BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0391.0001.p (360 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D8H5.1 B1D8H5_9BACL Oxidoreductase domain protein 360 8e-98 A0K179.1 A0K179_ARTS2 Oxidoreductase domain protein 341 8e-92 B0RAK3.1 B0RAK3_CLAMS Putative oxidoreductase 322 3e-86 B1DGQ8.1 B1DGQ8_9BACL Oxidoreductase domain protein 318 7e-85 A5CN80.1 A5CN80_CLAM3 Putative oxidoreductase 314 8e-84 >B1D8H5.1 B1D8H5_9BACL Oxidoreductase domain protein Length = 359 Score = 360 bits (925), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 175/347 (50%), Positives = 234/347 (67%) Query: 12 GGGWRAEFYLRIARELPEQFAVGAMFVRNKDKAEALSRTWGVRVYTSIGDFISAASYSFA 71 GGGWR+EF+LRIA+ LPE+F V + VR+++K +A + WGV + +I + A S +F Sbjct: 10 GGGWRSEFFLRIAKALPERFDVAGVVVRDEEKGKAFEQAWGVPTFRTIQAMLDAVSLAFV 69 Query: 72 VISLKKDISTAYVIRLAEAGIPVLAETPPAPDLARLKELWNRVGGSATIQIAEQYMFQPM 131 V+S+ + ++ ++ L + VL ETPPA L L L+ +VGG IQ+AEQY FQP Sbjct: 70 VVSVPRKVAPGVMLELTSRDVAVLCETPPAEKLEDLIALYRQVGGKGRIQVAEQYAFQPN 129 Query: 132 HAARIALADSGRLGTVSQAQISAAHGYHGISLIRRLLGTGFGNVSIRAQQFRSAIIEGPQ 191 HA R+A+ SG+LG V+QAQ+SAAH YHGISL+RR LG GF N SIRA F S I+EGP Sbjct: 130 HAGRLAIVRSGKLGQVTQAQVSAAHDYHGISLMRRYLGIGFENASIRAAAFASPIMEGPG 189 Query: 192 RSGPPSAEARVQSVQTLAVLDFGDKLGVFDFTGDQYFSWIRGSRILVRGDRGELMNDDVS 251 RSGPP+ QS Q +A DFG K GV+DFTGDQYFSWIR R+LVRG+RGE+ N DV Sbjct: 190 RSGPPAESRLQQSEQVMASFDFGGKYGVYDFTGDQYFSWIRSPRVLVRGERGEINNFDVR 249 Query: 252 WLQAYDTPLYGKLRRIDAGHGGNLEGFYLKGIMMDGEWLYRNPYAPARLSEDEIAVAESL 311 +L + TP++ ++ R AG GNLEG+YLK + + + +Y+N APARL++DEIAVA L Sbjct: 250 YLLDHLTPVHLRMTRQQAGLDGNLEGYYLKSLHLGEQAVYKNNTAPARLTDDEIAVAACL 309 Query: 312 VRMQRHVGGGPSFYSLAEGSQDQYXXXXXXXXXXSGETVVSQRQPWA 358 +M + GG FYSLAE QD Y +GETV+++ Q W+ Sbjct: 310 EKMGVYAAGGEDFYSLAEACQDHYLALMMKQSLQTGETVMTETQCWS 356 >A0K179.1 A0K179_ARTS2 Oxidoreductase domain protein Length = 376 Score = 341 bits (874), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 165/348 (47%), Positives = 226/348 (64%) Query: 12 GGGWRAEFYLRIARELPEQFAVGAMFVRNKDKAEALSRTWGVRVYTSIGDFISAASYSFA 71 GGG+RA F+LR+A+ LP F V + R ++ A+ R WGV Y ++ + + A+ FA Sbjct: 28 GGGYRAGFFLRVAQALPHLFRVCGVVARREESRTAVEREWGVCAYPTLAELLDEATPDFA 87 Query: 72 VISLKKDISTAYVIRLAEAGIPVLAETPPAPDLARLKELWNRVGGSATIQIAEQYMFQPM 131 V+S+ + + A G+PVL ETPPAPDL L L+ V A IQ+AEQY +P+ Sbjct: 88 VVSVSAGAAPGVIADAASRGLPVLTETPPAPDLEGLLSLYRLVEDGARIQVAEQYHLEPL 147 Query: 132 HAARIALADSGRLGTVSQAQISAAHGYHGISLIRRLLGTGFGNVSIRAQQFRSAIIEGPQ 191 +A+IA+A SGRLG+V++A S HGYHG+S++RRLLG GF N + A +FRS + GP Sbjct: 148 LSAQIAIARSGRLGSVAEAFASVCHGYHGVSILRRLLGIGFENAEVTAHEFRSRMKAGPD 207 Query: 192 RSGPPSAEARVQSVQTLAVLDFGDKLGVFDFTGDQYFSWIRGSRILVRGDRGELMNDDVS 251 RSG P + + A LDFG +LGVFDFT DQY SWIR +LVRGDRGEL + ++ Sbjct: 208 RSGDPQEDHLIDEAHVSARLDFGGRLGVFDFTTDQYRSWIRSPHVLVRGDRGELRDTELR 267 Query: 252 WLQAYDTPLYGKLRRIDAGHGGNLEGFYLKGIMMDGEWLYRNPYAPARLSEDEIAVAESL 311 +++ + TP+ ++RRI AGH GN EG +L+G++ G WLYRNP+APARL++DE++VA L Sbjct: 268 YVEDFRTPMRSEIRRIGAGHAGNHEGMFLRGLVEGGNWLYRNPFAPARLADDELSVAALL 327 Query: 312 VRMQRHVGGGPSFYSLAEGSQDQYXXXXXXXXXXSGETVVSQRQPWAA 359 M +V GGP YSLAE DQY SGE + ++ QPWAA Sbjct: 328 QGMADYVHGGPEVYSLAEACHDQYLALTIQQSVESGEGIRTKTQPWAA 375 >B0RAK3.1 B0RAK3_CLAMS Putative oxidoreductase Length = 364 Score = 322 bits (826), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 164/356 (46%), Positives = 230/356 (64%), Gaps = 2/356 (0%) Query: 3 KIIFGXXXXGGGWRAEFYLRIARELPEQFAVGAMFVRNKDKAEALSRTWGVRVYTSIGDF 62 +I FG G GWR+ F+LRIAR LPE+FAV + R+ D AL WG+R + + + Sbjct: 10 QIRFGIV--GSGWRSAFFLRIARALPERFAVSGLVTRSADTGRALEEEWGIRTFRTAAEL 67 Query: 63 ISAASYSFAVISLKKDISTAYVIRLAEAGIPVLAETPPAPDLARLKELWNRVGGSATIQI 122 ++A + SF V+S+ + + + L + G+ VL ETPP +A L+ L V A I++ Sbjct: 68 LAAEAPSFVVVSVPRTAAPDVIADLVDRGVAVLTETPPGETVADLERLDALVKQGARIEV 127 Query: 123 AEQYMFQPMHAARIALADSGRLGTVSQAQISAAHGYHGISLIRRLLGTGFGNVSIRAQQF 182 AEQY P+ AA++A+A GRLG +SQA ++ H YHG+ ++RR LG GF + +I AQ+F Sbjct: 128 AEQYPLSPLLAAQLAIAAGGRLGRISQATVAQCHDYHGVRVMRRALGIGFEDATITAQRF 187 Query: 183 RSAIIEGPQRSGPPSAEARVQSVQTLAVLDFGDKLGVFDFTGDQYFSWIRGSRILVRGDR 242 S ++ GP R G P E V +VQT A DFGD+LGV+DF QYFSWIR +R+LVRG+R Sbjct: 188 SSPLVAGPDRDGDPVREEVVTAVQTTARFDFGDRLGVYDFADRQYFSWIRRNRLLVRGER 247 Query: 243 GELMNDDVSWLQAYDTPLYGKLRRIDAGHGGNLEGFYLKGIMMDGEWLYRNPYAPARLSE 302 GE++++ VSWL TP + + RI+ G GGNLEG +L+G+++ EW+Y NP+AP RL++ Sbjct: 248 GEIVDEHVSWLLDATTPTWADITRIETGQGGNLEGHHLRGLLLGSEWVYENPFAPGRLAD 307 Query: 303 DEIAVAESLVRMQRHVGGGPSFYSLAEGSQDQYXXXXXXXXXXSGETVVSQRQPWA 358 DEIAVA+ LV M H GGPS SLAE SQD + +G+ V S R+ WA Sbjct: 308 DEIAVAQCLVEMHAHAAGGPSTNSLAEASQDHHLALLMHEAATTGQPVRSTRRAWA 363 >B1DGQ8.1 B1DGQ8_9BACL Oxidoreductase domain protein Length = 362 Score = 318 bits (814), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 157/348 (45%), Positives = 220/348 (63%), Gaps = 1/348 (0%) Query: 12 GGGWRAEFYLRIARELPEQFAVGAMFVRNKDKAEALSRTWGVRVYTSIGDFISAASYSFA 71 GG +RA++YLRIA+ LPE+F V M +R++ K + W V Y ++ +S F Sbjct: 12 GGSFRAQYYLRIAQALPERFRVSGMVIRDEAKGREMEELWKVTTYRTLDQLLSVEQPDFV 71 Query: 72 VISLKKDISTAYVIRLAEAGIPVLAETPPAPDLARLKELWNRVGGS-ATIQIAEQYMFQP 130 V+S+ + Y+++L+E GIPVL ETPPA DL L +L ++ A IQ+AEQY + P Sbjct: 72 VLSIHASAAIDYMLQLSERGIPVLTETPPASDLEGLLQLHEKLTRQGARIQVAEQYQYHP 131 Query: 131 MHAARIALADSGRLGTVSQAQISAAHGYHGISLIRRLLGTGFGNVSIRAQQFRSAIIEGP 190 + AR + SG+LG V+Q +S +H YH +SLIR+LLG F V I+ +F S + GP Sbjct: 132 IQEARHKIIMSGQLGNVNQVTVSISHFYHAVSLIRKLLGVRFEEVRIKGMRFESDWVAGP 191 Query: 191 QRSGPPSAEARVQSVQTLAVLDFGDKLGVFDFTGDQYFSWIRGSRILVRGDRGELMNDDV 250 RSGPP+ + ++S + LA LDFG KLG++DFT DQ+ SW R + + VRG+RGE+ ++ + Sbjct: 192 NRSGPPTEDKLIKSERDLAWLDFGGKLGIYDFTKDQHRSWTRSNHLCVRGERGEIFDNRI 251 Query: 251 SWLQAYDTPLYGKLRRIDAGHGGNLEGFYLKGIMMDGEWLYRNPYAPARLSEDEIAVAES 310 S + T + +L+RI+ G N EG++LKGIM W+Y NPY PARL +DEIA+A Sbjct: 252 SIQDSSCTQIQMELKRINKGEYENAEGYFLKGIMAGERWVYENPYMPARLYDDEIAIAVC 311 Query: 311 LVRMQRHVGGGPSFYSLAEGSQDQYXXXXXXXXXXSGETVVSQRQPWA 358 L +M + GGP FY L + SQDQY SGETVVS RQPWA Sbjct: 312 LKKMAVYAEGGPGFYGLPDASQDQYIGLLIEQAIRSGETVVSIRQPWA 359 >A5CN80.1 A5CN80_CLAM3 Putative oxidoreductase Length = 364 Score = 314 bits (805), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 156/347 (44%), Positives = 226/347 (65%) Query: 12 GGGWRAEFYLRIARELPEQFAVGAMFVRNKDKAEALSRTWGVRVYTSIGDFISAASYSFA 71 G GWR+ F+LRIAR LPE+FAV + R+ + AL + WG+R + + + ++A + SFA Sbjct: 17 GSGWRSAFFLRIARALPERFAVTGLVTRSAETGRALEKEWGIRTFRTAAELLAAEAPSFA 76 Query: 72 VISLKKDISTAYVIRLAEAGIPVLAETPPAPDLARLKELWNRVGGSATIQIAEQYMFQPM 131 V+S+ + + + L + G+ VL ETPP +A L+ L V A I++AEQY P+ Sbjct: 77 VVSVPRTAAPDVIADLVDRGVAVLTETPPGATVADLERLDALVRQGARIEVAEQYPLSPL 136 Query: 132 HAARIALADSGRLGTVSQAQISAAHGYHGISLIRRLLGTGFGNVSIRAQQFRSAIIEGPQ 191 AA++A+A GRLG +SQA ++ H YHG+ ++RR LG GF + +I A +F S I+ GP Sbjct: 137 LAAQLAIAAGGRLGRISQATVAQCHDYHGVRVMRRALGIGFEDATITAARFSSPIVAGPD 196 Query: 192 RSGPPSAEARVQSVQTLAVLDFGDKLGVFDFTGDQYFSWIRGSRILVRGDRGELMNDDVS 251 R G P E V + QT A DFGD+LGV+DF+ QYFSWIR +R+LVRG+RGE++++ VS Sbjct: 197 RDGDPVREEIVTAEQTTARFDFGDRLGVYDFSDRQYFSWIRRNRLLVRGERGEIVDEHVS 256 Query: 252 WLQAYDTPLYGKLRRIDAGHGGNLEGFYLKGIMMDGEWLYRNPYAPARLSEDEIAVAESL 311 WL TP + + R++ G GGNLEG +L+G+++ EW++ NP+AP RL++DEIA+A+ L Sbjct: 257 WLLDATTPTWADITRVETGQGGNLEGHHLRGLLLGSEWIHENPFAPGRLADDEIAIAQCL 316 Query: 312 VRMQRHVGGGPSFYSLAEGSQDQYXXXXXXXXXXSGETVVSQRQPWA 358 V M H GGPS LAE SQD + +G+ V S R+ WA Sbjct: 317 VEMHAHAAGGPSTNPLAEASQDHHLALLMHEAAATGKPVRSTRRAWA 363 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,095,653,610 Number of extensions: 85743211 Number of successful extensions: 198272 Number of sequences better than 1.0e-05: 16 Number of HSP's gapped: 198285 Number of HSP's successfully gapped: 16 Length of query: 360 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 223 Effective length of database: 1,770,017,148 Effective search space: 394713824004 Effective search space used: 394713824004 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)