BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0391.0011.p (251 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K9V1.1 B3K9V1_9BACI Peptidyl-prolyl cis-trans isomerase EC=5.2... 227 6e-58 A0Q3B7.1 A0Q3B7_CLONN Peptidyl-prolyl cis-trans isomerase EC=5.2... 221 5e-56 B1B8A5.1 B1B8A5_CLOBO Peptidyl-prolyl cis-trans isomerase EC=5.2... 221 6e-56 C4GBW2.1 C4GBW2_9FIRM Putative uncharacterized protein 213 2e-53 B1DK90.1 B1DK90_9BACL Peptidyl-prolyl cis-trans isomerase EC=5.2... 210 8e-53 >B3K9V1.1 B3K9V1_9BACI Peptidyl-prolyl cis-trans isomerase EC=5.2.1.8 Length = 241 Score = 227 bits (579), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 112/180 (62%), Positives = 129/180 (71%) Query: 72 EGLPSATASHPVVTIEMDNGGIIKAELYPEVAPNTVNNFISLIQKGFYDGTIFHRVIPGF 131 + +P ASHP+VTIEM+NG IK ELYPEVAPNTVNNFISL+++GFYDGT FHRVIPGF Sbjct: 62 QNVPDPNASHPIVTIEMENGKTIKLELYPEVAPNTVNNFISLVEQGFYDGTGFHRVIPGF 121 Query: 132 MIQXXXXXXXXXXXXXYSIAGEFTANGFTNNLQHTQGVLSMARSQDMNSGGSQFFIMAAA 191 MIQ Y+IAGEFT+NGF N+L+HT GVLSMAR+ D NS GSQFFIM A Sbjct: 122 MIQGGDPDGKGTGGPGYAIAGEFTSNGFQNDLKHTTGVLSMARAPDPNSAGSQFFIMVAD 181 Query: 192 YPSLDGQYAAFGKVTEGQDVVDAIVNLXXXXXXXXXXXXVMKKVTVDTLGVTYPEPEKVQ 251 PSLD QYA+FGKV EG + + IV L VMKKVTVDTLG YP+PEK + Sbjct: 182 APSLDAQYASFGKVIEGMETAEEIVGLERDQMDKPLEVPVMKKVTVDTLGKDYPDPEKQE 241 >A0Q3B7.1 A0Q3B7_CLONN Peptidyl-prolyl cis-trans isomerase EC=5.2.1.8 Length = 171 Score = 221 bits (562), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 111/170 (65%), Positives = 126/170 (74%) Query: 81 HPVVTIEMDNGGIIKAELYPEVAPNTVNNFISLIQKGFYDGTIFHRVIPGFMIQXXXXXX 140 +P+VTI+M+NG IIKAELYPEVAPNTVNNFISLI KGFYDG IFHRVIPGFMIQ Sbjct: 2 NPIVTIKMENGDIIKAELYPEVAPNTVNNFISLINKGFYDGVIFHRVIPGFMIQGGDPDG 61 Query: 141 XXXXXXXYSIAGEFTANGFTNNLQHTQGVLSMARSQDMNSGGSQFFIMAAAYPSLDGQYA 200 YSI GEFTANGF N+L+HT+GVLSMAR+ + NS GSQFFIM A P LDGQYA Sbjct: 62 TGMGGPGYSIKGEFTANGFKNDLKHTRGVLSMARAMNPNSAGSQFFIMVADAPHLDGQYA 121 Query: 201 AFGKVTEGQDVVDAIVNLXXXXXXXXXXXXVMKKVTVDTLGVTYPEPEKV 250 +FGKVTEG +V D IVN +M+KVTV+T GV Y EPE+V Sbjct: 122 SFGKVTEGMEVADKIVNSKTDYSDRPYEDQIMEKVTVETFGVDYKEPEEV 171 >B1B8A5.1 B1B8A5_CLOBO Peptidyl-prolyl cis-trans isomerase EC=5.2.1.8 Length = 171 Score = 221 bits (562), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 110/170 (64%), Positives = 125/170 (73%) Query: 81 HPVVTIEMDNGGIIKAELYPEVAPNTVNNFISLIQKGFYDGTIFHRVIPGFMIQXXXXXX 140 +P+VTI+M NG IIKAELYPEVAPNTVNNFISLI KGFYDG IFHRVIPGFMIQ Sbjct: 2 NPIVTIKMQNGDIIKAELYPEVAPNTVNNFISLINKGFYDGVIFHRVIPGFMIQGGDPDG 61 Query: 141 XXXXXXXYSIAGEFTANGFTNNLQHTQGVLSMARSQDMNSGGSQFFIMAAAYPSLDGQYA 200 YSI GEF+ANGF N+L+H++G+LSMAR+ NS GSQFFIM A P LDGQYA Sbjct: 62 TGMGGPGYSIKGEFSANGFKNDLKHSRGILSMARAMSPNSAGSQFFIMVADAPHLDGQYA 121 Query: 201 AFGKVTEGQDVVDAIVNLXXXXXXXXXXXXVMKKVTVDTLGVTYPEPEKV 250 +FGKVTEG +V D IVN VM+KVTV+T GV YPEPE+V Sbjct: 122 SFGKVTEGMEVADKIVNSKTDYSDRPYEDQVMEKVTVETFGVNYPEPEEV 171 >C4GBW2.1 C4GBW2_9FIRM Putative uncharacterized protein Length = 173 Score = 213 bits (541), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 102/172 (59%), Positives = 123/172 (71%) Query: 79 ASHPVVTIEMDNGGIIKAELYPEVAPNTVNNFISLIQKGFYDGTIFHRVIPGFMIQXXXX 138 A +P+VTIEM++G ++KAELYP++APNTVNNFISLIQKG+YDG IFHRVIPGFMIQ Sbjct: 2 AQNPIVTIEMEDGSVMKAELYPQIAPNTVNNFISLIQKGYYDGVIFHRVIPGFMIQGGDP 61 Query: 139 XXXXXXXXXYSIAGEFTANGFTNNLQHTQGVLSMARSQDMNSGGSQFFIMAAAYPSLDGQ 198 Y I GEF+ NGF+N+L+H++GVLSMAR+ +S GSQFFIM P LDG Sbjct: 62 QGTGTGGPGYCIPGEFSHNGFSNDLKHSKGVLSMARTMVPDSAGSQFFIMHETSPHLDGD 121 Query: 199 YAAFGKVTEGQDVVDAIVNLXXXXXXXXXXXXVMKKVTVDTLGVTYPEPEKV 250 YAAFG+V EG DV+DAI N MK+VTV+T GV YPEPEK Sbjct: 122 YAAFGQVIEGLDVIDAIANADRDWNDKPLSDQKMKRVTVETFGVDYPEPEKC 173 >B1DK90.1 B1DK90_9BACL Peptidyl-prolyl cis-trans isomerase EC=5.2.1.8 Length = 241 Score = 210 bits (535), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 106/177 (59%), Positives = 122/177 (68%), Gaps = 3/177 (1%) Query: 77 ATASHPVVTIEMDNGGIIKAELYPEVAPNTVNNFISLIQKGFYDGTIFHRVIPGFMIQXX 136 + HPVVT+EMDNG K ELYPE+APNTVNNF+SL++KGFYDGTIFHRVIPGFMIQ Sbjct: 63 GSDKHPVVTVEMDNGKSFKVELYPEIAPNTVNNFVSLVKKGFYDGTIFHRVIPGFMIQGG 122 Query: 137 XXXXXXXXXXXYSIAGEFTANGFTNNLQHTQGVLSMARSQDMNSGGSQFFIMAAAYPSLD 196 Y I GEF +NGF N+L HT+GV+SMARS D +S GSQFF+M A PSLD Sbjct: 123 DPEGTGMGGPGYGIKGEFMSNGFQNDLLHTRGVISMARSGDPDSAGSQFFVMVADAPSLD 182 Query: 197 GQYAAFGKVTEGQDVVDAIVNLXXXXXXXXX---XXXVMKKVTVDTLGVTYPEPEKV 250 G YAAFGKV+EG D VD IVN +KK TVDT G+T+ EPEKV Sbjct: 183 GDYAAFGKVSEGMDTVDEIVNQATEKTGEGSRPVKPMAIKKATVDTKGMTFAEPEKV 239 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,053,526,307 Number of extensions: 32151041 Number of successful extensions: 68531 Number of sequences better than 1.0e-05: 4076 Number of HSP's gapped: 63062 Number of HSP's successfully gapped: 4077 Length of query: 251 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 119 Effective length of database: 1,817,122,223 Effective search space: 216237544537 Effective search space used: 216237544537 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)