BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0391.0035.p (231 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A8S1X9.1 A8S1X9_9CLOT Putative uncharacterized protein 128 3e-28 A6LQ18.1 A6LQ18_CLOB8 Transcriptional regulator, TetR family 122 3e-26 Q97D02.1 Q97D02_CLOAB Transcriptional regulator, AcrR family 114 6e-24 B8FMX9.1 B8FMX9_DESAA Transcriptional regulator, TetR family 104 8e-21 A8ZSR4.1 A8ZSR4_DESOH Transcriptional regulator, TetR family 103 2e-20 >A8S1X9.1 A8S1X9_9CLOT Putative uncharacterized protein Length = 207 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 70/194 (36%), Positives = 119/194 (61%), Gaps = 7/194 (3%) Query: 30 MEDK--IRTPRQERSIRTREAIVQAAMKQFSDKGFHQTNTKQIAAAAGVSTGSFYSYFVD 87 ME+K +R P+Q+RSI+ +E I++ + F + G++ T T +IA AG+S GS YSYF D Sbjct: 1 MENKKSVRRPQQKRSIQMKETILEVSKSLFCENGYYNTTTNEIAKTAGISIGSLYSYFPD 60 Query: 88 KRAVFIEVLKN----YGTDLLARIDASMSEINFLTIDRSELIMHLVDTLLISHEAFIGYH 143 K A+ E+L+ + +++ ++ S +L + + + LV+TL+ HEA + Sbjct: 61 KDAILTELLERSNQYHFSNVFEKLRPESSAQLYLK-EPKKWLYDLVNTLIQLHEAEKDFL 119 Query: 144 RELTIMYHSDEEIKQLMDAQYEAGRIRTLEYLQMGQDELKTEDMEAASVIVFETVSAIVD 203 REL ++Y + E+K + D+Q E ++ T EY++ Q EL ED+EA SV++ + ++A+VD Sbjct: 120 RELNVLYFAKPEVKAIKDSQSEKVQMATYEYIRRYQSELPYEDLEAVSVVIVDFITALVD 179 Query: 204 VISFSQQRIATERL 217 I F + R+ ERL Sbjct: 180 RIIFKEARLEKERL 193 >A6LQ18.1 A6LQ18_CLOB8 Transcriptional regulator, TetR family Length = 204 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 71/203 (34%), Positives = 119/203 (58%) Query: 29 DMEDKIRTPRQERSIRTREAIVQAAMKQFSDKGFHQTNTKQIAAAAGVSTGSFYSYFVDK 88 ++ IR P+Q+RSI T E I++ A K F +KG+++T T +IA AGVS GSFYSY+ DK Sbjct: 2 ELNKAIRIPKQKRSIITNEKIIKTAFKLFCEKGYYKTTTNEIAKIAGVSIGSFYSYYKDK 61 Query: 89 RAVFIEVLKNYGTDLLARIDASMSEINFLTIDRSELIMHLVDTLLISHEAFIGYHRELTI 148 +F+++L +Y L + S IN D+ + + L++ +L HE+ ++E+ I Sbjct: 62 DTIFMKILDDYNKLFLEINNESELAINLYKSDKKKWLQKLINKILNIHESSKQLNKEIKI 121 Query: 149 MYHSDEEIKQLMDAQYEAGRIRTLEYLQMGQDELKTEDMEAASVIVFETVSAIVDVISFS 208 + +S EI ++ +E LEYL M ++++K D+ AS+I + +S+ VD I+F Sbjct: 122 LSYSMPEIAEINKKHHEIIIKVILEYLHMCKNDIKISDLYVASIISYNIISSTVDHIAFE 181 Query: 209 QQRIATERLKSELVHMIVSYLYK 231 + I+ ERL V + +L+K Sbjct: 182 ETIISRERLIEATVEAVYKFLFK 204 >Q97D02.1 Q97D02_CLOAB Transcriptional regulator, AcrR family Length = 196 Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 71/198 (35%), Positives = 117/198 (59%), Gaps = 6/198 (3%) Query: 34 IRTPRQERSIRTREAIVQAAMKQFSDKGFHQTNTKQIAAAAGVSTGSFYSYFVDKRAVFI 93 +R P+Q R +T+ I+ AA + FS+KG+ T++ +IA+ A V+ GSFYSYF DK+ +FI Sbjct: 1 MRNPKQTRGKQTKSKIINAAFELFSEKGYTGTSSNEIASRAEVAIGSFYSYFKDKKQLFI 60 Query: 94 EVLKNYGTDLLARIDASMSEINFLTIDRSELIMHLVDTLLISHEAFIGYHRELTIMYHSD 153 EVLK+Y D +++I S S IN + + + + L +HE +HRE+ IM +D Sbjct: 61 EVLKDY-YDNISKI--SFSNINGTISNLDDFLYESIKIALKAHEYHPEFHREVNIMELAD 117 Query: 154 EEIKQLMDAQYEAGRIRTLEYL-QMGQDELKTEDMEAASVIVFETVSAIVDVISFS-QQR 211 ++IK+L+ YE + + + L + ++E K + A +++ T+ V VI+FS Sbjct: 118 DDIKKLI-VGYEKVKFDSFKKLVEPYKNEFKNLNFNEALFLIYTTIENTVHVITFSTDTN 176 Query: 212 IATERLKSELVHMIVSYL 229 + E L EL+ MI SY+ Sbjct: 177 LNKETLIKELISMIKSYI 194 >B8FMX9.1 B8FMX9_DESAA Transcriptional regulator, TetR family Length = 201 Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 113/205 (55%), Gaps = 17/205 (8%) Query: 33 KIRTPRQERSIRTREAIVQAAMKQFSDKGFHQTNTKQIAAAAGVSTGSFYSYFVDKRAVF 92 K+R P+Q+RSI+TR AI+ AA F++KG H TN+K+I AGVS GSFY+YF +K+ + Sbjct: 3 KVRQPQQDRSIKTRAAIMNAAFALFAEKGIHGTNSKEIVKKAGVSIGSFYAYFKNKKTLL 62 Query: 93 IEVLKNY----GTDLLARIDASMSEINFLTIDRSELIMHLVDTLLISHEAFIGYHRELTI 148 +E+L++Y T + +++S E + + L+ H+ IS E +HR+ Sbjct: 63 LEMLEDYLDRHYTAIWGEVNSSPPE-KWGEEEVRSLVRHVFRAYDISPE----FHRQTHA 117 Query: 149 MYHSDEEIKQLMDAQYEAGRIRTLEYLQ----MGQDELKTEDMEAASVIVFETVSAIVDV 204 + +SD +I ++ YE R R + L+ +D L +D A+++I+ +V Sbjct: 118 LRYSDPDINEV----YERDRERQVAQLESLIITFKDLLHIKDARASALIIHNSVENAAHT 173 Query: 205 ISFSQQRIATERLKSELVHMIVSYL 229 F R+ ERL + L +MI ++ Sbjct: 174 AKFIGHRMEEERLINALTNMIYQFI 198 >A8ZSR4.1 A8ZSR4_DESOH Transcriptional regulator, TetR family Length = 213 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/213 (31%), Positives = 119/213 (55%), Gaps = 13/213 (6%) Query: 27 MSDMEDKIRTPRQERSIRTREAIVQAAMKQFSDKGFHQTNTKQIAAAAGVSTGSFYSYFV 86 M+ ++K R P Q+RSI T+E I+ AA + F++KG+ +TNT ++A AG++TGSFY YF Sbjct: 1 MTISKNKARIPVQKRSIETKEKILNAAWELFAEKGYFKTNTNELAERAGIATGSFYGYFN 60 Query: 87 DKRAVFIEVL--------KNYGTDLLARIDASMSEINFLTIDRS-ELIMHLVDTLLISHE 137 +K+ V IE++ K ++ +I +++E +D +L+ ++ +L SH Sbjct: 61 NKKEVGIELMMRFYKEVSKKALSNFYIQIGDNVAE----NLDTGRKLVRFIIKSLKESHA 116 Query: 138 AFIGYHRELTIMYHSDEEIKQLMDAQYEAGRIRTLEYLQMGQDELKTEDMEAASVIVFET 197 H+E T + DE+++ + + + + LQ + ++ +D+EAA+V++F T Sbjct: 117 INPLLHKETTALILLDEDVRNISSEEDKKIIAFLITLLQQHKQLIRVDDIEAAAVLLFRT 176 Query: 198 VSAIVDVISFSQQRIATERLKSELVHMIVSYLY 230 I+ I + I +RL EL MI SYL+ Sbjct: 177 SDEIIHRIMIHKDAIDEDRLLKELEDMICSYLF 209 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.131 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,122,012,688 Number of extensions: 40171768 Number of successful extensions: 145602 Number of sequences better than 1.0e-05: 266 Number of HSP's gapped: 145875 Number of HSP's successfully gapped: 266 Length of query: 231 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 100 Effective length of database: 1,826,543,238 Effective search space: 182654323800 Effective search space used: 182654323800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)