BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0391.0037.p (339 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6D3.1 B3K6D3_9BACI Quinol oxidase AA3, subunit II 390 e-107 A3IF61.1 A3IF61_9BACI Cytochrome aa3 quinol oxidase subunit II 329 3e-88 B1HVF0.1 B1HVF0_LYSSC Quinol oxidase subunit 2 EC=1.10.3.- 328 6e-88 A3IA74.1 A3IA74_9BACI Cytochrome aa3 quinol oxidase subunit II 274 7e-72 B1HNA7.1 B1HNA7_LYSSC Quinol oxidase subunit 2 EC=1.10.3.- 273 1e-71 >B3K6D3.1 B3K6D3_9BACI Quinol oxidase AA3, subunit II Length = 334 Score = 390 bits (1002), Expect = e-107, Method: Compositional matrix adjust. Identities = 209/341 (61%), Positives = 251/341 (73%), Gaps = 10/341 (2%) Query: 1 MKKKGPXXXXXXXXXXXXXXXXXXTVLNPKGPSARTLSDTIILSILVMLGVLAVVYILYI 60 M K+GP TVL+PKGP+ARTLSDTII SIL+M+G+LAVVY LYI Sbjct: 1 MNKRGPLFAMFLCFTLLLSGCSSLTVLDPKGPAARTLSDTIIFSILMMVGILAVVYALYI 60 Query: 61 FVLVKYRAKKSNEGYIPEHEEGNKVLETXXXXXXXXXXAFLSVVTVKTTNAVENQAVEYK 120 ++L KYRAKKSNEGY P HEEGNK LE A LSVVTVKTT AVEN Y+ Sbjct: 61 YMLTKYRAKKSNEGYEPPHEEGNKWLEILWTAIPILIVAVLSVVTVKTTVAVENVPEGYE 120 Query: 121 DQTPLVIYAASSNWKWHFSYPEEGIETVNYVNMPVHRAVEFRMYSFGSITSLWIPQLAGQ 180 +Q PLVIYA+SSNWKWHFSYPEEGIETVNYVN+P +R +EFR+YSFG ITS WIPQL GQ Sbjct: 121 NQKPLVIYASSSNWKWHFSYPEEGIETVNYVNIPTNRPIEFRLYSFGPITSFWIPQLHGQ 180 Query: 181 KYAMSDMLTTLHLSADTEGSYMGRNANFSGKGFAHMEFEALVMSSKDYDDWVKEVKETAP 240 KYAMSDM+T L++ AD GS MGRNANF+G+GFAHMEFEAL M+S +YD+WVK+VK+TAP Sbjct: 181 KYAMSDMITKLNMVADVPGSMMGRNANFNGEGFAHMEFEALAMTSAEYDEWVKDVKDTAP 240 Query: 241 KLTEKEFKGLLATDYLGRKTYSSTHLEFSPPPGEHSEHMSGGGKEMDMDNGSMEHQDNKE 300 +L E EFK LL T ++GR T+S+THLEFS PP E +H GG NG+ EHQD+K+ Sbjct: 241 ELKEDEFKKLLDTAHVGRMTFSNTHLEFSQPPSE--DHHHGGDV-----NGNEEHQDHKD 293 Query: 301 IHPSPEPSSETEFDSKPNPEVEQPLPSSPVDE---HTHDSN 338 +HP P + ETEFDS+ N + +PLP+ P +E H HD + Sbjct: 294 VHPDPATTEETEFDSETNVDPNEPLPNFPAEESPNHQHDGH 334 >A3IF61.1 A3IF61_9BACI Cytochrome aa3 quinol oxidase subunit II Length = 301 Score = 329 bits (843), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 166/278 (59%), Positives = 208/278 (74%), Gaps = 4/278 (1%) Query: 25 TVLNPKGPSARTLSDTIILSILVMLGVLAVVYILYIFVLVKYRAKKSNEGYIPEHEEGNK 84 TV NPKGP+A TLS+TIILSI+ M +L VVY+L F+L KYRA K++ Y P HEEG+ Sbjct: 25 TVFNPKGPNAETLSNTIILSIITMAFILLVVYVLLAFMLTKYRASKASADYEPPHEEGSH 84 Query: 85 VLETXXXXXXXXXXAFLSVVTVKTTNAVENQAVEYKDQTPLVIYAASSNWKWHFSYPEEG 144 +LE AFL+VVTV+TT+ VE Q Y D+ PLVIYA+SSNWKWHFSYPEEG Sbjct: 85 LLEITWTVIPIIIVAFLAVVTVRTTSTVEAQPAGYDDKEPLVIYASSSNWKWHFSYPEEG 144 Query: 145 IETVNYVNMPVHRAVEFRMYSFGSITSLWIPQLAGQKYAMSDMLTTLHLSADTEGSYMGR 204 +ETVNYVN+PV R +EF++YSFG ITS WIPQLAGQKYAMSDMLTT+HL+AD GS+MGR Sbjct: 145 VETVNYVNLPVDRPIEFKLYSFGPITSFWIPQLAGQKYAMSDMLTTIHLAADEVGSFMGR 204 Query: 205 NANFSGKGFAHMEFEALVMSSKDYDDWVKEVKETAPKLTEKEFKGLLATDYLGRKTYSST 264 N+NF+G+GFA MEFEA M+ +D+D WV +VK LTE++F LL +++GR+++SST Sbjct: 205 NSNFNGRGFAEMEFEAQSMTQEDFDKWVADVKAKEKPLTEEKFDELLKAEHVGRQSFSST 264 Query: 265 HLEFSPPPGEHSEHMSGGGKEMDMDNGSMEHQDNKEIH 302 HLEFSP P EH ++M G DMD+G M +D H Sbjct: 265 HLEFSPAPMEHGKNMKMG----DMDHGDMSEEDMNNEH 298 >B1HVF0.1 B1HVF0_LYSSC Quinol oxidase subunit 2 EC=1.10.3.- Length = 301 Score = 328 bits (840), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 166/278 (59%), Positives = 207/278 (74%), Gaps = 4/278 (1%) Query: 25 TVLNPKGPSARTLSDTIILSILVMLGVLAVVYILYIFVLVKYRAKKSNEGYIPEHEEGNK 84 TV NPKGP+A TLS+TIILSI+ M +L VVY+L F+L KYRA K+ Y P HEEG+ Sbjct: 25 TVFNPKGPNAETLSNTIILSIITMAFILLVVYVLLAFMLTKYRASKTAADYEPPHEEGSH 84 Query: 85 VLETXXXXXXXXXXAFLSVVTVKTTNAVENQAVEYKDQTPLVIYAASSNWKWHFSYPEEG 144 +LE AFL+VVTV+TT+ VE Q Y D+ PLVIYA+SSNWKWHFSYPEEG Sbjct: 85 LLEITWTVIPIIIVAFLAVVTVRTTSTVEAQPAGYDDKEPLVIYASSSNWKWHFSYPEEG 144 Query: 145 IETVNYVNMPVHRAVEFRMYSFGSITSLWIPQLAGQKYAMSDMLTTLHLSADTEGSYMGR 204 +ETVNYVN+PV R +EF++YSFG ITS WIPQLAGQKYAMSDMLTT+HL+AD GS+MGR Sbjct: 145 VETVNYVNIPVDRPIEFKLYSFGPITSFWIPQLAGQKYAMSDMLTTIHLAADEVGSFMGR 204 Query: 205 NANFSGKGFAHMEFEALVMSSKDYDDWVKEVKETAPKLTEKEFKGLLATDYLGRKTYSST 264 N+NF+G+GFA MEFEA M+ +D+D WV +VK LTE++F LL +++GR+++SST Sbjct: 205 NSNFNGRGFAEMEFEAQSMTQEDFDKWVADVKAKEKPLTEEKFDELLKAEHVGRQSFSST 264 Query: 265 HLEFSPPPGEHSEHMSGGGKEMDMDNGSMEHQDNKEIH 302 HLEFSP P EH ++M G DMD+G M +D H Sbjct: 265 HLEFSPAPMEHGKNMKMG----DMDHGDMSEEDMNNEH 298 >A3IA74.1 A3IA74_9BACI Cytochrome aa3 quinol oxidase subunit II Length = 292 Score = 274 bits (701), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 129/257 (50%), Positives = 181/257 (70%), Gaps = 1/257 (0%) Query: 26 VLNPKGPSARTLSDTIILSILVMLGVLAVVYILYIFVLVKYRAKKSNEGYIPEHEEGNKV 85 VL+PKGP A+ + I+LSI +M ++ VV+++ ++L+K+RA K + Y P H +G+ + Sbjct: 26 VLDPKGPQAQVQAKDIMLSIGIMSFIVLVVFVILAYMLMKFRASKQSPDYKPPHIKGSTM 85 Query: 86 LETXXXXXXXXXXAFLSVVTVKTTNAVENQAVEYKDQTPLVIYAASSNWKWHFSYPEEGI 145 +E A++S+++V++ VE+ +YKD+ PLVIYA++SNWKWHFSYPEE I Sbjct: 86 VEVICVGIPVLIVAYMSIISVQSNYKVESTPEKYKDEKPLVIYASTSNWKWHFSYPEEDI 145 Query: 146 ETVNYVNMPVHRAVEFRMYSFGSITSLWIPQLAGQKYAMSDMLTTLHLSADTEGSYMGRN 205 ETVNYV +P R +EF++YS+G ITS WIPQL GQKYAM+DM+ TLHL+AD G +MGRN Sbjct: 146 ETVNYVYIPAERPIEFKLYSYGPITSFWIPQLGGQKYAMADMVNTLHLAADMPGEFMGRN 205 Query: 206 ANFSGKGFAHMEFEALVMSSKDYDDWVKEVKETAPKLTEKEFKGLLATDYLGRKTYSSTH 265 ANF+GKGFA F ++ ++D WVKEVKETA LTE++F LL ++G+ T++ TH Sbjct: 206 ANFNGKGFAENTFNVTAVTHDEFDAWVKEVKETADLLTEEKFNTLLEPGHVGQSTFNGTH 265 Query: 266 LEFSPPP-GEHSEHMSG 281 L F P P GEH H G Sbjct: 266 LTFLPAPEGEHGGHQHG 282 >B1HNA7.1 B1HNA7_LYSSC Quinol oxidase subunit 2 EC=1.10.3.- Length = 276 Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 128/257 (49%), Positives = 182/257 (70%), Gaps = 1/257 (0%) Query: 26 VLNPKGPSARTLSDTIILSILVMLGVLAVVYILYIFVLVKYRAKKSNEGYIPEHEEGNKV 85 VL+PKGP A+ + I+LSI +M ++ VV+++ ++L+K+RA K + Y P H +G+ + Sbjct: 10 VLDPKGPQAQVQAKDIMLSIGIMSFIVLVVFVILAYMLMKFRASKQSPDYKPPHIKGSTM 69 Query: 86 LETXXXXXXXXXXAFLSVVTVKTTNAVENQAVEYKDQTPLVIYAASSNWKWHFSYPEEGI 145 +E A++S+++V++ VE+ +YKD+ PLVIYAA+SNWKWHFSYPEE I Sbjct: 70 VEIICVGIPVLIVAYMSIISVQSNYKVESTPEKYKDEKPLVIYAATSNWKWHFSYPEEDI 129 Query: 146 ETVNYVNMPVHRAVEFRMYSFGSITSLWIPQLAGQKYAMSDMLTTLHLSADTEGSYMGRN 205 ETVNY+ +P R +EF++YS+G ITS WIPQL GQKYAM+DM+ TLHL+AD G +MGRN Sbjct: 130 ETVNYLYIPAERPIEFKLYSYGPITSFWIPQLGGQKYAMADMVNTLHLAADMPGEFMGRN 189 Query: 206 ANFSGKGFAHMEFEALVMSSKDYDDWVKEVKETAPKLTEKEFKGLLATDYLGRKTYSSTH 265 ANF+GKGFA F ++ ++D+WVKEVKETA LTE++F LL ++G+ T++ TH Sbjct: 190 ANFNGKGFAENTFNVTAVTHDEFDEWVKEVKETADLLTEEKFNTLLQPGHVGQATFNGTH 249 Query: 266 LEFSPPP-GEHSEHMSG 281 L F P P GE+ H G Sbjct: 250 LTFLPAPEGENGGHQHG 266 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.311 0.129 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,956,108,758 Number of extensions: 81966776 Number of successful extensions: 226659 Number of sequences better than 1.0e-05: 896 Number of HSP's gapped: 225899 Number of HSP's successfully gapped: 896 Length of query: 339 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 203 Effective length of database: 1,779,438,163 Effective search space: 361225947089 Effective search space used: 361225947089 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 131 (55.1 bits)