BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0389.0011.p (207 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KEG9.1 B3KEG9_9BACI Pyridoxamine 5'-phosphate oxidase-related ... 246 1e-63 C0Z801.1 C0Z801_BREBN Putative uncharacterized protein 219 1e-55 A6Q8U8.1 A6Q8U8_SULNB Putative uncharacterized protein 139 2e-31 B3TCN2.1 B3TCN2_9ARCH Putative Pyridoxamine 5'-phosphate oxidase 135 2e-30 A6Q8S2.1 A6Q8S2_SULNB Putative uncharacterized protein 135 3e-30 >B3KEG9.1 B3KEG9_9BACI Pyridoxamine 5'-phosphate oxidase-related FMN-binding Length = 204 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 117/182 (64%), Positives = 139/182 (76%) Query: 20 GMSFGFLGTSDEQGLPRVTPLNFVYIEGNFYFHGSHAGGKMKSIRHNQQVCFTVADEYAL 79 GMSFGFLGT+DE+G+PRVTPLNF Y+ G FYFHGS G KM +R VCFT+ADEYAL Sbjct: 20 GMSFGFLGTADEEGIPRVTPLNFAYVNGAFYFHGSRMGEKMDHLRRTPAVCFTIADEYAL 79 Query: 80 IPSYFSDPELACPATAYFKSVTAYGQAELVEDAAEKAAVLTHFMQKLQPEGGFAPIDAED 139 IPSYFSDPE+ACPATAYFKSVTA G+A +V+D EKA + MQKLQPEGG+ IDA D Sbjct: 80 IPSYFSDPEMACPATAYFKSVTAIGEAVIVDDLEEKALAMEALMQKLQPEGGYRAIDAND 139 Query: 140 PRYRSRLKGVAVVRIVPEEITAKFKFGQNLKEEERTAVTQGLKDRNGARDAETIAMMEKY 199 Y SRLKGVAV+R+ P+ ++AKFKFGQNLK + AV +GL+ R RD ET ++ KY Sbjct: 140 RAYISRLKGVAVIRLTPQRMSAKFKFGQNLKPDRLQAVIEGLECRGKNRDEETAGLICKY 199 Query: 200 CP 201 P Sbjct: 200 HP 201 >C0Z801.1 C0Z801_BREBN Putative uncharacterized protein Length = 209 Score = 219 bits (558), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 107/187 (57%), Positives = 131/187 (70%), Gaps = 1/187 (0%) Query: 21 MSFGFLGTSDEQGLPRVTPLNFVYIEGNFYFHGSHAGGKMKSIRHNQQVCFTVADEYALI 80 MSFGFLGT G P VTPLN+VY G+ YFHGS G KM ++ N++V F +A EYA+I Sbjct: 24 MSFGFLGTVGADGKPSVTPLNYVYHHGSIYFHGSRIGEKMNNLSANEEVTFAIAKEYAII 83 Query: 81 PSYFSDPELACPATAYFKSVTAYGQAELVEDAAEKAAVLTHFMQKLQPEGGFAPIDAEDP 140 PSYF DP LACPATAY+KSV G+A +V D EKA L FM+KLQPEGG+ IDA+DP Sbjct: 84 PSYFEDPLLACPATAYYKSVRIDGRAVVVSDLREKADALEAFMRKLQPEGGYKTIDADDP 143 Query: 141 RYRSRLKGVAVVRIVPEEITAKFKFGQNLKEEERTAVTQGLKDRNGARDAETIAMMEKYC 200 Y RLKGV +VRI + + KFKFGQNLKE R + +GL +R +DAETI +M +YC Sbjct: 144 DYIPRLKGVGLVRIDADHTSGKFKFGQNLKEPVRNGIIEGLSERGLPQDAETIELMRRYC 203 Query: 201 PYHSSVD 207 P H+ D Sbjct: 204 P-HAHTD 209 >A6Q8U8.1 A6Q8U8_SULNB Putative uncharacterized protein Length = 201 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 105/178 (58%), Gaps = 4/178 (2%) Query: 23 FGFLGTSDEQGLPRVTPLNFVYIEGNFYFHGSHAGGKMKSIRHNQQVCFTVADEYALIPS 82 +G LG S + G P P+NFV I+ +FHGS G K++ + N +V F+V + +LIPS Sbjct: 22 YGVLGLSGD-GKPYTVPVNFVRIDEALFFHGSRKGRKIEMLTSNAEVSFSVVESASLIPS 80 Query: 83 YFSDPE-LACPATAYFKSVTAYGQAELVEDAAEKAAVLTHFMQKLQPEGGFAPIDAEDPR 141 +FS LACPAT +FKSV GQ E++ + EK + M+K QPEGG+ P ED Sbjct: 81 FFSSTGGLACPATQFFKSVHIEGQVEIIGNRDEKRNIFVKLMEKFQPEGGYKPF--EDTE 138 Query: 142 YRSRLKGVAVVRIVPEEITAKFKFGQNLKEEERTAVTQGLKDRNGARDAETIAMMEKY 199 Y L V++IVP AKFK GQ+L +E + L++R D+ET+ +M+++ Sbjct: 139 YDKVLDATVVLKIVPRRTRAKFKLGQHLPKERFEMIISHLEERGTEIDSETVMLMKQF 196 >B3TCN2.1 B3TCN2_9ARCH Putative Pyridoxamine 5'-phosphate oxidase Length = 216 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 66/173 (38%), Positives = 94/173 (54%), Gaps = 4/173 (2%) Query: 24 GFLGTSDEQGLPRVTPLNFVYIEGNFYFHGSHAGGKMKSIRHNQQVCFTVADEYALIPSY 83 G + + DE G P++ P+NFV+I Y H G K+ +IR NQ+V F V +PSY Sbjct: 31 GRVASIDENGFPQIIPMNFVFINDTIYMHSHIRGEKLDNIRRNQKVGFEVDKSLEFLPSY 90 Query: 84 FSDPELACPATAYFKSVTAYGQAELVEDAAEKAAVLTHFMQKLQPEGGFAPIDAEDPRYR 143 FSDP A A + SV G ++ D EK L M+K QPEGG+ PI + Sbjct: 91 FSDPTDASLADTLYISVVIKGNGSIISDKKEKTIALNGLMKKYQPEGGYEPIKPD----M 146 Query: 144 SRLKGVAVVRIVPEEITAKFKFGQNLKEEERTAVTQGLKDRNGARDAETIAMM 196 LKGV V++IVPE + K+K GQN+ + R + + + +RN ET+ +M Sbjct: 147 DVLKGVEVIKIVPESLRGKYKIGQNMDMKSRIDLAKQILERNSPTAKETLDIM 199 >A6Q8S2.1 A6Q8S2_SULNB Putative uncharacterized protein Length = 203 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 76/177 (42%), Positives = 103/177 (58%), Gaps = 4/177 (2%) Query: 22 SFGFLGTSDEQGLPRVTPLNFVYIEGNFYFHGSHAGGKMKSIRHNQQVCFTVADEYALIP 81 ++G L S + +P P+NFV IE + YFHG+ KMK + N +V F+V + YALI Sbjct: 21 AYGTLALSVDD-VPYAVPVNFVRIEDDIYFHGALKNKKMKMLSKNPKVSFSVVENYALID 79 Query: 82 SYFSDPE-LACPATAYFKSVTAYGQAELVEDAAEKAAVLTHFMQKLQPEGGFAPIDAEDP 140 S FS E LACPAT +FKSV+ G +V EKA V T M+KLQP+GG+ P D Sbjct: 80 SDFSTTEGLACPATQFFKSVSMDGVVTVVISREEKANVFTSLMKKLQPKGGYKPF--SDS 137 Query: 141 RYRSRLKGVAVVRIVPEEITAKFKFGQNLKEEERTAVTQGLKDRNGARDAETIAMME 197 Y + +K AV++I I KFKFGQ+L EE + L+ R D +TI +M+ Sbjct: 138 EYDAAIKATAVMKIEVTHIRCKFKFGQHLSEERFEMIVSHLQKRGTQIDKKTIEVMK 194 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,141,841,080 Number of extensions: 45262174 Number of successful extensions: 89872 Number of sequences better than 1.0e-05: 189 Number of HSP's gapped: 89936 Number of HSP's successfully gapped: 189 Length of query: 207 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 78 Effective length of database: 1,845,385,268 Effective search space: 143940050904 Effective search space used: 143940050904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)