAISFNVTFFPLFILGLDGYARRMYTYSESTGYGPLN 491 Query: 491 MLSFVGAVGLAIGFVLLVYNIYWSTRYMPRDTTSDPWDGRTLEWATHSPMPVYNFAVVPK 550 MLSFVGA+GLA+GF L+VYNIY+S ++MPR+ +D W+GRTLEWATHSP+P YNFAVVP Sbjct: 492 MLSFVGALGLAVGFALIVYNIYYSWKHMPRNEKADVWEGRTLEWATHSPVPEYNFAVVPT 551 Query: 551 VQTRDAFWSAKQDNMPLFEDKITKIHMPSNTGKPXXXXXXXXXXXXXXXXSMWIPAIVAG 610 V D FW AK++ + KI KIHMP+NTG P +MW+PAI++ Sbjct: 552 VTRLDEFWFAKKEGRDITAGKIEKIHMPNNTGTPFWMSGFFFLAAFFAVFNMWVPAIISM 611 Query: 611 VGVLIMLAAMSFDRDHGYYISVDEVMATEKKLMRGE 646 +GV + SF++DHG YISV+EVMATEK L RG+ Sbjct: 612 LGVFGFMIHRSFEKDHGRYISVEEVMATEKSL-RGD 646 >A3IA75.1 A3IA75_9BACI Cytochrome aa3 quinol oxidase subunit I Length = 649 Score = 865 bits (2236), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/645 (65%), Positives = 495/645 (76%), Gaps = 1/645 (0%) Query: 4 DKFKV-HGEPLIYGAMVSIALATIGILVGLTYFKKWGYLWREWLTTVDHKKIGVMYILAA 62 ++F + H P IY +MV+I L I I+V LTYFKKWGYLWREWLTTVDHK+IG+MY+++A Sbjct: 5 ERFAIPHPSPAIYASMVAIGLTVIAIIVALTYFKKWGYLWREWLTTVDHKRIGIMYLISA 64 Query: 63 LLMLFRGGVDAIMMRLQTAAPEMKFLDAQHYNEVFTTHGLIMILFMAMPFIIGLMNVIVP 122 +LMLFRGG DAIMMR Q A P+ K LDAQHYNE+FTTHG +MI+FMAMPFI+ MN IVP Sbjct: 65 ILMLFRGGADAIMMRAQMAVPDNKLLDAQHYNEIFTTHGTVMIIFMAMPFIMAFMNYIVP 124 Query: 123 LQIGARDVAFPRLNAVSFWLFFFGAMLLNISFVIGGSPDAGWSAYFPLASLEFSPTVGNN 182 LQIGARDVAFPRLNA+SFWLFF GAMLLNISFVIGGSPDAGW+ YFPLAS EFS +VG N Sbjct: 125 LQIGARDVAFPRLNALSFWLFFMGAMLLNISFVIGGSPDAGWTNYFPLASNEFSQSVGVN 184 Query: 183 YYSLALQISGIGTLITGVNFIVTILKMRAPGMKLMKMPMFTWSVLITNVIIVFAFPVLTV 242 YY ALQISG+GTLITG+N IVTILKMRAPGM LMKMPMFTWS L+ NVIIVFAFPVLTV Sbjct: 185 YYLFALQISGLGTLITGINMIVTILKMRAPGMTLMKMPMFTWSSLVANVIIVFAFPVLTV 244 Query: 243 ALALMMFDRLFGSQFFTMANGGMDMLWANLFWVWGHPEVYIVILPAFGIYSEIIATFSKK 302 AL + FDRLF + FFT +NGGMDMLWAN FWVWGHPEVYI+ILPAFG+YSEII+TFS + Sbjct: 245 ALVMGTFDRLFATNFFTTSNGGMDMLWANFFWVWGHPEVYILILPAFGLYSEIISTFSGR 304 Query: 303 NLYGYTXXXXXXXXXXXXXXXXWAHHFYTMGQGAMVNSFFSITTMAIAVPTGVKIFNWLF 362 NLYGY W HHF+TMGQGA+ NS FSITTMAIAVPTGVKIFNWLF Sbjct: 305 NLYGYKSMVGSMVIISFLSFLVWTHHFFTMGQGALTNSIFSITTMAIAVPTGVKIFNWLF 364 Query: 363 TLRKGRITFTTPMLYTLAFIPIFTIGGVTGVMLAMASADYQYHNTMFLVAHFHYVLIPGA 422 TL KG+I FTTPMLY++ FIP FTIGGVTGVML M++ADYQYHNTMFLVAHFH V+IPG Sbjct: 365 TLWKGKIVFTTPMLYSMLFIPTFTIGGVTGVMLGMSAADYQYHNTMFLVAHFHMVIIPGV 424 Query: 423 VFAVIAGFHYWFPKVFGFRLNERLGKHSFWWIVISFNVTXXXXXXXXXXXXTRRMYTYSE 482 VFA++AG HY++PK+FGF LNE++GK + W I IS + RRMYTYS Sbjct: 425 VFAMLAGLHYYWPKMFGFMLNEKIGKVTAWIIAISTLLAFMPMFFSGLDGQARRMYTYSA 484 Query: 483 ESGFGPLNMLSFVGAVGLAIGFVLLVYNIYWSTRYMPRDTTSDPWDGRTLEWATHSPMPV 542 +GFG NM+SFVGA+GL IGF+L+VYN+Y+S RY PR+ SDPWD RTLEWAT SP+P Sbjct: 485 STGFGMWNMVSFVGAIGLTIGFMLIVYNVYYSIRYAPRNIGSDPWDARTLEWATPSPVPY 544 Query: 543 YNFAVVPKVQTRDAFWSAKQDNMPLFEDKITKIHMPSNTGKPXXXXXXXXXXXXXXXXSM 602 YNFA VP V + +A W AK LF +K IHMP+N+G P M Sbjct: 545 YNFAKVPHVISTEALWDAKYRQHDLFPEKYENIHMPNNSGIPFILGCIFFAWGFSFVFGM 604 Query: 603 WIPAIVAGVGVLIMLAAMSFDRDHGYYISVDEVMATEKKLMRGET 647 WIP IV +G+ I +A S ++D G+YI V++V TE KL ++ Sbjct: 605 WIPTIVTTIGIFICMAHRSLEKDPGHYIPVEKVKETESKLRGSQS 649 >B1HMQ0.1 B1HMQ0_LYSSC Cytochrome aa3 quinol oxidase subunit I EC=1.9.3.- Length = 649 Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/645 (65%), Positives = 494/645 (76%), Gaps = 1/645 (0%) Query: 4 DKFKV-HGEPLIYGAMVSIALATIGILVGLTYFKKWGYLWREWLTTVDHKKIGVMYILAA 62 ++F + H P IY +MV+I L I I+VGLTYFKKW YLWREWLTTVDHK+IG+MY+++A Sbjct: 5 ERFAIPHPSPAIYASMVAIGLTVIAIIVGLTYFKKWSYLWREWLTTVDHKRIGIMYLISA 64 Query: 63 LLMLFRGGVDAIMMRLQTAAPEMKFLDAQHYNEVFTTHGLIMILFMAMPFIIGLMNVIVP 122 +LMLFRGG DAIMMR Q A P+ K LDAQHYNE+FTTHG +MI+FMAMPFI+ MN IVP Sbjct: 65 ILMLFRGGADAIMMRAQMAVPDNKLLDAQHYNEIFTTHGTVMIIFMAMPFIMAFMNYIVP 124 Query: 123 LQIGARDVAFPRLNAVSFWLFFFGAMLLNISFVIGGSPDAGWSAYFPLASLEFSPTVGNN 182 LQIGARDVAFPRLNA+SFWLFF GAMLLNISFVIGGSPDAGW+ YFPLA+ EFS +VG N Sbjct: 125 LQIGARDVAFPRLNALSFWLFFMGAMLLNISFVIGGSPDAGWTNYFPLANNEFSQSVGVN 184 Query: 183 YYSLALQISGIGTLITGVNFIVTILKMRAPGMKLMKMPMFTWSVLITNVIIVFAFPVLTV 242 YY ALQISG+GTLITG+N IVTILKMRAPGM LMKMPMFTWS L+ NVIIVFAFPVLTV Sbjct: 185 YYLFALQISGLGTLITGINMIVTILKMRAPGMTLMKMPMFTWSSLVANVIIVFAFPVLTV 244 Query: 243 ALALMMFDRLFGSQFFTMANGGMDMLWANLFWVWGHPEVYIVILPAFGIYSEIIATFSKK 302 AL + FDRLF + FFT +NGGMDMLWAN FWVWGHPEVYI+ILPAFG+YSEII+TFS + Sbjct: 245 ALVMGTFDRLFATNFFTTSNGGMDMLWANFFWVWGHPEVYILILPAFGLYSEIISTFSGR 304 Query: 303 NLYGYTXXXXXXXXXXXXXXXXWAHHFYTMGQGAMVNSFFSITTMAIAVPTGVKIFNWLF 362 NLYGY W HHF+TMGQGA+ NS FSITTMAIAVPTGVKIFNWLF Sbjct: 305 NLYGYKSMVGSMVIISFLSFLVWTHHFFTMGQGALTNSIFSITTMAIAVPTGVKIFNWLF 364 Query: 363 TLRKGRITFTTPMLYTLAFIPIFTIGGVTGVMLAMASADYQYHNTMFLVAHFHYVLIPGA 422 TL KG+I FTTPMLY + FIP FTIGGVTGVML M++ADYQYHNTMFLVAHFH V+IPG Sbjct: 365 TLWKGKIVFTTPMLYAMLFIPTFTIGGVTGVMLGMSAADYQYHNTMFLVAHFHMVIIPGV 424 Query: 423 VFAVIAGFHYWFPKVFGFRLNERLGKHSFWWIVISFNVTXXXXXXXXXXXXTRRMYTYSE 482 VFA++AG HY++PK+FGF LNE++GK + W I +S + RRMYTYS Sbjct: 425 VFAMLAGLHYYWPKMFGFMLNEKIGKVTAWIIALSTLLAFMPMFFSGLDGQARRMYTYSA 484 Query: 483 ESGFGPLNMLSFVGAVGLAIGFVLLVYNIYWSTRYMPRDTTSDPWDGRTLEWATHSPMPV 542 +GFG NM+SFVGA+GL IGF+L+VYN+Y+S RY PR+ SDPWD RTLEWAT SP+P Sbjct: 485 STGFGMWNMVSFVGAIGLTIGFMLIVYNVYYSIRYAPRNIGSDPWDARTLEWATPSPVPY 544 Query: 543 YNFAVVPKVQTRDAFWSAKQDNMPLFEDKITKIHMPSNTGKPXXXXXXXXXXXXXXXXSM 602 YNFA VP V + +A W AK LF +K IHMP+N+G P M Sbjct: 545 YNFAKVPHVISTEALWDAKYRQHDLFPEKYENIHMPNNSGIPFILGCIFFAWGFSFVFGM 604 Query: 603 WIPAIVAGVGVLIMLAAMSFDRDHGYYISVDEVMATEKKLMRGET 647 WIP IV +G+ I +A S ++D G+Y+ V++V TE KL ++ Sbjct: 605 WIPTIVTTIGIFICMAHRSLEKDPGHYVPVEKVKETESKLRGSQS 649 >Q2B4I3.1 Q2B4I3_9BACI Cytochrome aa3 quinol oxidase subunit I Length = 650 Score = 861 bits (2224), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/644 (63%), Positives = 500/644 (77%), Gaps = 2/644 (0%) Query: 4 DKFKV-HGEPLIYGAMVSIALATIGILVGLTYFKKWGYLWREWLTTVDHKKIGVMYILAA 62 ++F + H P+IY +MV+I L I I+ GLTYFKKWGYLWREWLTTVDHK+IG+MY+++A Sbjct: 5 ERFAIPHPSPVIYASMVAIGLTVIAIIAGLTYFKKWGYLWREWLTTVDHKRIGIMYLISA 64 Query: 63 LLMLFRGGVDAIMMRLQTAAPEMKFLDAQHYNEVFTTHGLIMILFMAMPFIIGLMNVIVP 122 LLMLFRGG DAIMMR Q A P+ LDAQHYNE+FTTHG +MILFMAMPFI+ MN +VP Sbjct: 65 LLMLFRGGADAIMMRAQLAVPDNTLLDAQHYNEIFTTHGTVMILFMAMPFIMAFMNFVVP 124 Query: 123 LQIGARDVAFPRLNAVSFWLFFFGAMLLNISFVIGGSPDAGWSAYFPLASLEFSPTVGNN 182 LQIGARDVAFP+LNA+SFWLFF GAMLLNISFVIGGSPDAGW++YFPLA EFS +VG N Sbjct: 125 LQIGARDVAFPKLNALSFWLFFMGAMLLNISFVIGGSPDAGWTSYFPLAGTEFSESVGTN 184 Query: 183 YYSLALQISGIGTLITGVNFIVTILKMRAPGMKLMKMPMFTWSVLITNVIIVFAFPVLTV 242 YY +LQI+G+GTL+TG+N + TIL+MRAPGM LMKMPMFTWS L+ ++IIVFAFPVLTV Sbjct: 185 YYMFSLQIAGLGTLMTGINMVTTILRMRAPGMTLMKMPMFTWSSLVASIIIVFAFPVLTV 244 Query: 243 ALALMMFDRLFGSQFFTMANGGMDMLWANLFWVWGHPEVYIVILPAFGIYSEIIATFSKK 302 ALA+ DRLF + FFT +NGGMDMLWAN FWVWGHPEVYI+ILPAFGIYSEII+TF+++ Sbjct: 245 ALAMGSLDRLFATNFFTTSNGGMDMLWANFFWVWGHPEVYILILPAFGIYSEIISTFARR 304 Query: 303 NLYGYTXXXXXXXXXXXXXXXXWAHHFYTMGQGAMVNSFFSITTMAIAVPTGVKIFNWLF 362 NLYGY W HHF+TMGQGA+ NS FSITTMAIAVPTGVKIFNWL Sbjct: 305 NLYGYKSMVGSMVIISLLSFLVWTHHFFTMGQGALTNSIFSITTMAIAVPTGVKIFNWLL 364 Query: 363 TLRKGRITFTTPMLYTLAFIPIFTIGGVTGVMLAMASADYQYHNTMFLVAHFHYVLIPGA 422 TL KG+IT TTPMLY+L FIPIFTIGGVTGVML M++ADYQYHNTMFLVAHFH V+IPG Sbjct: 365 TLWKGKITITTPMLYSLLFIPIFTIGGVTGVMLGMSAADYQYHNTMFLVAHFHMVIIPGV 424 Query: 423 VFAVIAGFHYWFPKVFGFRLNERLGKHSFWWIVISFNVTXXXXXXXXXXXXTRRMYTYSE 482 VFA++AGFH+++PK+FG+ LNE++GK + W I +S + RR YTYSE Sbjct: 425 VFAMLAGFHFYWPKMFGYILNEKIGKLTAWIISMSTLLAFMPMFFSGLDGQARRAYTYSE 484 Query: 483 ESGFGPLNMLSFVGAVGLAIGFVLLVYNIYWSTRYMPRDTTSDPWDGRTLEWATHSPMPV 542 +G+G NMLSF+GA GLA+GF L+VYN+Y+STRY RD SDPWD R+LEWAT++P+PV Sbjct: 485 ATGYGIWNMLSFIGAAGLAVGFALIVYNVYYSTRYASRDIGSDPWDARSLEWATNTPVPV 544 Query: 543 YNFAVVPKVQTRDAFWSAKQDNMPLFEDKITKIHMPSNTGKPXXXXXXXXXXXXXXXXSM 602 YNFAV+P+V+T + W AK+ LF K +IHMP+N+G P +M Sbjct: 545 YNFAVLPEVKTSEGLWDAKKHGHNLFPGKYEEIHMPNNSGLPFILSCIFFAWGFSFIFAM 604 Query: 603 WIPAIVAGVGVLIMLAAMSFDRDHGYYISVDEVMATEKKL-MRG 645 WIP I+ +G+ +A SF +D+GY+I V E+ TE + MRG Sbjct: 605 WIPVIITTIGIFACMAVWSFQKDYGYHIPVKEIEKTENETNMRG 648 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.142 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,643,343,676 Number of extensions: 143904795 Number of successful extensions: 686791 Number of sequences better than 1.0e-05: 89703 Number of HSP's gapped: 530412 Number of HSP's successfully gapped: 89956 Length of query: 648 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 506 Effective length of database: 1,722,912,073 Effective search space: 871793508938 Effective search space used: 871793508938 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 135 (56.6 bits)