BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0391.0017.p
         (190 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DHT5.1 B1DHT5_9BACL Putative uncharacterized protein                130   4e-29
B3KGH4.1 B3KGH4_9BACI Putative uncharacterized protein                102   2e-20

>B1DHT5.1 B1DHT5_9BACL Putative uncharacterized protein
          Length = 189

 Score =  130 bits (328), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 112/189 (59%), Gaps = 1/189 (0%)

Query: 1   MRTIKKLIFATMCLMIISGGSLLYAATGKSDIAVYLNNVLLKNTGLVSEGVPYVSVEQLP 60
           M+   K +   + ++ + GG+L++A +    + V +N   L + G++ +G  Y+ + Q+ 
Sbjct: 1   MKVRFKKVAILLAILSVFGGTLIFADSASQKVRVIVNGSELDDGGIIVDGKTYLPLRQMV 60

Query: 61  EGLHAVLSWDETAQEVRIYKPNVNMVLLDDQGKIFGKVRSAASNTFSVLVQVDHLKTDIS 120
             L+A++ WD  +++  I KPNV+M+L  D+  IFG V      TF+V  Q+D+LKTDIS
Sbjct: 61  NSLNALVDWDNQSKKATINKPNVHMILFQDK-VIFGNVDKGNKYTFNVFSQIDNLKTDIS 119

Query: 121 DLKITITDPQNKTDVVDNQQIKEKKDSFWFKSANYSYTFNEKGNYMIQVYIKDSSSKSWF 180
            +K++ITDP     V+ +Q +   KD+FW+++ +  Y F   G Y ++ Y+K S S  W 
Sbjct: 120 AVKVSITDPYGTEKVIQSQNVSITKDNFWYRTEDIKYNFEYAGKYAVRFYLKTSPSDDWT 179

Query: 181 IVSEMQIST 189
           +VSE  I++
Sbjct: 180 VVSEKLITS 188


>B3KGH4.1 B3KGH4_9BACI Putative uncharacterized protein
          Length = 184

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 99/186 (53%), Gaps = 6/186 (3%)

Query: 5   KKLIFATMCLMIISGGSLLYAATGKSDIAVYLNNVLLKNTGLVSEGVPYVSVEQLPEGLH 64
           KK++   + L ++ G +LL+A +    + V+LN   LK+ G + +G  YV V +      
Sbjct: 4   KKVMACMLVLSLMGGSTLLFADSVNERVRVWLNGRELKDGGYLIDGKTYVPVREF----D 59

Query: 65  AVLSWDETAQEVRIYKPNVNMVLLDDQGKIFGKVRSAASNTFSVLVQVDHLKTDISDLKI 124
             + W+    +V++ KPNV++ L      +FG V       F+V  QVD L  +I  +K+
Sbjct: 60  GAVDWNSANGQVQVVKPNVHIFLFKGD-TVFGNVNKGKL-KFNVFSQVDSLNNNIHAVKV 117

Query: 125 TITDPQNKTDVVDNQQIKEKKDSFWFKSANYSYTFNEKGNYMIQVYIKDSSSKSWFIVSE 184
            I DP      + +Q++K++KD+FWF++ +++Y F   G Y +  Y+K  S   +  V+E
Sbjct: 118 AIEDPSGNIKDIQSQEVKDRKDNFWFRTYDFTYDFKTAGKYSVGFYVKVKSDDGFVKVAE 177

Query: 185 MQISTI 190
             I+ +
Sbjct: 178 KVITAL 183


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.132    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,042,830,629
Number of extensions: 40383386
Number of successful extensions: 126233
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 126232
Number of HSP's successfully gapped: 2
Length of query: 190
Length of database: 3,060,696,203
Length adjustment: 128
Effective length of query: 62
Effective length of database: 1,854,806,283
Effective search space: 114997989546
Effective search space used: 114997989546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)