BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0391.0021.p
         (222 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KH46.1 B3KH46_9BACI Putative uncharacterized protein                111   6e-23
B1D5M8.1 B1D5M8_9BACL Putative uncharacterized protein                100   1e-19
B1D5M7.1 B1D5M7_9BACL Putative uncharacterized protein                 96   2e-18
A6NVJ0.1 A6NVJ0_9BACE Putative uncharacterized protein                 60   2e-07
A3DJV5.1 A3DJV5_CLOTH Putative uncharacterized protein                 57   2e-06

>B3KH46.1 B3KH46_9BACI Putative uncharacterized protein
          Length = 229

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 67/92 (72%), Gaps = 4/92 (4%)

Query: 3  KKWLIAAVAAGMTITGSAGVYAGAKLEQIKAYLNHSIGVVVDGTPYWLKDGNGKTLTPIT 62
          KK + A    GMT+TG+AGVYAGA LE+I AYLNHSIG+ VDGT Y      GK LTPIT
Sbjct: 5  KKSIAAVAVLGMTLTGAAGVYAGANLEKISAYLNHSIGIQVDGTVY----NTGKKLTPIT 60

Query: 63 YEGITYLPVRSVAGALKVPITYDAANYKVRIG 94
          Y+  TYLPVR++A  L+VP+ YDA N +V IG
Sbjct: 61 YQNTTYLPVRAIADVLEVPVRYDAKNNQVLIG 92


>B1D5M8.1 B1D5M8_9BACL Putative uncharacterized protein
          Length = 493

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 63/92 (68%)

Query: 3  KKWLIAAVAAGMTITGSAGVYAGAKLEQIKAYLNHSIGVVVDGTPYWLKDGNGKTLTPIT 62
          K+ +   + AGMT++G+AGVYAG  +E+I A+LNHSIG  ++G+ Y  KD NG  L PIT
Sbjct: 6  KRTVATMMIAGMTVSGAAGVYAGTNMEKISAFLNHSIGFKINGSTYIPKDENGNALAPIT 65

Query: 63 YEGITYLPVRSVAGALKVPITYDAANYKVRIG 94
          Y   TYLPVR+++ AL  PI YD+    + IG
Sbjct: 66 YHDTTYLPVRALSNALNTPIQYDSKTNTIYIG 97


>B1D5M7.1 B1D5M7_9BACL Putative uncharacterized protein
          Length = 493

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 63/92 (68%)

Query: 3  KKWLIAAVAAGMTITGSAGVYAGAKLEQIKAYLNHSIGVVVDGTPYWLKDGNGKTLTPIT 62
          K+ +   + AGMT++G+AG +AG  +E+I A+LNH IG +++G+ Y  KD +G  L+PIT
Sbjct: 6  KRTVATMMIAGMTVSGAAGAFAGTNMEKISAFLNHGIGFIINGSTYIPKDEDGNKLSPIT 65

Query: 63 YEGITYLPVRSVAGALKVPITYDAANYKVRIG 94
          Y   TYLPVR+++ AL  PI YD+    + IG
Sbjct: 66 YHDTTYLPVRALSNALNTPIQYDSRTNTIYIG 97


>A6NVJ0.1 A6NVJ0_9BACE Putative uncharacterized protein
          Length = 562

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 3/86 (3%)

Query: 6  LIAAVAAGMTITGSAGVYAGAKLEQIKAYLNHSIGVVVDGTPYWLKDGNGKTLTPITYEG 65
          +IAAV  G+   G AG  +G  ++QI A L   I V VDG    + D NGKT+ PI+YEG
Sbjct: 10 VIAAVLLGVLAIG-AGAASG--IQQIIADLRPDITVEVDGMARTMTDKNGKTVYPISYEG 66

Query: 66 ITYLPVRSVAGALKVPITYDAANYKV 91
           TYLPVR++   L   + +D+A   V
Sbjct: 67 TTYLPVRALGEILGQTVEWDSATQTV 92


>A3DJV5.1 A3DJV5_CLOTH Putative uncharacterized protein
          Length = 235

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 21 GVYAGAKLE-QIKAYLNHSIGVVVDGTPYWLKDGNGKTLTPITYEGITYLPVRSVAGALK 79
          GV AG+ L  +IKA L+  + V   G    +KDG G  + PI Y G TYLP+R+V+  L 
Sbjct: 10 GVIAGSSLTTEIKAVLSREVTVRYGGEVQHMKDGLGNPVYPIIYNGTTYLPIRAVSNMLD 69

Query: 80 VPITYDAANYKVRIG 94
          +P+ +DA    V +G
Sbjct: 70 IPVAWDATTKTVILG 84


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,198,799,270
Number of extensions: 45489509
Number of successful extensions: 97867
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 97865
Number of HSP's successfully gapped: 9
Length of query: 222
Length of database: 3,060,696,203
Length adjustment: 131
Effective length of query: 91
Effective length of database: 1,826,543,238
Effective search space: 166215434658
Effective search space used: 166215434658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 128 (53.9 bits)