BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0391.0024.p (172 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K9S1.1 B3K9S1_9BACI Uracil-DNA glycosylase superfamily 272 7e-72 A6CPG7.1 A6CPG7_9BACI G/U mismatch-specific DNA glycosylase 217 3e-55 Q2BAG9.1 Q2BAG9_9BACI G/U mismatch-specific DNA glycosylase 177 3e-43 Q1J3D2.1 Q1J3D2_DEIGD Uracil-DNA glycosylase superfamily 144 2e-33 Q67QW8.1 Q67QW8_SYMTH G/U mismatch-specific DNA glycosylase 141 2e-32 >B3K9S1.1 B3K9S1_9BACI Uracil-DNA glycosylase superfamily Length = 171 Score = 272 bits (696), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 131/169 (77%), Positives = 149/169 (88%), Gaps = 2/169 (1%) Query: 1 MDEVPDHLDHGLQIVFIGFNPSLRSGEVGHHYANPRNNFWRILERSGLTPRLYDASEDGE 60 MDEV DHLD+GL +VFIGFNPSLRSGEVGHHYANPRNNFWRIL +SGLTPRLY+A+EDGE Sbjct: 1 MDEVSDHLDYGLTLVFIGFNPSLRSGEVGHHYANPRNNFWRILHKSGLTPRLYEAAEDGE 60 Query: 61 LLRLGLGFTNIVARPTRGAEDITREEYAEGRQILREKLARHRPEIACFVGKGVYTEFSRR 120 LL+LG GFTNIVARPTRGAEDITREEY GR+ LR+KL +RPE+ACFVGKGVYTE+S + Sbjct: 61 LLKLGYGFTNIVARPTRGAEDITREEYRLGRETLRKKLEEYRPEVACFVGKGVYTEYSGK 120 Query: 121 PKADWGFQDGQPPVVDGVREFVAPSSSGLVRMPLPEIVAIYRRLYEYIQ 169 KADWG Q VVDGVREFVAPSSSGLVRMP+ EI+ IYR+L+++I Sbjct: 121 AKADWGIQ--PDSVVDGVREFVAPSSSGLVRMPMDEIIGIYRQLHDWIS 167 >A6CPG7.1 A6CPG7_9BACI G/U mismatch-specific DNA glycosylase Length = 170 Score = 217 bits (553), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 104/166 (62%), Positives = 127/166 (76%), Gaps = 2/166 (1%) Query: 1 MDEVPDHLDHGLQIVFIGFNPSLRSGEVGHHYANPRNNFWRILERSGLTPRLYDASEDGE 60 M +PDHL L IVFIGFNPSL+SGEVGH+YAN N FW+IL SGLTPR Y ED Sbjct: 1 MQPLPDHLKENLDIVFIGFNPSLKSGEVGHNYANKSNRFWKILHLSGLTPRQYAPEEDYT 60 Query: 61 LLRLGLGFTNIVARPTRGAEDITREEYAEGRQILREKLARHRPEIACFVGKGVYTEFSRR 120 LL+LG G TNIV RPT+ A DIT+EEY+EGR IL+ KL ++ P+IAC+VGKGVY +FS++ Sbjct: 61 LLQLGYGLTNIVERPTKEAADITKEEYSEGRVILKNKLKKYSPKIACYVGKGVYQQFSKK 120 Query: 121 PKADWGFQDGQPPVVDGVREFVAPSSSGLVRMPLPEIVAIYRRLYE 166 K +WG Q+ VV+GV +FVAPSSSGLVRM + EIV+IY+ L E Sbjct: 121 RKIEWGIQE--ESVVEGVIDFVAPSSSGLVRMKIDEIVSIYKELTE 164 >Q2BAG9.1 Q2BAG9_9BACI G/U mismatch-specific DNA glycosylase Length = 167 Score = 177 bits (449), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 85/159 (53%), Positives = 110/159 (69%), Gaps = 2/159 (1%) Query: 12 LQIVFIGFNPSLRSGEVGHHYANPRNNFWRILERSGLTPRLYDASEDGELLRLGLGFTNI 71 + I+F+GFNPS+RS E GHH+ANP N FW+IL +G+TP+ + ED LL L +G TNI Sbjct: 1 MDIIFVGFNPSIRSAETGHHFANPNNRFWKILYEAGITPKKFLPQEDSLLLDLNIGLTNI 60 Query: 72 VARPTRGAEDITREEYAEGRQILREKLARHRPEIACFVGKGVYTEFSRRPKADWGFQDGQ 131 V RPT+ A++ITREEY EGR+ L + +P+ CFVGKGVY E+S KA WG QD Sbjct: 61 VPRPTKAADEITREEYKEGRERLISLITELKPKAVCFVGKGVYLEYSGSKKAPWGRQDIS 120 Query: 132 PPVVDGVREFVAPSSSGLVRMPLPEIVAIYRRLYEYIQE 170 +V GV EF APSSSGLVRM + E++ IY+ L + E Sbjct: 121 --IVPGVIEFAAPSSSGLVRMKMDEVIDIYKELPAIVYE 157 >Q1J3D2.1 Q1J3D2_DEIGD Uracil-DNA glycosylase superfamily Length = 177 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 76/165 (46%), Positives = 102/165 (61%), Gaps = 2/165 (1%) Query: 6 DHLDHGLQIVFIGFNPSLRSGEVGHHYANPRNNFWRILERSGLTPRLYDASEDGELLRLG 65 D + G+Q++F+GFNPS RS + GHHYA N FWR+L SGLTPRL ED L R G Sbjct: 13 DLVAEGVQVLFVGFNPSPRSVQQGHHYAGRGNQFWRLLAASGLTPRLLRPEEDHLLPRWG 72 Query: 66 LGFTNIVARPTRGAEDITREEYAEGRQILREKLARHRPEIACFVGKGVYTEFSRRPKADW 125 LG TN+VARPT A +++R E G LR +AR++ + + GKGVY + + +A W Sbjct: 73 LGSTNLVARPTVSAAELSRSELRAGVPHLRRLVARYQVPLVAYTGKGVYLAATGKQQAHW 132 Query: 126 GFQDGQPPVVDGVREFVAPSSSGLVRMPLPEIVAIYRRLYEYIQE 170 G Q+ ++ GV +FV PS SGL R+P E + YR L E Q+ Sbjct: 133 GAQEDS--LIGGVTDFVLPSPSGLARLPFAEKLGYYRALAELAQQ 175 >Q67QW8.1 Q67QW8_SYMTH G/U mismatch-specific DNA glycosylase Length = 177 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 75/168 (44%), Positives = 103/168 (61%), Gaps = 2/168 (1%) Query: 4 VPDHLDHGLQIVFIGFNPSLRSGEVGHHYANPRNNFWRILERSGLTPRLYDASEDGELLR 63 +PD+L GL++VF+GFNP S GH+YA P N F+ +L ++GLT R Y ED LL Sbjct: 5 LPDYLAPGLRVVFVGFNPGETSAREGHYYAYPGNRFYWLLWQAGLTERRYAPHEDARLLE 64 Query: 64 LGLGFTNIVARPTRGAEDITREEYAEGRQILREKLARHRPEIACFVGKGVYTEFSRRPKA 123 +G G T++V R TR + D++ E GR+ L KLAR+RP +AC+ GKG+Y + R + Sbjct: 65 IGYGLTDLVGRSTRSSGDLSAAELRSGREELLAKLARYRPRVACYNGKGIYAALTGRRRV 124 Query: 124 DWGFQDGQPPVVDGVREFVAPSSSGLVRMPLPEIVAIYRRLYEYIQEG 171 +G Q V+ GV +FVA S SG R PL E + +YR L I EG Sbjct: 125 AYGLQP--ESVIPGVLDFVAASPSGRSREPLAEKLRLYRELRALIAEG 170 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.142 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,178,851,950 Number of extensions: 51747366 Number of successful extensions: 92028 Number of sequences better than 1.0e-05: 265 Number of HSP's gapped: 91817 Number of HSP's successfully gapped: 265 Length of query: 172 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 46 Effective length of database: 1,873,648,313 Effective search space: 86187822398 Effective search space used: 86187822398 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)