BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0389.0012.p (436 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q59197.1 Q59197_BACCI Aspartate aminotransferase EC=2.6.1.1 714 0.0 B3KEH0.1 B3KEH0_9BACI Aminotransferase class I and II 704 0.0 B1D7A4.1 B1D7A4_9BACL Aminotransferase class I and II 654 0.0 C0ZE48.1 C0ZE48_BREBN Putative aspartate aminotransferase 627 e-178 Q24WK9.1 Q24WK9_DESHY Putative uncharacterized protein 561 e-158 >Q59197.1 Q59197_BACCI Aspartate aminotransferase EC=2.6.1.1 Length = 432 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/433 (78%), Positives = 383/433 (88%), Gaps = 1/433 (0%) Query: 4 MNPLAGQLNDSIKAGNEHVYDMLSNLGKALYYPKEGILSQSXXXXXXXXXXXXTIGIATE 63 MNPLAGQLN+ ++AGN HV+DMLS LGK LY+PKEGILSQS TIGIATE Sbjct: 1 MNPLAGQLNEKLQAGNPHVFDMLSTLGKELYFPKEGILSQSAEAAAHAKKYNATIGIATE 60 Query: 64 HGVPMHLGVIQDKLSAYSPKDLYGYAPPAGKPELRTLWREKMLRETPSLEGKSFGNPIAT 123 G+PMHLGVIQ+KLSA++PKDLY YAPPAGKPELR+LWR+KML E PSL+GKSFGNPIAT Sbjct: 61 GGIPMHLGVIQEKLSAFAPKDLYPYAPPAGKPELRSLWRDKMLEENPSLQGKSFGNPIAT 120 Query: 124 NALTHGLSIVADLFADQGDAVIYPDKNWENYELTFGVRRLSDTVNYPLFTEDMSFNSEGL 183 NALTHGLSIVADLF D+GDAVIYPDKNWENY+LTFGVRR VN+PLFT +M+FN+ GL Sbjct: 121 NALTHGLSIVADLFVDEGDAVIYPDKNWENYDLTFGVRRHGVNVNFPLFTSEMTFNAAGL 180 Query: 184 LDALLAQKERGKAIVLLNFPNNPTGYTPGIKEGEAIVAAILRAAEEGINVVVVSDDAYFG 243 DALLAQK++GKA+V+LNFPNNPTGYTPG EG+AIVAAI AAE GINVVVV+DDAYFG Sbjct: 181 RDALLAQKDKGKAVVILNFPNNPTGYTPGAAEGDAIVAAIKDAAEAGINVVVVTDDAYFG 240 Query: 244 LFFEDSLKESLFGRLANLHPRVLAVKIDGATKEEFVWGFRVGFITYASDSKEVLAALEQK 303 LFFEDSLKESLFGRLA+LHPRVLAVK+DGATKEEFVWGFRVGFITYAS++K+VL ALEQK Sbjct: 241 LFFEDSLKESLFGRLADLHPRVLAVKVDGATKEEFVWGFRVGFITYASENKDVLDALEQK 300 Query: 304 TMGIIRATISSGPHPSQTFVLDALKSPEFAEQKEEKFQIMKGRANKVKALLDSGKYGDEV 363 T+GIIRATISSGPHPSQTFVLDALK+P F EQKEEK QIMKGRANKVK +LDSGKY E Sbjct: 301 TLGIIRATISSGPHPSQTFVLDALKAPGFKEQKEEKLQIMKGRANKVKDILDSGKY-SEA 359 Query: 364 WTYYPFNSGYFMCLKLHTVPADALRLHLIHNYGLGTIALGETDLRVAFSCIEEDQLEDLF 423 W YYPFNSGYFMCLKL TV A+ALR HLIH YG+GTIALGE DLR+AFSCIEE LEDLF Sbjct: 360 WDYYPFNSGYFMCLKLKTVQAEALRSHLIHEYGIGTIALGEHDLRIAFSCIEEPYLEDLF 419 Query: 424 DMVYAGIRDLEKA 436 D+++ G++DL++A Sbjct: 420 DLIHQGVQDLQQA 432 >B3KEH0.1 B3KEH0_9BACI Aminotransferase class I and II Length = 432 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/433 (77%), Positives = 377/433 (87%), Gaps = 1/433 (0%) Query: 4 MNPLAGQLNDSIKAGNEHVYDMLSNLGKALYYPKEGILSQSXXXXXXXXXXXXTIGIATE 63 MNPL GQLN ++AGN HVYDMLS LG+ +Y+PKEGILSQS TIGIATE Sbjct: 1 MNPLVGQLNGKMQAGNPHVYDMLSTLGREIYFPKEGILSQSAEATSHAKKYNATIGIATE 60 Query: 64 HGVPMHLGVIQDKLSAYSPKDLYGYAPPAGKPELRTLWREKMLRETPSLEGKSFGNPIAT 123 G+PMHLGVIQDKLSAY PKDLY YAPPAGKPELR++WR KM++E PSLEGKSF NPI T Sbjct: 61 GGIPMHLGVIQDKLSAYQPKDLYPYAPPAGKPELRSVWRNKMIQENPSLEGKSFSNPIVT 120 Query: 124 NALTHGLSIVADLFADQGDAVIYPDKNWENYELTFGVRRLSDTVNYPLFTEDMSFNSEGL 183 NALTHGLSIVADLF D+GDAVIYPDKNWENYELTFG+RR V YPLFT+DM FN++GL Sbjct: 121 NALTHGLSIVADLFVDEGDAVIYPDKNWENYELTFGIRRHGIHVTYPLFTDDMKFNADGL 180 Query: 184 LDALLAQKERGKAIVLLNFPNNPTGYTPGIKEGEAIVAAILRAAEEGINVVVVSDDAYFG 243 ALL+QK++GKA+VLLNFPNNPTGYTPG +EG AIV+AI AAE G+NVVVV+DDAYFG Sbjct: 181 RQALLSQKDKGKAVVLLNFPNNPTGYTPGAEEGAAIVSAIQEAAEAGMNVVVVTDDAYFG 240 Query: 244 LFFEDSLKESLFGRLANLHPRVLAVKIDGATKEEFVWGFRVGFITYASDSKEVLAALEQK 303 LFFEDSLKESLFGRLA LHPRVL VK+DGATKEEFVWGFRVGFITYA++ K+VL ALEQK Sbjct: 241 LFFEDSLKESLFGRLAGLHPRVLPVKVDGATKEEFVWGFRVGFITYAAEDKDVLDALEQK 300 Query: 304 TMGIIRATISSGPHPSQTFVLDALKSPEFAEQKEEKFQIMKGRANKVKALLDSGKYGDEV 363 T+GIIRATISS HPSQTFVL+ALKSPEF EQKEEKF IMKGRANKVK++LDSGKYGD V Sbjct: 301 TLGIIRATISSASHPSQTFVLEALKSPEFHEQKEEKFVIMKGRANKVKSILDSGKYGD-V 359 Query: 364 WTYYPFNSGYFMCLKLHTVPADALRLHLIHNYGLGTIALGETDLRVAFSCIEEDQLEDLF 423 W YYPFNSGYFMCLKL+TV A+ LR HLIH YG+GTIALGE DLR+AFSCI+E+ LEDLF Sbjct: 360 WEYYPFNSGYFMCLKLNTVNAEELRSHLIHEYGVGTIALGEHDLRIAFSCIDEEYLEDLF 419 Query: 424 DMVYAGIRDLEKA 436 D+VY GI+DL+KA Sbjct: 420 DLVYKGIQDLQKA 432 >B1D7A4.1 B1D7A4_9BACL Aminotransferase class I and II Length = 434 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/433 (72%), Positives = 363/433 (83%), Gaps = 1/433 (0%) Query: 1 MKLMNPLAGQLNDSIKAGNEHVYDMLSNLGKALYYPKEGILSQSXXXXXXXXXXXXTIGI 60 MK MNPLA QLN+++KA + +VYDMLS LGKA+Y+PKEGILSQS TIGI Sbjct: 1 MKSMNPLAQQLNETLKAESPNVYDMLSALGKAIYFPKEGILSQSAEAKAKAKKFNATIGI 60 Query: 61 ATEHGVPMHLGVIQDKLSAYSPKDLYGYAPPAGKPELRTLWREKMLRETPSLEGKSFGNP 120 A E+G PMHL VIQD LS+Y PKD+Y YAPPAGKPELR+ WR KM++E PSLEGK F NP Sbjct: 61 AIENGQPMHLKVIQDTLSSYDPKDIYEYAPPAGKPELRSAWRTKMVKENPSLEGKKFSNP 120 Query: 121 IATNALTHGLSIVADLFADQGDAVIYPDKNWENYELTFGVRRLSDTVNYPLFTEDMSFNS 180 +ATNALTHGLSIVADLFAD GDAVI P+KNWENYELTF +RR ++ V YPL+ ED FNS Sbjct: 121 VATNALTHGLSIVADLFADVGDAVIIPNKNWENYELTFNIRRGAEIVEYPLYNEDYRFNS 180 Query: 181 EGLLDALLAQKERGKAIVLLNFPNNPTGYTPGIKEGEAIVAAILRAAEEGINVVVVSDDA 240 GL +ALLAQK++GKAIV+LNFPNNPTGY+PG +EG+ IVAAI AAE GINVV V+DDA Sbjct: 181 AGLREALLAQKDKGKAIVILNFPNNPTGYSPGPQEGDEIVAAIRDAAEAGINVVAVTDDA 240 Query: 241 YFGLFFEDSLKESLFGRLANLHPRVLAVKIDGATKEEFVWGFRVGFITYASDSKEVLAAL 300 YFGLFFEDSL ESLFG+LA+LHPRVLAVK+DGATKEE+VWGFRVGFITYA+ S + LAAL Sbjct: 241 YFGLFFEDSLHESLFGKLADLHPRVLAVKVDGATKEEYVWGFRVGFITYANPSDKALAAL 300 Query: 301 EQKTMGIIRATISSGPHPSQTFVLDALKSPEFAEQKEEKFQIMKGRANKVKALLDSGKYG 360 EQKTMGIIRATISSGPHPSQTFVL AL+S EF EQK EK+++MK RANKVK LLDSG+YG Sbjct: 301 EQKTMGIIRATISSGPHPSQTFVLRALQSAEFDEQKAEKYEVMKKRANKVKDLLDSGRYG 360 Query: 361 DEVWTYYPFNSGYFMCLKLHTVPADALRLHLIHNYGLGTIALGETDLRVAFSCIEEDQLE 420 D VW+YYPFNSGYFMCLKL V A+ +R L+ YG+GTIALGETDLRVAFSCIEE LE Sbjct: 361 D-VWSYYPFNSGYFMCLKLKGVAAEEVRTRLLDEYGIGTIALGETDLRVAFSCIEEPNLE 419 Query: 421 DLFDMVYAGIRDL 433 +LFD +Y + +L Sbjct: 420 ELFDTIYKAVTEL 432 >C0ZE48.1 C0ZE48_BREBN Putative aspartate aminotransferase Length = 435 Score = 627 bits (1618), Expect = e-178, Method: Compositional matrix adjust. Identities = 291/433 (67%), Positives = 354/433 (81%), Gaps = 1/433 (0%) Query: 4 MNPLAGQLNDSIKAGNEHVYDMLSNLGKALYYPKEGILSQSXXXXXXXXXXXXTIGIATE 63 M+ LA LN++I+ N HVY+MLS++ K +Y+PKEGILSQS TIGIA E Sbjct: 1 MHSLASTLNETIQRENPHVYEMLSDIAKLIYFPKEGILSQSAEAKAKAKKYNATIGIALE 60 Query: 64 HGVPMHLGVIQDKLSAYSPKDLYGYAPPAGKPELRTLWREKMLRETPSLEGKSFGNPIAT 123 +G PMHL VIQD LSAY PKD+Y YAPPAGKPELR WR+KM+ E PSL +F NPI T Sbjct: 61 NGQPMHLKVIQDNLSAYQPKDIYEYAPPAGKPELRAAWRKKMIEEQPSLANHTFSNPIVT 120 Query: 124 NALTHGLSIVADLFADQGDAVIYPDKNWENYELTFGVRRLSDTVNYPLFTEDMSFNSEGL 183 NALTHGLSIV+DLFAD GD+VI PDKNWENYELTF +RR ++ V YPL+ ++M FN+ L Sbjct: 121 NALTHGLSIVSDLFADSGDSVIIPDKNWENYELTFSIRRGAEMVYYPLYNDEMKFNAAAL 180 Query: 184 LDALLAQKERGKAIVLLNFPNNPTGYTPGIKEGEAIVAAILRAAEEGINVVVVSDDAYFG 243 DA+LAQK++GKAIV+LNFPNNPTGYTPG +EG+ I+AA+ AE GIN+V V+DDAYFG Sbjct: 181 RDAILAQKDKGKAIVVLNFPNNPTGYTPGPEEGKQIIAALKEGAEAGINIVAVTDDAYFG 240 Query: 244 LFFEDSLKESLFGRLANLHPRVLAVKIDGATKEEFVWGFRVGFITYASDSKEVLAALEQK 303 LFFEDS+ ESLF L ++HPR+L VK+DGATKE++VWGFRVGFITYAS S ++L+ALEQK Sbjct: 241 LFFEDSMHESLFAGLCDVHPRILPVKVDGATKEDYVWGFRVGFITYASPSSDLLSALEQK 300 Query: 304 TMGIIRATISSGPHPSQTFVLDALKSPEFAEQKEEKFQIMKGRANKVKALLDSGKYGDEV 363 TMGIIRAT+SSG HPSQTFVL A+ +PE+ QK+EKF IMKGRAN+ K +LDS KY D+V Sbjct: 301 TMGIIRATLSSGSHPSQTFVLQAITAPEYKAQKQEKFDIMKGRANRTKEVLDSSKY-DDV 359 Query: 364 WTYYPFNSGYFMCLKLHTVPADALRLHLIHNYGLGTIALGETDLRVAFSCIEEDQLEDLF 423 WTYYPFNSGYFMCLKL TV A+ LR HL+ YG+GTIALG+TDLR+AFSCIEE+ + DLF Sbjct: 360 WTYYPFNSGYFMCLKLKTVEAETLRQHLLEQYGVGTIALGQTDLRIAFSCIEEENIADLF 419 Query: 424 DMVYAGIRDLEKA 436 ++VY+G++DLE A Sbjct: 420 ELVYSGVKDLENA 432 >Q24WK9.1 Q24WK9_DESHY Putative uncharacterized protein Length = 429 Score = 561 bits (1447), Expect = e-158, Method: Compositional matrix adjust. Identities = 263/430 (61%), Positives = 335/430 (77%), Gaps = 2/430 (0%) Query: 4 MNPLAGQLNDSIKAGNEHVYDMLSNLGKALYYPKEGILSQSXXXXXXXXXXXXTIGIATE 63 M+ +A +LND I+A N HVY++LS+LG+ LYYPK GIL+Q+ TIG+ATE Sbjct: 1 MHNIARELNDQIRAENPHVYELLSDLGRNLYYPK-GILTQTDEATEKAYRFNATIGMATE 59 Query: 64 HGVPMHLGVIQDKLSAYSPKDLYGYAPPAGKPELRTLWREKMLRETPSLEGKSFGNPIAT 123 G PM L VIQ+ LS Y+P+D+Y YAPPAGK ++R +WREK+L++ PSL+GK+ PI T Sbjct: 60 KGQPMFLPVIQETLSQYNPQDIYTYAPPAGKSKIRAVWREKLLKDNPSLQGKTMSQPIVT 119 Query: 124 NALTHGLSIVADLFADQGDAVIYPDKNWENYELTFGVRRLSDTVNYPLFTEDMSFNSEGL 183 NALTHGLSI ADLF + D ++ PDK W NY + FG RR ++ N+ FTE+ FN++G+ Sbjct: 120 NALTHGLSIAADLFLNPQDVLVLPDKLWGNYTMIFGTRRNAEMRNFTFFTENGEFNTQGM 179 Query: 184 LDALLAQKERGKAIVLLNFPNNPTGYTPGIKEGEAIVAAILRAAEEGINVVVVSDDAYFG 243 +ALLAQK +GKA++LLNFPNNPTGYTP KE +AIV A+L AE+GINV V+ DDAYFG Sbjct: 180 KEALLAQKAQGKAVLLLNFPNNPTGYTPVEKEAQAIVEALLEVAEQGINVAVLVDDAYFG 239 Query: 244 LFFEDSLKESLFGRLANLHPRVLAVKIDGATKEEFVWGFRVGFITYASDSKEVLAALEQK 303 LF+EDS+KESLFGRLAN+HPR+LAVK+DG TKEE+VWGFR+GFIT+ S V LE K Sbjct: 240 LFYEDSIKESLFGRLANIHPRILAVKVDGPTKEEYVWGFRIGFITFGDASSVVCDVLENK 299 Query: 304 TMGIIRATISSGPHPSQTFVLDALKSPEFAEQKEEKFQIMKGRANKVKALLDSGKYGDEV 363 T IIR+TIS+ HP+QTFVL AL SP+F +QK EK++IM+GRA KVK +L+ G Y D + Sbjct: 300 TKAIIRSTISNASHPAQTFVLHALASPDFEKQKAEKYKIMEGRALKVKEILNRGDYQD-L 358 Query: 364 WTYYPFNSGYFMCLKLHTVPADALRLHLIHNYGLGTIALGETDLRVAFSCIEEDQLEDLF 423 W YYPFNSGYFMCLKL V A+ LRLHL+HNYG+G IALGE+D+RVAFSC+EE+ LE+LF Sbjct: 359 WDYYPFNSGYFMCLKLKGVKAEELRLHLLHNYGVGVIALGESDIRVAFSCVEEEDLEELF 418 Query: 424 DMVYAGIRDL 433 ++Y G +DL Sbjct: 419 KLIYQGTKDL 428 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,606,818,965 Number of extensions: 109043758 Number of successful extensions: 266854 Number of sequences better than 1.0e-05: 246 Number of HSP's gapped: 267202 Number of HSP's successfully gapped: 246 Length of query: 436 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 297 Effective length of database: 1,751,175,118 Effective search space: 520099010046 Effective search space used: 520099010046 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)