BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0391.0033.p
         (126 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6CJR8.1 A6CJR8_9BACI Transcriptional regulator (GntR family) pr...   139   9e-32
A4J9J2.1 A4J9J2_DESRM Transcriptional regulator, GntR family          136   7e-31
B7GHY4.1 B7GHY4_ANOFW Transcriptional regulator (GntR family)         127   4e-28
C5D2C2.1 C5D2C2_9BACI Transcriptional regulator, GntR family          125   2e-27
B9MMM1.1 B9MMM1_ANATD Transcriptional regulator, GntR family          122   8e-27

>A6CJR8.1 A6CJR8_9BACI Transcriptional regulator (GntR family) protein
          Length = 132

 Score =  139 bits (350), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 71/125 (56%), Positives = 90/125 (72%), Gaps = 1/125 (0%)

Query: 1   MFELDVRSRKPIYEQLNDKVKELIMHGILRADEQLPSVRTLSSQLTVNPNTIQKAYRELE 60
           MFELD+RSRKPIYEQL +K+KELI++ IL+ADEQLPSVRTL+ +LT+NPNTIQKAYRELE
Sbjct: 1   MFELDLRSRKPIYEQLVEKLKELIINEILKADEQLPSVRTLAGELTINPNTIQKAYRELE 60

Query: 61  REGYIYSLQGKGSFVAPLQQGQNESKKXXXXXXXXXXXXXXVYLGFTENEIGALYRQVLE 120
            +GYIYS++G+GSFV P    QN  K               +YLG +  EI  L +++ E
Sbjct: 61  NQGYIYSVKGRGSFVNPAAHTQNSEKMKNVISELEKLIAEGMYLGISSAEIIELIKKI-E 119

Query: 121 QREKG 125
           Q+  G
Sbjct: 120 QKVGG 124


>A4J9J2.1 A4J9J2_DESRM Transcriptional regulator, GntR family
          Length = 126

 Score =  136 bits (342), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 70/126 (55%), Positives = 85/126 (67%)

Query: 1   MFELDVRSRKPIYEQLNDKVKELIMHGILRADEQLPSVRTLSSQLTVNPNTIQKAYRELE 60
           MF+LD+RSR PIYEQL +K+KE I++ +L+ DEQLPSVR LS QLT+NPNTIQKAYRELE
Sbjct: 1   MFDLDLRSRLPIYEQLVEKIKESIINEVLKTDEQLPSVRILSQQLTINPNTIQKAYRELE 60

Query: 61  REGYIYSLQGKGSFVAPLQQGQNESKKXXXXXXXXXXXXXXVYLGFTENEIGALYRQVLE 120
           R+GYIYSL GKGSFVA +   +N  K               +YLG    EI A+  QV  
Sbjct: 61  RQGYIYSLPGKGSFVARIDHQKNNEKLAKLKEDLIKILSEAMYLGMKHEEIMAIISQVES 120

Query: 121 QREKGE 126
              +GE
Sbjct: 121 TVRRGE 126


>B7GHY4.1 B7GHY4_ANOFW Transcriptional regulator (GntR family)
          Length = 131

 Score =  127 bits (318), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 57/76 (75%), Positives = 70/76 (92%)

Query: 1  MFELDVRSRKPIYEQLNDKVKELIMHGILRADEQLPSVRTLSSQLTVNPNTIQKAYRELE 60
          MF+LD+RSRKPIYEQL +K+K++I+H +L+ +EQLPSVR L+ QLT+NPNTIQKAYRELE
Sbjct: 1  MFDLDLRSRKPIYEQLIEKIKKMIIHDVLKPNEQLPSVRLLAKQLTINPNTIQKAYRELE 60

Query: 61 REGYIYSLQGKGSFVA 76
          REGYIYS+ GKGSFVA
Sbjct: 61 REGYIYSIPGKGSFVA 76


>C5D2C2.1 C5D2C2_9BACI Transcriptional regulator, GntR family
          Length = 138

 Score =  125 bits (313), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/126 (50%), Positives = 86/126 (68%), Gaps = 4/126 (3%)

Query: 1   MFELDVRSRKPIYEQLNDKVKELIMHGILRADEQLPSVRTLSSQLTVNPNTIQKAYRELE 60
           MFELD+RSR+PIYEQL +K+KE+I+  I +  EQLPSVR L+ QLT+NPNTIQKAYRELE
Sbjct: 1   MFELDIRSRQPIYEQLVEKMKEMIIREIWKPHEQLPSVRMLAKQLTINPNTIQKAYRELE 60

Query: 61  REGYIYSLQGKGSFVAPLQQGQNESKKXXXXXXXXXXXXXXVYLGFTENEIGALYRQVLE 120
            +G+IYS+ GKG+FV+P  +  ++ K               ++LG  + E+     Q +E
Sbjct: 61  HQGFIYSIPGKGNFVSPQPKAASQEKIEAIRHDIVRLAAEALFLGVAKEEV----LQWIE 116

Query: 121 QREKGE 126
           Q E+GE
Sbjct: 117 QAEQGE 122


>B9MMM1.1 B9MMM1_ANATD Transcriptional regulator, GntR family
          Length = 128

 Score =  122 bits (307), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 57/118 (48%), Positives = 84/118 (71%)

Query: 1   MFELDVRSRKPIYEQLNDKVKELIMHGILRADEQLPSVRTLSSQLTVNPNTIQKAYRELE 60
           MFE+D +SR PIY+QL +++KELI+  +L+ +EQLPSVR+LS +LT+NPNTIQKAY+ELE
Sbjct: 1   MFEIDWKSRVPIYKQLVERIKELILKEVLKENEQLPSVRSLSKELTINPNTIQKAYQELE 60

Query: 61  REGYIYSLQGKGSFVAPLQQGQNESKKXXXXXXXXXXXXXXVYLGFTENEIGALYRQV 118
           REGYIYS+ GKG+FVAP++      K+               ++G +++E+  L  ++
Sbjct: 61  REGYIYSIPGKGNFVAPVKSKIKAEKEEKIKSQFKKIVFEAFFIGISKDELIKLIEEI 118


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.134    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 614,096,132
Number of extensions: 19830260
Number of successful extensions: 55976
Number of sequences better than 1.0e-05: 1974
Number of HSP's gapped: 56089
Number of HSP's successfully gapped: 1974
Length of query: 126
Length of database: 3,060,696,203
Length adjustment: 91
Effective length of query: 35
Effective length of database: 2,203,383,838
Effective search space: 77118434330
Effective search space used: 77118434330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)