BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0391.0010.p (373 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZCU7.1 C0ZCU7_BREBN Putative multidrug resistance protein 441 e-122 C1PRA9.1 C1PRA9_ALIAC Arabinose efflux permease family protein 265 4e-69 B7DSD6.1 B7DSD6_9BACL Major facilitator superfamily MFS_1 265 4e-69 B3K7A9.1 B3K7A9_9BACI Major facilitator superfamily MFS_1 257 1e-66 B1D9K1.1 B1D9K1_9BACL Putative uncharacterized protein 228 6e-58 >C0ZCU7.1 C0ZCU7_BREBN Putative multidrug resistance protein Length = 409 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 219/352 (62%), Positives = 263/352 (74%) Query: 1 MRFSWKRNLIVLWVGVFFCSTAYXXXXXXXXXXXXDQLGVKNHLEIWSGVSFGITFLASA 60 M FSWKRNLIVLW+GVFFCSTAY LGV HLE WSG+SFGITFLASA Sbjct: 1 MEFSWKRNLIVLWIGVFFCSTAYSISIPFLPIFLHTSLGVNEHLEAWSGISFGITFLASA 60 Query: 61 LISPYWGSLADKYGRKPMLIRSGFSLAALYLINFFVHDPYVFIIVRIFQGLLAGFVPAAI 120 LISP+WGSLADKYGRKPMLIRSGFSL LY + + + DPY+F+++RIFQGLLAG+VPAAI Sbjct: 61 LISPFWGSLADKYGRKPMLIRSGFSLGLLYFLTYLITDPYLFLVLRIFQGLLAGYVPAAI 120 Query: 121 AMVATNTPEEKTGYALSIMSTAGATGSIIGPLIGGVVSFYSSNRSAFLFSAVIVLVSALI 180 A+VATNTPE+ GYAL IM+T+GATG IIGPL+GGVVS N AF+FS +VLV+ALI Sbjct: 121 ALVATNTPEKSVGYALGIMATSGATGGIIGPLVGGVVSHVWGNAEAFIFSGFVVLVAALI 180 Query: 181 ATFFAKEENYDRSAPRSHVRDDIREAAANPAFMTLLMLAGLATFSVMILEPLLPIYLLDM 240 ATFF KE N +RS RS VR+D+R A AN M++L ++ + T SVM+LEPLL +Y++ + Sbjct: 181 ATFFVKETNLNRSGSRSSVREDLRAAMANRPLMSILGMSLMVTISVMLLEPLLTVYVMQL 240 Query: 241 GISRNSASLSSGIVFSAVGIATVIMAPQWGRLGSRKXXXXXXXXXXXXXXXXXXXQYFVS 300 G S+ ASLSSGI+F+AVGIATVI APQWG+LGS Q+F + Sbjct: 241 GASQQDASLSSGIIFAAVGIATVIAAPQWGKLGSNIGYSKILFIGLMGGAVGNLLQFFFT 300 Query: 301 GYVEFAILRFAYGLFYAGVLPSVNAMIVQVIDPGFRGRAFGLNQAATQLATM 352 F ILRFAYGLF+A V PS+NAMIV+V +P FRGRAF LNQ++TQLATM Sbjct: 301 NLYGFGILRFAYGLFFAAVYPSINAMIVKVTEPEFRGRAFSLNQSSTQLATM 352 >C1PRA9.1 C1PRA9_ALIAC Arabinose efflux permease family protein Length = 407 Score = 265 bits (678), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 140/350 (40%), Positives = 207/350 (59%), Gaps = 3/350 (0%) Query: 4 SWKRNLIVLWVGVFFCSTAYXXXXXXXXXXXXDQLGVKNHLEIWSGVSFGITFLASALIS 63 +W+RNL+VLW+G S +Y ++GV H +IWSG + F+A A+ + Sbjct: 3 TWQRNLVVLWIGTLLTSASYSMVIPFLPLFLL-KIGVHQHTDIWSGALYSAAFVAGAIAA 61 Query: 64 PYWGSLADKYGRKPMLIRSGFSLAALYLINFFVHDPYVFIIVRIFQGLLAGFVPAAIAMV 123 PYWGSL D+YG+KPM++R+GF L +Y + FV P+ +++R QGLL+G++P ++A+V Sbjct: 62 PYWGSLGDRYGQKPMIVRAGFVLFVIYGLTAFVQHPWELLVLRTLQGLLSGYIPGSVALV 121 Query: 124 ATNTPEEKTGYALSIMSTAGATGSIIGPLIGGVVSFYSSNRSAFLFSAVIVLVSALIATF 183 +NTPE+K GYALS +S A + G I+GPL+GG ++ NR AF ++V+VL+S L+A Sbjct: 122 GSNTPEDKVGYALSTISAASSAGGIVGPLLGGTIARLFGNRVAFGSASVLVLISTLLALV 181 Query: 184 FAKEENYDRSAPRSHVRDDIREAAANPAFMTLLMLAGLATFSVMILEPLLPIYL--LDMG 241 F +E N R+ R V I A N +T L L + +FS+M +EP+L +Y+ LD Sbjct: 182 FVREMNKRRATSRPSVLGAIGGALHNKPLVTALSLNMVVSFSIMTIEPVLTLYIAELDPS 241 Query: 242 ISRNSASLSSGIVFSAVGIATVIMAPQWGRLGSRKXXXXXXXXXXXXXXXXXXXQYFVSG 301 S +AS +G+VFS GIA+V+ AP WG+ R Q Sbjct: 242 ASAKNASFLAGLVFSLAGIASVVFAPLWGKYADRIGFAKVLTIGLAGGAVWTFMQIPFHN 301 Query: 302 YVEFAILRFAYGLFYAGVLPSVNAMIVQVIDPGFRGRAFGLNQAATQLAT 351 + FA +RF YG F+ V P++N +IV+ + FRGRAFGLNQ A Q+ Sbjct: 302 IIAFAAVRFVYGAFFCAVYPAINGLIVRSTEATFRGRAFGLNQTANQIGN 351 >B7DSD6.1 B7DSD6_9BACL Major facilitator superfamily MFS_1 Length = 407 Score = 265 bits (678), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 141/347 (40%), Positives = 204/347 (58%), Gaps = 3/347 (0%) Query: 5 WKRNLIVLWVGVFFCSTAYXXXXXXXXXXXXDQLGVKNHLEIWSGVSFGITFLASALISP 64 W+RNL+VLW+G S +Y ++GV H +IWSG + F+A A+ +P Sbjct: 4 WQRNLVVLWIGTLLTSASYSMVIPFLPLFLL-KIGVHQHTDIWSGALYSAAFVAGAIAAP 62 Query: 65 YWGSLADKYGRKPMLIRSGFSLAALYLINFFVHDPYVFIIVRIFQGLLAGFVPAAIAMVA 124 YWGSL D+YG+KPM++R+GF L Y + FV P+ +I+R QGLL+G++P ++A+V Sbjct: 63 YWGSLGDRYGQKPMIVRAGFVLFVTYGLTAFVQHPWELLILRTLQGLLSGYIPGSVALVG 122 Query: 125 TNTPEEKTGYALSIMSTAGATGSIIGPLIGGVVSFYSSNRSAFLFSAVIVLVSALIATFF 184 +NTPE+K GYALS +S A + G I+GPL+GG ++ NR AF ++V+VL+S +A F Sbjct: 123 SNTPEDKVGYALSTISAASSAGGIVGPLLGGTIARLFGNRVAFGSASVLVLISTFLALIF 182 Query: 185 AKEENYDRSAPRSHVRDDIREAAANPAFMTLLMLAGLATFSVMILEPLLPIYL--LDMGI 242 KE N R+ R V I A N +T L L + +FS+M +EP+L +Y+ LD Sbjct: 183 VKEMNKKRATSRPSVVRAIGGALHNKPLLTALSLNMVVSFSIMTIEPVLTLYIAELDPSA 242 Query: 243 SRNSASLSSGIVFSAVGIATVIMAPQWGRLGSRKXXXXXXXXXXXXXXXXXXXQYFVSGY 302 S +AS +G+VFS GIA+V+ AP WG+ R Q Sbjct: 243 SAKNASFLAGLVFSLAGIASVVFAPLWGKYADRIGFAKVLTIGLAGGAVWTFMQIPFHNI 302 Query: 303 VEFAILRFAYGLFYAGVLPSVNAMIVQVIDPGFRGRAFGLNQAATQL 349 + FA +RF YG F+ V P++N +IV+ + FRGRAFGLNQ A Q+ Sbjct: 303 IAFAAVRFVYGAFFCAVYPAINGLIVRSTEATFRGRAFGLNQTANQI 349 >B3K7A9.1 B3K7A9_9BACI Major facilitator superfamily MFS_1 Length = 402 Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 152/349 (43%), Positives = 213/349 (61%), Gaps = 1/349 (0%) Query: 4 SWKRNLIVLWVGVFFCSTAYXXXXXXXXXXXXDQLGVKNHLEIWSGVSFGITFLASALIS 63 SWK+NL +LW G F S+++ + LGV H E+WSG+ F F A AL S Sbjct: 3 SWKKNLWILWFGSFIVSSSFSMVIPFLPLFLIE-LGVTKHTELWSGLLFSSAFFAGALSS 61 Query: 64 PYWGSLADKYGRKPMLIRSGFSLAALYLINFFVHDPYVFIIVRIFQGLLAGFVPAAIAMV 123 P+WG++ DKYGRKPM+IR+G L +Y++ FV + Y +I+R+ QGLL+GF+P AIA+V Sbjct: 62 PFWGAVGDKYGRKPMIIRAGLVLFVIYVLMAFVTNEYQVLILRLLQGLLSGFIPGAIAIV 121 Query: 124 ATNTPEEKTGYALSIMSTAGATGSIIGPLIGGVVSFYSSNRSAFLFSAVIVLVSALIATF 183 TNTPE+K GYALS+MSTA ATG I+GP+IGG ++ SNR AF + ++ + L+ F Sbjct: 122 GTNTPEKKVGYALSMMSTATATGGIMGPMIGGTLASLFSNRMAFGLAGMLCFAATLLVIF 181 Query: 184 FAKEENYDRSAPRSHVRDDIREAAANPAFMTLLMLAGLATFSVMILEPLLPIYLLDMGIS 243 + KEE + S R V + + A N A MT+LML L FSVM +EP+LP+Y+ +G S Sbjct: 182 WVKEEKFVPSKERVSVMNTFKVAGHNKALMTVLMLTVLTQFSVMTIEPVLPLYIAQIGGS 241 Query: 244 RNSASLSSGIVFSAVGIATVIMAPQWGRLGSRKXXXXXXXXXXXXXXXXXXXQYFVSGYV 303 + S+ +G VFS VGIA+++ A +WGRL + Q S Sbjct: 242 SSHTSMIAGFVFSIVGIASILFAARWGRLADKIGFQKVLLIGLLASGIGSLAQILFSNIW 301 Query: 304 EFAILRFAYGLFYAGVLPSVNAMIVQVIDPGFRGRAFGLNQAATQLATM 352 F+ +RFAYG F+ V P++N ++V+ FRGRAF LNQ A Q+ M Sbjct: 302 AFSAIRFAYGAFFCAVFPALNGLVVKHTPSEFRGRAFSLNQTANQIGGM 350 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 1/143 (0%) Query: 39 GVKNHLEIWSGVSFGITFLASALISPYWGSLADKYGRKPMLIRSGFSLAALYLINFFVHD 98 G +H + +G F I +AS L + WG LADK G + +L+ + L + Sbjct: 240 GSSSHTSMIAGFVFSIVGIASILFAARWGRLADKIGFQKVLLIGLLASGIGSLAQILFSN 299 Query: 99 PYVFIIVRIFQG-LLAGFVPAAIAMVATNTPEEKTGYALSIMSTAGATGSIIGPLIGGVV 157 + F +R G PA +V +TP E G A S+ TA G + GPL GG++ Sbjct: 300 IWAFSAIRFAYGAFFCAVFPALNGLVVKHTPSEFRGRAFSLNQTANQIGGMAGPLAGGMI 359 Query: 158 SFYSSNRSAFLFSAVIVLVSALI 180 S + S FL + V++L++ I Sbjct: 360 SGIFNIHSVFLMTGVLMLITTAI 382 >B1D9K1.1 B1D9K1_9BACL Putative uncharacterized protein Length = 189 Score = 228 bits (582), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 108/146 (73%), Positives = 123/146 (84%) Query: 3 FSWKRNLIVLWVGVFFCSTAYXXXXXXXXXXXXDQLGVKNHLEIWSGVSFGITFLASALI 62 +SWKRNLIVLW+GVFFCSTAY + LGV NHLE+WSG +FGITFLASALI Sbjct: 5 YSWKRNLIVLWIGVFFCSTAYSVSIPFIPLFLHNDLGVNNHLEMWSGFAFGITFLASALI 64 Query: 63 SPYWGSLADKYGRKPMLIRSGFSLAALYLINFFVHDPYVFIIVRIFQGLLAGFVPAAIAM 122 +PYWGSLADKYGRKPMLIRSGFSLAALY I FFVHDPYVF+I+R+FQGLLAG+VPAAIA+ Sbjct: 65 APYWGSLADKYGRKPMLIRSGFSLAALYFITFFVHDPYVFLILRVFQGLLAGYVPAAIAL 124 Query: 123 VATNTPEEKTGYALSIMSTAGATGSI 148 VATNTPEEK+GYAL IM+T ++ Sbjct: 125 VATNTPEEKSGYALGIMATPAQRAAL 150 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.140 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,811,101,662 Number of extensions: 64048602 Number of successful extensions: 312637 Number of sequences better than 1.0e-05: 2545 Number of HSP's gapped: 318048 Number of HSP's successfully gapped: 2763 Length of query: 373 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 236 Effective length of database: 1,770,017,148 Effective search space: 417724046928 Effective search space used: 417724046928 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 132 (55.5 bits)