BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0391.0034.p (329 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q97TJ2.1 Q97TJ2_CLOAB Permease MDR type 123 2e-26 C2PX62.1 C2PX62_BACCE Permease MDR type 106 2e-21 C3AMK1.1 C3AMK1_BACMY Permease MDR type 105 4e-21 C3B4Q3.1 C3B4Q3_BACMY Permease MDR type 103 2e-20 C3BLI2.1 C3BLI2_9BACI Permease MDR type 102 5e-20 >Q97TJ2.1 Q97TJ2_CLOAB Permease MDR type Length = 545 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/306 (28%), Positives = 140/306 (45%), Gaps = 9/306 (2%) Query: 10 QWKGKEPMLPLSLMRIRTFNSASLTLLIVGAALMNLSLLTSFFLTRMMGMTELKAGLVLS 69 + K EPML LSL + F + S++L ++G +M S SFFLT++ G+ EL AGL++S Sbjct: 245 ELKVNEPMLSLSLFKSLQFTNGSISLFLLGLGMMCGSYFLSFFLTQIKGLNELSAGLIIS 304 Query: 70 MXXXXXXXXXXXXXPLSAKYGSHLFAAAGIVVTGGAMYSMSGLHADSXXXXXXXXXXXXX 129 L+ K G +A GI + + Y S L +S Sbjct: 305 TMSLSSMFFSIVAAILTKKVGKRFISAFGIFLLCFSCYLNSSLTQNSSNIDVILRLIITG 364 Query: 130 XXXXXTMAPVMSSAVRNVPEDKVGISSGVTNMAKSLGSVIGVAIIVTVLQHNMDSELGKA 189 +MA ++SS + NVP +K+GI+SG+ NM ++LG+V+GVA+ +T+ NM ++ A Sbjct: 365 AGTGLSMATLLSSTIANVPINKIGIASGIDNMTRTLGTVLGVALFLTIFTSNMAIQITDA 424 Query: 190 GNHLSEAIQADVKLQPIVKTVLAETAASISKEGAAPMGGTSGXXXXXXXXXXXXXXXXXX 249 + + I +D K + ++ +S E + Sbjct: 425 KKAVIQTIHSDTVFDDKTKLKMI-SSIKVSSEQTVSL-------LKILNTIDKKETSVLA 476 Query: 250 XXPAEQK-AFAADSANQLREAKLLLSQAGNGMQQAAVEGFRRTFVFAGLLMIPGILFALL 308 P+ K A Q +E K ++ + V+ F TF +++ PG+LFAL Sbjct: 477 SSPSMYKDKIKAGFETQKKEIKKVVPTIQHVFLSYTVKAFSFTFEAGAIILFPGVLFALF 536 Query: 309 SDKRRK 314 SDKRR+ Sbjct: 537 SDKRRE 542 >C2PX62.1 C2PX62_BACCE Permease MDR type Length = 519 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 102/196 (52%) Query: 3 LLLFILTQWKGKEPMLPLSLMRIRTFNSASLTLLIVGAALMNLSLLTSFFLTRMMGMTEL 62 +LF + K PMLPL L + F+ ++L+L VG LMN + +F+ ++ GM+EL Sbjct: 238 FILFFSIEKKSNNPMLPLKLFSYKEFSISNLSLFFVGMGLMNFLFILAFYFVQVEGMSEL 297 Query: 63 KAGLVLSMXXXXXXXXXXXXXPLSAKYGSHLFAAAGIVVTGGAMYSMSGLHADSXXXXXX 122 ++GL++S P++AK GS L + G++ A Y S + ++ Sbjct: 298 QSGLIISTLAIVSMVVTGVVTPIAAKQGSVLIGSIGMIAFIIASYLFSHIDSNFTTWDYI 357 Query: 123 XXXXXXXXXXXXTMAPVMSSAVRNVPEDKVGISSGVTNMAKSLGSVIGVAIIVTVLQHNM 182 T+AP ++AV +VP +K G++S V N+++++GS++GVAI+V L H + Sbjct: 358 WRLVIVGIGTGCTLAPYTTTAVLSVPTEKTGVASSVCNISRTVGSIVGVAILVMFLNHQL 417 Query: 183 DSELGKAGNHLSEAIQ 198 E K + I+ Sbjct: 418 LVEKEKVNKEVLTVIE 433 >C3AMK1.1 C3AMK1_BACMY Permease MDR type Length = 281 Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 111/212 (52%), Gaps = 4/212 (1%) Query: 5 LFILTQWKGKEPMLPLSLMRIRTFNSASLTLLIVGAALMNLSLLTSFFLTRMMGMTELKA 64 +FI + K K PMLPL L + F+ ++L+L VG LMN + +F+L ++ GM+EL++ Sbjct: 1 MFIFIEKKSKNPMLPLYLFSYKEFSFSNLSLFFVGMGLMNFLFVFAFYLVQVDGMSELQS 60 Query: 65 GLVLSMXXXXXXXXXXXXXPLSAKYGSHLFAAAGIVVTGGAMYSMSGLHADSXXXXXXXX 124 G+++S P++AK+GS + GI+ A Y + + Sbjct: 61 GMIISTLAIVSMVVTAIMTPIAAKHGSSVIGIIGIIAFIIASYLFGHMESGFSNWDYIWR 120 Query: 125 XXXXXXXXXXTMAPVMSSAVRNVPEDKVGISSGVTNMAKSLGSVIGVAIIVTVLQHNMDS 184 T+AP ++AV +VP +K GI+S ++N+++++GS++GVAI+V +L H + Sbjct: 121 LVVVGFGAGCTLAPFTTTAVLSVPIEKSGIASSISNISRTVGSIVGVAILVVILNHQLSI 180 Query: 185 ELGKAGNHLSEAI----QADVKLQPIVKTVLA 212 E + + I Q D + Q I+ + A Sbjct: 181 EKEEIKQQVKAMIQKGDQTDFEKQKILHVIKA 212 >C3B4Q3.1 C3B4Q3_BACMY Permease MDR type Length = 358 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 101/189 (53%) Query: 12 KGKEPMLPLSLMRIRTFNSASLTLLIVGAALMNLSLLTSFFLTRMMGMTELKAGLVLSMX 71 K K PMLPL L + F+ ++L+L VG LMN + +F+L ++ GM+EL++G+++S Sbjct: 85 KSKNPMLPLYLFSYKEFSFSNLSLFFVGMGLMNFLFVFAFYLVQVDGMSELQSGMIISTL 144 Query: 72 XXXXXXXXXXXXPLSAKYGSHLFAAAGIVVTGGAMYSMSGLHADSXXXXXXXXXXXXXXX 131 P++AK+GS + GI+ A Y + + Sbjct: 145 AIVSMVVTAIMTPIAAKHGSSVIGIIGIIAFIIASYLFGHMESGFSNWDYIWRLVVVGFG 204 Query: 132 XXXTMAPVMSSAVRNVPEDKVGISSGVTNMAKSLGSVIGVAIIVTVLQHNMDSELGKAGN 191 T+AP ++AV +VP +K GI+S ++N+++++GS++GVAI+V +L H + E + Sbjct: 205 AGCTLAPFTTTAVLSVPIEKSGIASSISNISRTVGSIVGVAILVVILNHQLSIEKEEIKQ 264 Query: 192 HLSEAIQAD 200 + IQ D Sbjct: 265 QVKAMIQKD 273 >C3BLI2.1 C3BLI2_9BACI Permease MDR type Length = 294 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 107/203 (52%), Gaps = 4/203 (1%) Query: 12 KGKEPMLPLSLMRIRTFNSASLTLLIVGAALMNLSLLTSFFLTRMMGMTELKAGLVLSMX 71 K K PMLPL L + F+ ++L+L VG LMN + +F+L ++ GM+EL++G+++S Sbjct: 68 KSKNPMLPLYLFSYKEFSFSNLSLFFVGMGLMNFLFIFAFYLVQVDGMSELQSGMIISTL 127 Query: 72 XXXXXXXXXXXXPLSAKYGSHLFAAAGIVVTGGAMYSMSGLHADSXXXXXXXXXXXXXXX 131 P++AK+GS + GI+ A Y + + Sbjct: 128 AIVSMVVTAIMTPIAAKHGSSVIGIIGIIAFIIASYLFGHMESGFSNWDYIWRLVVVGFG 187 Query: 132 XXXTMAPVMSSAVRNVPEDKVGISSGVTNMAKSLGSVIGVAIIVTVLQHNMDSELGKAGN 191 T+AP+ ++AV +VP +K GI+S ++N+++++GS++GVAI+V +L H + E + Sbjct: 188 AGCTLAPLTTTAVLSVPTEKSGIASSISNISRTVGSIVGVAILVVILNHQLSIEKEEIKQ 247 Query: 192 HLSEAI----QADVKLQPIVKTV 210 + I Q D + Q I+ + Sbjct: 248 QVKAMIQKGDQTDFEKQKILHVI 270 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.132 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,288,818,347 Number of extensions: 37907766 Number of successful extensions: 120066 Number of sequences better than 1.0e-05: 987 Number of HSP's gapped: 121135 Number of HSP's successfully gapped: 987 Length of query: 329 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 193 Effective length of database: 1,779,438,163 Effective search space: 343431565459 Effective search space used: 343431565459 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)