BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0391.0016.p
         (154 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D5N6.1 B1D5N6_9BACL Transcriptional regulator, BadM/Rrf2 family     127   4e-28
B3KCU7.1 B3KCU7_9BACI Putative uncharacterized protein                105   1e-21
Q5WI76.1 Q5WI76_BACSK Transcriptional regulator                        93   9e-18
Q2BCF8.1 Q2BCF8_9BACI Transcriptional regulator                        89   1e-16
A6CKD0.1 A6CKD0_9BACI Transcriptional regulator                        77   5e-13

>B1D5N6.1 B1D5N6_9BACL Transcriptional regulator, BadM/Rrf2 family
          Length = 166

 Score =  127 bits (318), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 65/141 (46%), Positives = 97/141 (68%), Gaps = 1/141 (0%)

Query: 11  RTRNSGAPPYKSFVLVLQALIIMARKEGNTCSSCEIAGHLSSEPTVLRKALAKLTKEQIL 70
           + R S AP +K F L LQAL++++RK  N C+S E+AGH+ SE T+LR+ LAKL +EQ+L
Sbjct: 16  KERCSSAPNHKWFGLSLQALVVLSRKP-NACTSAELAGHMKSEATMLRRVLAKLAREQLL 74

Query: 71  VTREGRDGGYMLNRSPEELTLAEIYLAMEVDGLQSNAVIETMYGNTFGAQMKSACGGILE 130
            TREGRDGGY L R+PE +TLA++YLA+ V     + +++T   + FG +M+ A   I +
Sbjct: 75  ETREGRDGGYRLKRAPETITLADVYLALRVGEPLCSGMLDTTGIHDFGQEMRVAFMEITD 134

Query: 131 EMNQSALGILQKYTLADLVRR 151
           E+ +  L +L++ T+A L  R
Sbjct: 135 EVERRTLEVLRQVTIAQLSER 155


>B3KCU7.1 B3KCU7_9BACI Putative uncharacterized protein
          Length = 149

 Score =  105 bits (263), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 86/133 (64%), Gaps = 1/133 (0%)

Query: 18  PPYKSFVLVLQALIIMARKEGNTCSSCEIAGHLSSEPTVLRKALAKLTKEQILVTREGRD 77
             YK+F + +QAL+ + R  G  CSS +IA +L SE T++R+ L  L +  ++ +REGRD
Sbjct: 18  STYKTFSIAVQALVTLERHSGK-CSSGDIASYLHSESTLIRRVLKTLAQADLIESREGRD 76

Query: 78  GGYMLNRSPEELTLAEIYLAMEVDGLQSNAVIETMYGNTFGAQMKSACGGILEEMNQSAL 137
           GGY L ++  +++LAE+Y  ++V    S+++++   G+ F  ++K +  GIL E+ +S L
Sbjct: 77  GGYRLRKNARDISLAEVYSILQVHSSISDSMLDAAAGHCFAEEIKESFAGILSEIEESTL 136

Query: 138 GILQKYTLADLVR 150
            IL+  T+AD+ +
Sbjct: 137 KILESRTIADIAQ 149


>Q5WI76.1 Q5WI76_BACSK Transcriptional regulator
          Length = 148

 Score = 92.8 bits (229), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 79/125 (63%)

Query: 27  LQALIIMARKEGNTCSSCEIAGHLSSEPTVLRKALAKLTKEQILVTREGRDGGYMLNRSP 86
           LQ+L+ M+ ++ + C+S EIA H+ SE T+ R+ L++L K  I+  REGR+GGY L R P
Sbjct: 19  LQSLVFMSGQQKSHCASNEIAEHVCSEATLTRRVLSRLVKAGIVEAREGREGGYALRRKP 78

Query: 87  EELTLAEIYLAMEVDGLQSNAVIETMYGNTFGAQMKSACGGILEEMNQSALGILQKYTLA 146
           E+++ A++Y A++V       +++T     F  + +     ++ E  +  + +L+++T+A
Sbjct: 79  EDISFADVYRAIQVVDPLYTGLLDTTTSGPFAQETREMFTTVINESEKQLIQVLERHTIA 138

Query: 147 DLVRR 151
           DL+++
Sbjct: 139 DLIKK 143


>Q2BCF8.1 Q2BCF8_9BACI Transcriptional regulator
          Length = 141

 Score = 89.0 bits (219), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 74/137 (54%), Gaps = 2/137 (1%)

Query: 13  RNSGAPPYKSFVLVLQALIIMARKEGNTCSSCEIAGHLSSEPTVLRKALAKLTKEQILVT 72
           + S A   + F L LQAL+IMA  EG  C S  +A  + SE   LRK L  L KE ++  
Sbjct: 4   KTSSASSIRWFSLALQALLIMADNEG-LCPSARLADKIGSESGFLRKILRNLVKEGLVQA 62

Query: 73  REGRDGGYMLNRSPEELTLAEIYLAMEVDGLQSNAVIETMYGNTFGAQMKSACGGILEEM 132
           +EGRDGGY L + PE++ L+++Y  M  +   S   ++      F    +SA  G+  EM
Sbjct: 63  KEGRDGGYFLAKPPEDIRLSDVYAGMRAEPF-SKGFLDVSSKECFEPCTRSALSGLKNEM 121

Query: 133 NQSALGILQKYTLADLV 149
            Q  L  L++ TL DL+
Sbjct: 122 EQWILNGLEEKTLKDLM 138


>A6CKD0.1 A6CKD0_9BACI Transcriptional regulator
          Length = 206

 Score = 77.0 bits (188), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 74/131 (56%), Gaps = 2/131 (1%)

Query: 21  KSFVLVLQALIIMARKEGNTCSSCEIAGHLSSEPTVLRKALAKLTKEQILVTREGRDGGY 80
           K F + +QAL+++A  EG  C S  +A  L S+   LRK L  L KE+++  +EGRDGGY
Sbjct: 78  KWFGMAIQALLVLANHEG-LCPSGVLAEKLDSKSVFLRKILRHLVKEELIQAKEGRDGGY 136

Query: 81  MLNRSPEELTLAEIYLAMEVDGLQSNAVIETMYGNTFGAQMKSACGGILEEMNQSALGIL 140
            L ++PE++ L+++Y AM  +   S    +      F A  + +   + +EM    +  L
Sbjct: 137 YLVKNPEDIKLSDVYNAMRSETF-SKGFFDVESKECFAACTRDSLFELRDEMESWIVNGL 195

Query: 141 QKYTLADLVRR 151
           ++ T+ DL+++
Sbjct: 196 EQKTIKDLMKQ 206


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.132    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 831,581,665
Number of extensions: 28895836
Number of successful extensions: 78151
Number of sequences better than 1.0e-05: 63
Number of HSP's gapped: 78473
Number of HSP's successfully gapped: 63
Length of query: 154
Length of database: 3,060,696,203
Length adjustment: 116
Effective length of query: 38
Effective length of database: 1,967,858,463
Effective search space: 74778621594
Effective search space used: 74778621594
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)