BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0391.0003.p
         (346 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K9W0.1 B3K9W0_9BACI Putative uncharacterized protein                263   2e-68
B1DH06.1 B1DH06_9BACL Putative uncharacterized protein                194   8e-48

>B3K9W0.1 B3K9W0_9BACI Putative uncharacterized protein
          Length = 317

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 144/312 (46%), Positives = 183/312 (58%), Gaps = 7/312 (2%)

Query: 37  MDWLHDYDKELRLVFQDCSSVISGFPDSLRIQGMAYLEQFNVFSTGSHKNYISYLLPFWL 96
           M+W   ++ +L   F  C + +S FP  L   G++YL +F+VF   S KNYI YLLPFW+
Sbjct: 1   MNWFKPFEDDLAAAFSACEARLSEFPAPLNQIGLSYLRKFDVFEQDSSKNYICYLLPFWM 60

Query: 97  RDGYGLTEAEARGLSAGNIFCMLYFFIQDDLMDS--DNSAS----RMLPLANLLYVEFLN 150
           ++   L     R LS  NI  MLY+FIQDD+MDS  D  +S      L LANLLY EFL 
Sbjct: 61  KERTALPAEIYRDLSTANIIGMLYYFIQDDIMDSPHDGQSSIDPKHHLALANLLYYEFLT 120

Query: 151 KYRPLFPPESLFWLCFNRYILEWAESVAGEAHGDYFRNDRLKISHKASPLKLTSTAILLH 210
            Y+P FP  S FW     Y  EW+E V  E   DYF++DR  ++ KA+P+KL STA LL 
Sbjct: 121 SYQPYFPANSEFWSYLKHYTHEWSEGVIHETREDYFKHDRAMVAKKAAPVKLGSTAALLL 180

Query: 211 TGNASLIPEAEDILHTVLLTLQMLDDYEDWEQDLAEGSYNCLLSLAGHHTGIDQVA-LTK 269
           +  A LIP   D+++ VLLTLQM+DD+ DW+QDLA+GSYNCLLSL     G  Q A LT 
Sbjct: 181 SDQADLIPRTNDVMNHVLLTLQMMDDWTDWKQDLADGSYNCLLSLIKSERGQPQDAVLTI 240

Query: 270 AQVKDYIFTKGGLAAYAGTALDNHKKLENCRLNAPHLIAFHQFMAGNLQQMAAAIEAEKX 329
           ++V++ IF    L  YA  A   H  L +  + APHLI+FHQ M   LQ  A  IE  K 
Sbjct: 241 SEVQEAIFINNMLKPYAEIAAATHAHLLSVDIEAPHLISFHQTMVDELQNEANHIENSKK 300

Query: 330 XXXXXXXXYWLS 341
                   Y LS
Sbjct: 301 TLSFGGLNYHLS 312


>B1DH06.1 B1DH06_9BACL Putative uncharacterized protein
          Length = 310

 Score =  194 bits (494), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 161/306 (52%), Gaps = 2/306 (0%)

Query: 37  MDWLHDYDKELRLVFQDCSSVISGFPDSLRIQGMAYLEQFNVFSTGSHKNYISYLLPFWL 96
           M++   Y +EL+LVF +    I+ FP+     G+AYL +F+VF   S KNYI YLLP+W+
Sbjct: 1   MNYFDPYRQELQLVFSEAKQRIANFPEPFNEAGLAYLRKFDVFERESSKNYICYLLPYWI 60

Query: 97  RDGYGLTEAEARGLSAGNIFCMLYFFIQDDLMDSDNSA-SRMLPLANLLYVEFLNKYRPL 155
            +   +   + R LS  N+F MLY+F+QDD+MD   +A    L LA+L + E     R L
Sbjct: 61  NESASIPIVQCRMLSLSNVFSMLYYFLQDDVMDETPAAWKEQLALAHLCHFEMEAILREL 120

Query: 156 FPPESLFWLCFNRYILEWAESVAGEAHGDYFRNDRLKISHKASPLKLTSTAILLHTGNAS 215
           F   S FW     Y+ EWA +V  E   DYF  D ++++ KASPLKL ST +LL      
Sbjct: 121 FAANSPFWGYRQHYMNEWASAVVHEDKHDYFMTDIVQVAKKASPLKLASTGVLLLADQPE 180

Query: 216 LIPEAEDILHTVLLTLQMLDDYEDWEQDLAEGSYNCLLSLAGHHTGIDQVALTKAQVKDY 275
            I + E+++   L+ LQM DD  DWE DL+EG+YNCLLS+       D   L   + + Y
Sbjct: 181 KIADVEELVDYSLVLLQMADDLTDWEDDLSEGNYNCLLSMIHAKRQSDH-PLQAEEAESY 239

Query: 276 IFTKGGLAAYAGTALDNHKKLENCRLNAPHLIAFHQFMAGNLQQMAAAIEAEKXXXXXXX 335
           I+ +  +  Y   + +    L N ++    L++F  F    +      +E ++       
Sbjct: 240 IYDRSLMTEYCDRSKEVLDILNNSQIGISTLLSFSHFTYEGIAGFTNRVENKRRTLLSGG 299

Query: 336 XXYWLS 341
             Y LS
Sbjct: 300 FDYILS 305


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 2,042,150,193
Number of extensions: 83722613
Number of successful extensions: 157968
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 157965
Number of HSP's successfully gapped: 2
Length of query: 346
Length of database: 3,060,696,203
Length adjustment: 136
Effective length of query: 210
Effective length of database: 1,779,438,163
Effective search space: 373682014230
Effective search space used: 373682014230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)