BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0391.0031.p (667 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C5D2C0.1 C5D2C0_9BACI Putative uncharacterized protein 196 5e-48 B7GHY6.1 B7GHY6_ANOFW ABC-type multidrug transport system, perme... 189 7e-46 A6CJR6.1 A6CJR6_9BACI Putative uncharacterized protein 188 2e-45 Q93GK1.1 Q93GK1_BACST Putative uncharacterized protein 173 4e-41 A4J9J0.1 A4J9J0_DESRM Putative uncharacterized protein 173 5e-41 >C5D2C0.1 C5D2C0_9BACI Putative uncharacterized protein Length = 571 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 153/589 (25%), Positives = 259/589 (43%), Gaps = 49/589 (8%) Query: 1 LRQHGWIGIIYTXXXXXXXXXXXFMSRYPGAEPQKI----DTLFRVGGNIQMLFIISLPV 56 LR GWIGI++ M+ Y E I + L+ + Q + + +LPV Sbjct: 17 LRSVGWIGIVHFLLWFAAIPLQLLMA-YSQQEDGGIFPEWENLYSISAEFQTMIVFTLPV 75 Query: 57 AAGLFLFRYLQSRMASDLWHSLPLRR-EXXXXXXXXXXXXXXXXXXXXXXXXXXMVTPMN 115 LFRY+Q + +SD HSLP++R E ++ Sbjct: 76 LLATLLFRYMQGKQSSDFMHSLPVQRAELFCQQAVFGVGLVVLPIALISLLTIVCRYGLS 135 Query: 116 GNMYIYQGSDIWSWCLTVSILTLFLFVFSIFVGICTGQTVLQGXXXXXXXXXXXXXXXXX 175 +M + G DI W +I+ LF+F S+FVGI TG + LQ Sbjct: 136 LSMPLAIG-DIIRWTWETAIMELFVFAASVFVGIMTGMSTLQVVFTYILFLFPAGITMLL 194 Query: 176 XXHLNRYLYGYPEWFGLNNDRLVWSPLLHLIVLAEEPYSTGELWAYSGLSLVFIVFSYIL 235 + + L G+P + L+ + P + L EP + GE AY L +VF++F+ L Sbjct: 195 LTNTSFLLVGFPADYYLSQNLEAIVPFFRYLKLEAEPLTAGESLAYLLLIMVFLIFAIWL 254 Query: 236 YRKRSAEKSGQAIAFTYFNPLFKAGVMLCAMLLAGTYFAAVKPHQVGWILCSHFAGALLG 295 Y+KR +E + QA+AF P+FK GV C ML+ G YF A + +Q WI+ + + +G Sbjct: 255 YQKRHSEAATQALAFPALRPIFKYGVAFCTMLVGGFYFGATQ-NQFSWIVFGYVTFSFIG 313 Query: 296 YIAAEMIIRKTWHILSR-RVPLEFAVYGVLLGLLIYIPVSGLTGYESRVPAAEHITGVYA 354 + AEMII KTW + + + FA V++G+L+++ + TGYE R+PA E I VY Sbjct: 314 FFVAEMIIEKTWRVFHKWKGYAYFAAAMVVIGILVHLDI---TGYEKRLPALEDIRQVYF 370 Query: 355 GSNYRMYNDDSYNRYASGEVAKVSSGSRVPFSGGQQYVEAVRNLHQTLVTMRPDKNAFPL 414 G + + ++ Y E F ++ + AV HQ LV +P + F Sbjct: 371 GGSVYDFVENGQRSYEPFE-------QENQFLKEKENIHAVYAFHQQLVNDQPKPSPF-- 421 Query: 415 EGYTRGSRMFTLAYQLDNGRKMVREYRIPAQGFEPEMKAVMGNEDFKRAEYDI---QALN 471 R + Y L +G++M+R+Y +P+ + + ++ ++++K+ Y + Q + Sbjct: 422 ----TEQRQVVIGYVLKDGKRMIRQYHVPSDQYFSYFQPILESKEYKKNYYLLLRDQGYS 477 Query: 472 T--EIESFRLSSRNRVVRITEPEDVQEF----KDILIREKLNMSYEDQNEGQLPIAYIQP 525 ++ + + + I EP+ + F K L+ E + + Q I +Q Sbjct: 478 PIRQVAFHTPETGEKTLTIIEPQQIDSFIEALKADLMEESASAMLDSHKVWQGDIELLQ- 536 Query: 526 INKPADEEEGSGRAMVTVTRNYEWLPSYKELGNWMEQKGYADKIRTTAQ 574 +G T + W +Y + W++ +K R A+ Sbjct: 537 -------SDGD-------TIHLMWKKTYTHVEKWLKDHHLLEKARGNAE 571 >B7GHY6.1 B7GHY6_ANOFW ABC-type multidrug transport system, permease component Length = 642 Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 160/641 (24%), Positives = 275/641 (42%), Gaps = 73/641 (11%) Query: 1 LRQHGWIGIIYTXXXXXXXXXXXFM--SRYPGAEPQKIDTLFRVGGNIQMLFIISLPVAA 58 +R GW+ +IY FM + +F +G IQ + +LPV Sbjct: 24 VRNVGWVSLIYFIGLLFALPIHIFMMTENKDWLMHHQTGRIFDIGSPIQFALMFTLPVLL 83 Query: 59 GLFLFRYLQSRMASDLWHSLPLRREXXXXXXXXXXXXXXXXXXXXXX-XXXXMVTPMNGN 117 +FLFRY+Q +M++D HSLP++RE M + + + Sbjct: 84 AVFLFRYMQVKMSADYMHSLPIKREALFLQHIIVGMIVLIVPITLIAGCLIVMKSFLPIS 143 Query: 118 MYIYQGSDIWSWCLTVSILTLFLFVFSIFVGICTGQTVLQGXXXXXXXXXXXXXXXXXXX 177 +Y + IW + TV+ + L LF ++FVG+ TG +LQG Sbjct: 144 LYSLKHVAIW-FAGTVA-MNLLLFSGAVFVGMLTGMPILQGMFAYILFFFPAGIFILLIF 201 Query: 178 HLNRYLYGYPEWFGLNNDRLVWSPLLHLIVLAEEPYSTGELWAYSGLSLVFIVFSYILYR 237 +L +LYG+ + L++ P + + E E+ Y+ L+ +F S LY+ Sbjct: 202 NLKYFLYGFAYEYYLSSSLNEMIPFIQALNWETERIQPLEILIYTVLTFMFYGLSIWLYK 261 Query: 238 KRSAEKSGQAIAFTYFNPLFKAGVMLCAMLLAGTYFAAVKPHQVGWILCSHFAGALLGYI 297 KR E + AI F P+F G C ML+ G YF ++ ++ W++ + +L GYI Sbjct: 262 KRHVEMATDAIVFRPLRPVFTYGFTFCVMLVGGAYFGQIQ-EKMSWVIFGYVFSSLFGYI 320 Query: 298 AAEMIIRKTWHILSR-RVPLEFAVYGVLLGLLIYIPVSGLTGYESRVPAAEHITGVYAGS 356 A MI+ KTW + S + + + V+ ++GLL L GY++ P+ I Y G Sbjct: 321 IARMILAKTWRVFSSWKEYMGYVVFMSIVGLLF---TFDLFGYKAYQPSLSEIERAYFGD 377 Query: 357 NYRMYNDDSYNRYASGEVAKVSSGSRVPFSGGQQYVEAVRNL---HQTLVTMRPDKNAFP 413 + + +D N + K E +RN+ HQ L+ ++ +P Sbjct: 378 HIYFFENDEINEENAFYYEK----------------ENIRNIYLFHQHLI----EQQTYP 417 Query: 414 LEGYTRGSRMFTLAYQLDNGRKMVREYRIPAQGFEPEMKAVMGNEDFKRAEYDI-QALNT 472 + R + Y L NG+++VR+Y +P + K + + +FK+ Y I + N Sbjct: 418 VN----DRRNVVIGYDLKNGKRVVRQYTVPMNLYNQFYKPIFNSIEFKKNHYPILRKTNF 473 Query: 473 E-IESFRLSSRNRVVRITEPEDVQEFKDI----LIREKLNMSYEDQNEGQLPIAYIQPIN 527 E I R+ S + VR+ + D++ F + L+ E + + +++ G + I Y Sbjct: 474 EDILQIRIGSEGKFVRLQDRADIESFLAVVQQQLLHETFDETTTNRSWGTISILY----- 528 Query: 528 KPADEEEGSGRAMVTVTRNYEWLPSYKELGNWMEQKGYADKIRTTAQDVKSAEIIKDDYK 587 EE + EW SY + W++ +G + R TA D+ +IIK+ + Sbjct: 529 --EKHEE----------QVIEWRKSYHLIEQWLQDRGLLQQARPTANDITEIKIIKNTKQ 576 Query: 588 GKLS---PEKIYNVELHMALARQQKLSVVTRDKKLIEGILE 625 L PE I ++K ++ DK+ IE L+ Sbjct: 577 VPLYEWIPEMI----------EREKSKMIVHDKQKIEQCLQ 607 >A6CJR6.1 A6CJR6_9BACI Putative uncharacterized protein Length = 650 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 158/621 (25%), Positives = 283/621 (45%), Gaps = 61/621 (9%) Query: 2 RQHGWIGIIYTXXXXXXXXXXXFMSRYPGAEPQKIDT---LFRVGGNIQMLFIISLPVAA 58 R GWIGI+Y +M EP + T +F++ +Q ++ +PV Sbjct: 18 RNTGWIGIVYFAGLIFALPLNVWM-MLTSEEPSYLLTYGQMFQINFVLQAGLMMVIPVLL 76 Query: 59 GLFLFRYLQSRMASDLWHSLPLRREXXXXXXXXXXXXXXXXXXXXXXXXXXMVTPMNGNM 118 +F FR+L + +D+ HSLP+RR+ +T N Sbjct: 77 SIFSFRFLHVKQQADMIHSLPIRRKKLFMHFSAAGIIMLILPVVFTAMIMVFLTLTNDLG 136 Query: 119 YIYQGSDIWSWCLTVSILTLFLFVFSIFVGICTGQTVLQGXXXXXXXXXXXXXXXXXXXH 178 +Q DI SW L ++ + +V I V + TG +V+Q + Sbjct: 137 SHFQADDIISWALVTILMVVLFYVCGITVAMITGLSVVQAVLTYVLLLFPSGMYILSVLN 196 Query: 179 LNRYLYGYPEWFGLNNDRLVWSPLLHLIVLAEEPYSTGELWAYSGLSLVFIVFSYILYRK 238 + +L+G+PE + L +SP++ + E S E+ Y L VF + + +LY++ Sbjct: 197 IKNFLFGFPEEYYLAVRSEDFSPIIKAGLFNEVQLSFTEIIIYVFLIFVFWILALVLYKR 256 Query: 239 RSAEKSGQAIAFTYFNPLFKAGVMLCAMLLAGTYFAAVKPHQVGWILCSHFAGALLGYIA 298 R E + Q AF P+FK G+++ ML++G YF+AV+ + W L + G +GY+ Sbjct: 257 RKIETTSQTFAFPVLQPVFKFGLIIGVMLVSGGYFSAVQK-TLPWTLFGYGVGFAVGYLL 315 Query: 299 AEMIIRKTWHILSRRVPLEFAVYGVLL-GLLIYIPVSGLTGYESRVPAAEHITGVYAGSN 357 +EMI++KTW I R E A++ L G+ ++I G YES VP I +Y Sbjct: 316 SEMIVQKTWRIGLRLK--EMAIFAFFLTGIAVFIHF-GFKNYESYVPDLNEIERIY---- 368 Query: 358 YRMYNDDSYNRYASGEVAKVSSGSRVPFSGGQQYVEAVRNLHQTLVTMRPDKNAFPLEGY 417 +ND Y+ E V + ++ + V++LH +++ DK Sbjct: 369 ---FNDHIYSYLEEYEEEPVR------YLSNEENIRNVKDLHGAIIS---DKE------- 409 Query: 418 TRGSRMFTLAYQLDNGRKMVREYRIPAQGFEPEMKAVMGNEDFKRAEYDIQALNTEI-ES 476 ++GS + Y+L G+K++R Y I F+ +++ + ++K + + I +++T + + Sbjct: 410 SKGSVQLYIVYELKAGKKVIRNYEIDRTHFDFYYESIYESVEYKESAHQILSVDTHLADK 469 Query: 477 FRLSSR---NRVVRITEPEDVQEFKDILIREKLNMSYE---DQNEGQLPIAYIQPINKPA 530 +++R ++ V IT+ ++E D L +E L SYE D++E I + A Sbjct: 470 LTITARGPQDKQVSITDESLLEEAIDKLKKEVLEESYESMVDRSETLYDIEILL-----A 524 Query: 531 DEEEGSGRAMVTVTRNY-EWLPSYKELGNWMEQKGYADKIRTTAQDVKSAEIIK-DDYKG 588 +E+ R Y W PSY W+ +K ++++ +DV I K +D++ Sbjct: 525 NEQ-----------RLYVPWKPSYSNFETWLMEKDLFNQVKVLPEDVSKILIYKREDHQT 573 Query: 589 KLSPEKIYNVELHMALARQQK 609 L E V+LH ++A ++ Sbjct: 574 PLGME----VDLHDSIATLEE 590 >Q93GK1.1 Q93GK1_BACST Putative uncharacterized protein Length = 505 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 133/469 (28%), Positives = 216/469 (46%), Gaps = 21/469 (4%) Query: 1 LRQHGWIGIIYTXXXXXXXXXXXFMS---RYPGAEPQKIDTLFRVGGNIQMLFIISLPVA 57 LR GWIGI++ M+ + G + ++L+ + Q + + +LPV Sbjct: 20 LRSVGWIGIVHFLLWFAAIPLQLLMAYSQQKDGGIYPEWESLYSISAPFQSMIVFTLPVL 79 Query: 58 AGLFLFRYLQSRMASDLWHSLPLRREXXXXXXXXXXXXXXXXXXXXXXXXXXMVTPMNGN 117 FLFRY+Q + +SD HSLP++R + Sbjct: 80 LAAFLFRYMQGKPSSDFMHSLPVQRAELFCQQVVFGVMLIVIPIVLISLLTVVCRYGLSL 139 Query: 118 MYIYQGSDIWSWCLTVSILTLFLFVFSIFVGICTGQTVLQGXXXXXXXXXXXXXXXXXXX 177 SDI W +I+ LF+F +FVG+ TG + LQ Sbjct: 140 SVPLTISDIIRWMWETAIMELFVFAAGVFVGMMTGMSTLQVVFTYILFLFPAGITVLLLT 199 Query: 178 HLNRYLYGYPEWFGLNNDRLVWSPLLHLIVLAEEPYSTGELWAYSGLSLVFIVFSYILYR 237 + + L G+ + L+ + P + L EP + GE AY L ++F++F+ LY+ Sbjct: 200 NASFLLVGFSVNYYLSKNLEEIVPFYRYLNLQAEPLTAGESLAYLLLIILFLIFAIWLYQ 259 Query: 238 KRSAEKSGQAIAFTYFNPLFKAGVMLCAMLLAGTYFAAVKPHQVGWILCSHFAGALLGYI 297 KR +E + QA+AF P+FK GV C MLL G YF V +Q WI+ + + +G+ Sbjct: 260 KRHSEAATQALAFPVLRPVFKYGVAFCTMLLGGLYF-GVTQNQFSWIVFGYVTFSFIGFF 318 Query: 298 AAEMIIRKTWHILSR-RVPLEFAVYGVLLGLLIYIPVSGLTGYESRVPAAEHITGVYAGS 356 AEMII KTW + + + + FA V +G+L+++ + TGYE R+PA E I VY GS Sbjct: 319 VAEMIIEKTWRVFHKWKGYVYFAAAMVAVGILVHLDI---TGYEKRLPALEDIRQVYFGS 375 Query: 357 NYRMYNDDSYNRYASGEVAKVSSGSRVPFSGGQQYVEAVRNLHQTLVTMRPDKNAFPLEG 416 + Y+ +GE + V F ++ + AV HQ LV +P FP E Sbjct: 376 S-------VYDFVENGERSYVPFEQENQFLKEKENIRAVYTFHQQLVKDQP--RPFPSE- 425 Query: 417 YTRGSRMFTLAYQLDNGRKMVREYRIPAQGFEPEMKAVMGNEDFKRAEY 465 R + Y +G++M+REY +P + + + ++ ++++K+ Y Sbjct: 426 ---AQRQVVIGYVFKDGKRMIREYSVPIESYLSYYQPILESKEYKKNYY 471 >A4J9J0.1 A4J9J0_DESRM Putative uncharacterized protein Length = 666 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 142/592 (23%), Positives = 259/592 (43%), Gaps = 47/592 (7%) Query: 1 LRQHGWIGIIYTXXXXXXXXXXXFMSRYPGAEPQ--KIDTLFRV-GGNIQMLFIISLPVA 57 L++ W+GI+YT M+ Y +P I LF + GG++Q + ++ + + Sbjct: 17 LKRFSWLGILYTLALFFVVPLHILMT-YGQEDPDYTVIKELFYLNGGDMQGVLVLVVSLF 75 Query: 58 AGLFLFRYLQSRMASDLWHSLPLRREXXXXXXXXXXXXXXXXXXXXXXXXXXMVTPMNGN 117 G+F+FRY+Q + +SD+ HSLP++R+ ++ Sbjct: 76 MGIFIFRYMQVKNSSDMMHSLPIKRKVLYRTHILTSLILLILPVLLTAFISLILNQTLDL 135 Query: 118 MYIYQGSDIWSWCLTVSILTLFLFVFSIFVGICTGQTVLQGXXXXXXXXXXXXXXXXXXX 177 + DI W + + L +F +FVG+ G +V+QG Sbjct: 136 GAYFNILDIAIWAGFIILTELAIFFVCVFVGMLVGMSVVQGIIATIFLFLPLGLTVLLTD 195 Query: 178 HLNRYLYGYPEWFGLNNDRLVWSPLLHLI--VLAEEPYSTGELWAYSGLSLVFIVFSYIL 235 LN +LYG+ + +N ++L SP++ L+ GE+ Y + L + L Sbjct: 196 SLNIFLYGFAYNWQINEEKL--SPIVRLLDGFNDTNKMGNGEIATYIIVCLGLYFLAQFL 253 Query: 236 YRKRSAEKSGQAIAFTYFNPLFKAGVMLCAMLLAGTYFAAVKPHQVGWILCSHFAGALLG 295 Y KR E + Q IAF +F +FK GV LC ML+AG+YF + H + WI+ + G+L+G Sbjct: 254 YDKRKLETASQTIAFQHFRWVFKFGVTLCTMLVAGSYFYHTQ-HNINWIIFGYVFGSLIG 312 Query: 296 YIAAEMIIRKTWHILSRRVPLEFAVYGVLLGLLIYIPVS---GLTGYESRVPAAEHITGV 352 Y AEM+++KT+ + YG+ G++I I + L GYE R+P I + Sbjct: 313 YYVAEMVLKKTFFVFKN-----IKDYGIYAGVIIVIFLGLHFDLMGYERRLPEVNEIKSI 367 Query: 353 YAGSNYRMYNDDSYNRYASGEVAKVSSGSRVPFSGGQQYVEAVRNLHQTLVTMRPDKNAF 412 G + + + +G+ V + ++ + LHQ L+ + +N + Sbjct: 368 SFG--------NGFYEFENGQKLYVDRAN----------IKNIYLLHQQLIKDKL-QNKY 408 Query: 413 PLEGYTRGSRMFTLAYQLDNGRKMVREYRIPAQGFEPEMKAVMGNEDFKRAEYD-IQALN 471 G + +R L Y L +G ++ R Y I + +K + ++++K+ YD ++ Sbjct: 409 ---GNKKSTRERVLVYHLRDGSQITRGYSINDDCYTQYLKPIYESKEYKKFYYDALRVAA 465 Query: 472 TEIESFRLS-----SRNRVVRITEPEDVQEFKDILIREKLNMSYEDQNEGQLPIAYIQPI 526 +++E + + I PE+++E IL ++ +YE + + A I+ + Sbjct: 466 SDVEKMTIQPSLDRQDTKEAVILNPEEIKEALHILKQDIEAETYEQMTDHRTAWASIRLL 525 Query: 527 NKPADEEEGSGRAMVTVTRNY--EWLPSYKELGNWMEQKGYADKIRTTAQDV 576 ++ M R W SY W++ KGY R +++ Sbjct: 526 ISDDKMKKYRKGEMDKDRREIYTSWEKSYGNFEAWLKDKGYLKNARILPEEI 577 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,735,273,448 Number of extensions: 153101455 Number of successful extensions: 386485 Number of sequences better than 1.0e-05: 18 Number of HSP's gapped: 386417 Number of HSP's successfully gapped: 19 Length of query: 667 Length of database: 3,060,696,203 Length adjustment: 143 Effective length of query: 524 Effective length of database: 1,713,491,058 Effective search space: 897869314392 Effective search space used: 897869314392 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 135 (56.6 bits)