BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0389.0010.p (457 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KEG8.1 B3KEG8_9BACI Regulatory protein GntR HTH 273 2e-71 A9U6T3.1 A9U6T3_PHYPA Predicted protein (Fragment) 239 6e-61 C0Z4F1.1 C0Z4F1_BREBN Probable transcriptional regulator 204 2e-50 Q1IPM7.1 Q1IPM7_ACIBL Transcriptional regulator, GntR family 171 2e-40 Q0JZR5.1 Q0JZR5_RALEH Transcriptional regulator, MocR family EC=... 166 4e-39 >B3KEG8.1 B3KEG8_9BACI Regulatory protein GntR HTH Length = 488 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 139/245 (56%), Positives = 173/245 (70%), Gaps = 8/245 (3%) Query: 209 LSSWGNRLMHR-------HVSIYEPADGAFVSFRSRGMLMEHFPYAEWRSALKYAGGKSG 261 LS+WG RLM + + + EP G +SF + M ME FPY+EWRSAL YAGG G Sbjct: 100 LSAWGQRLMSQSGEYVSAQLLLKEPPPGT-ISFANARMPMEDFPYSEWRSALSYAGGSGG 158 Query: 262 GLLEGYCPPQGEEGLRRAIAAHLRVTRGIRAEAEHIVLFSGSMQGIVLLAQLLLEPGSPA 321 L+ PP+G+ LRRAIA HLR TRGI+A+ EHIV+FSGSMQG+VL+ QLL++PG Sbjct: 159 AELQNGAPPEGDIELRRAIAGHLRFTRGIQADPEHIVVFSGSMQGLVLMFQLLVDPGDHV 218 Query: 322 VVEDPGFHGIRRAVEISGGELLLGRVDESGLVPQDWAARLLFVTPSRQFPTGAVLPXXXX 381 V+EDPG+ GI R + +SGG L VD++GL+P +W A LL V+PSRQ+PTGAVLP Sbjct: 219 VMEDPGYQGIHRGISLSGGIPLPSPVDDAGLIPCEWDAGLLVVSPSRQYPTGAVLPLERR 278 Query: 382 XXXXXXXXXXXXXIVEDDYDSEFRWGGRPIEPLKALDHEERVIYIGSFSNSMFSGLRLGY 441 I+EDDYDSEFRWGG+PIEPLK LD E RVI++GSFS +MF+GLR+GY Sbjct: 279 RALLNWARSRQAFIIEDDYDSEFRWGGKPIEPLKMLDDEGRVIFVGSFSKTMFTGLRIGY 338 Query: 442 AVLPP 446 AVLPP Sbjct: 339 AVLPP 343 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 54/126 (42%), Positives = 72/126 (57%), Gaps = 13/126 (10%) Query: 1 MNFTLPYDQYLAVHRYKYLALYHALRAAIXXXXXXXXXXXXSTRKLAELYAMSRGSASQV 60 M LP++ Y+ +RYKYLALYHA+RAAI +TR+LA LY +SRGSA+Q Sbjct: 1 MELGLPFETYVEQYRYKYLALYHAIRAAIHSGKLPEGTRLPATRELARLYGVSRGSAAQC 60 Query: 61 YDMLLADGYIRTETGRGTFVAD----DSFYPAEGERKGA---------AQWAEGDDAADM 107 YDML+A+GY+ + G GT+VA+ + P ER A +Q E A + Sbjct: 61 YDMLMAEGYVVSRQGSGTYVAEGIAATAGQPPLAERAPALSAWGQRLMSQSGEYVSAQLL 120 Query: 108 LKEPAP 113 LKEP P Sbjct: 121 LKEPPP 126 >A9U6T3.1 A9U6T3_PHYPA Predicted protein (Fragment) Length = 557 Score = 239 bits (609), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 123/207 (59%), Positives = 145/207 (70%) Query: 239 MLMEHFPYAEWRSALKYAGGKSGGLLEGYCPPQGEEGLRRAIAAHLRVTRGIRAEAEHIV 298 M ME FPYAEWRSA+ YAGG+ G ++ P G+ GLR+A+AAHLRVTRGI + E IV Sbjct: 1 MSMELFPYAEWRSAMAYAGGRGGEDMQRGADPAGDLGLRQALAAHLRVTRGIHTDPEQIV 60 Query: 299 LFSGSMQGIVLLAQLLLEPGSPAVVEDPGFHGIRRAVEISGGELLLGRVDESGLVPQDWA 358 LFSGSMQGI LL QLLL G AV+EDP + GI RA G E++ VD G+ DW Sbjct: 61 LFSGSMQGITLLFQLLLNEGEAAVLEDPCYSGIIRAAAACGAEVIPAEVDVHGIRLSDWD 120 Query: 359 ARLLFVTPSRQFPTGAVLPXXXXXXXXXXXXXXXXXIVEDDYDSEFRWGGRPIEPLKALD 418 ARL+ VTPSRQ+PTGAVL I+EDDYDSEFR+GGRPIEPLK LD Sbjct: 121 ARLVLVTPSRQYPTGAVLTLERRRQLLDWAERHEAVILEDDYDSEFRFGGRPIEPLKTLD 180 Query: 419 HEERVIYIGSFSNSMFSGLRLGYAVLP 445 +RVIYIGSFS +MF+GLRLGYA++P Sbjct: 181 TRDRVIYIGSFSKTMFAGLRLGYAIVP 207 >C0Z4F1.1 C0Z4F1_BREBN Probable transcriptional regulator Length = 478 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 113/242 (46%), Positives = 145/242 (59%), Gaps = 4/242 (1%) Query: 207 IPLSSWGNRLMHRHV-SIYEPADGAFVSFRSRGMLMEHFPYAEWRSALKYAGGKS--GGL 263 + LS+WG R+ + E V FR FP+ EW + YA ++ Sbjct: 93 LQLSNWGERICRMPLRKQIEEGSPIKVDFRIGRTDYHQFPFQEW-NRFMYAEVRNFLAKQ 151 Query: 264 LEGYCPPQGEEGLRRAIAAHLRVTRGIRAEAEHIVLFSGSMQGIVLLAQLLLEPGSPAVV 323 E QG LR AIA HLR TRGI A+A+ IV+ +GSMQ I LLAQLL+ PG P +V Sbjct: 152 HEEANVAQGHLPLREAIAVHLRRTRGIPAKADRIVVCNGSMQVITLLAQLLVNPGDPVIV 211 Query: 324 EDPGFHGIRRAVEISGGELLLGRVDESGLVPQDWAARLLFVTPSRQFPTGAVLPXXXXXX 383 E+P F GI++A+ +GG +VD+ G+ DW +RLLFVTPSR FPTG++L Sbjct: 212 EEPSFTGIKKAIASTGGVPSPVQVDKFGIQVHDWKSRLLFVTPSRHFPTGSILSQDRRRQ 271 Query: 384 XXXXXXXXXXXIVEDDYDSEFRWGGRPIEPLKALDHEERVIYIGSFSNSMFSGLRLGYAV 443 IVEDDYDSEFRWGGRP+EPLKALD E+RV Y+G+F+ + LR+GYAV Sbjct: 272 LLDWASRQGSIIVEDDYDSEFRWGGRPVEPLKALDQEDRVAYVGTFTKTTLPDLRIGYAV 331 Query: 444 LP 445 LP Sbjct: 332 LP 333 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 37/77 (48%), Positives = 53/77 (68%) Query: 5 LPYDQYLAVHRYKYLALYHALRAAIXXXXXXXXXXXXSTRKLAELYAMSRGSASQVYDML 64 + + ++L +R+ YLALYHA++ AI S+R+LA L+ +SRGS +QVYDML Sbjct: 1 MSFHKFLQEYRFTYLALYHAIKEAIATGALHHGMKLPSSRELAGLHQISRGSVNQVYDML 60 Query: 65 LADGYIRTETGRGTFVA 81 +ADGY+ +E GRGTFV Sbjct: 61 VADGYVVSEVGRGTFVT 77 >Q1IPM7.1 Q1IPM7_ACIBL Transcriptional regulator, GntR family Length = 477 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 88/207 (42%), Positives = 125/207 (60%), Gaps = 2/207 (0%) Query: 241 MEHFPYAEWRSALKYAGGKSGGLLEGYCPPQGEEGLRRAIAAHLRVTRGIRAEAEHIVLF 300 +E FP+A WR L + ++ Y PP+G LR I H+R R ++ + + +++ Sbjct: 132 LETFPFALWRRLLLRSARRTRVAELDYGPPEGNSQLRELICTHVRRARAVQCDTDQVIIV 191 Query: 301 SGSMQGIVLLAQLLLEPGSPAVVEDPGFHGIRRAVEISGGELLLGRVDESGLVPQDWA-- 358 +GS Q I L++++LLE G P +EDP + G R A+ ++G +LL VD +G++P Sbjct: 192 NGSQQAIDLISRVLLERGDPVCIEDPSYQGTREALRVAGAKLLPIAVDAAGIIPSKLPSR 251 Query: 359 ARLLFVTPSRQFPTGAVLPXXXXXXXXXXXXXXXXXIVEDDYDSEFRWGGRPIEPLKALD 418 ARL FVTPS QFPTGA+LP IVEDDYD EF + G P+E L+ LD Sbjct: 252 ARLAFVTPSHQFPTGAILPLARRIELLRWAKRANAFIVEDDYDGEFNYAGNPLESLQGLD 311 Query: 419 HEERVIYIGSFSNSMFSGLRLGYAVLP 445 E RVIYIG+FS ++FS LRLGY ++P Sbjct: 312 REGRVIYIGTFSRTIFSALRLGYLIVP 338 >Q0JZR5.1 Q0JZR5_RALEH Transcriptional regulator, MocR family EC=2.6.1.- Length = 524 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 99/251 (39%), Positives = 133/251 (52%), Gaps = 5/251 (1%) Query: 209 LSSWGNRLMHRHVSIYEPADGAFVSFRSRGMLMEHFPYAEWRSALKYAGGKSGGLLEGYC 268 LS +G R+ + A+ F + FP WR A + + L Y Sbjct: 104 LSEFGRRVAGLGMPALLQAEPVRFDFLYGAVASRDFPTLAWRRAYQAELLRQQNSLS-YA 162 Query: 269 PPQGEEGLRRAIAAHLRVTRGIRAEAEHIVLFSGSMQGIVLLAQLLLEPGSPAVVEDPGF 328 PP+GE LRRA+ +LR RG+ EAE +++ GS Q I L A+LLL+ G EDPG+ Sbjct: 163 PPEGEASLRRALQGYLRRARGLACEAEQVLVVHGSQQAIDLCARLLLDAGDAFAFEDPGY 222 Query: 329 HGIRRAVEISGGELLLGRVDESGL----VPQDWAARLLFVTPSRQFPTGAVLPXXXXXXX 384 RR E +G VD +GL +PQD RL++VTPS QFP G VLP Sbjct: 223 LMARRCFEATGARCQATPVDGNGLDTASLPQDDRVRLVYVTPSHQFPLGGVLPIGRRLEL 282 Query: 385 XXXXXXXXXXIVEDDYDSEFRWGGRPIEPLKALDHEERVIYIGSFSNSMFSGLRLGYAVL 444 I+EDDYD EFR+G RPI+ L+++D + RVIY+G+FS ++ LRLGY VL Sbjct: 283 LQWAQRHDAWIIEDDYDGEFRYGQRPIDTLRSIDTDGRVIYVGTFSKALSPQLRLGYLVL 342 Query: 445 PPXXXXTRRQS 455 PP RQ+ Sbjct: 343 PPELVPVFRQA 353 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,588,225,014 Number of extensions: 106652252 Number of successful extensions: 284692 Number of sequences better than 1.0e-05: 3274 Number of HSP's gapped: 280981 Number of HSP's successfully gapped: 3278 Length of query: 457 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 318 Effective length of database: 1,751,175,118 Effective search space: 556873687524 Effective search space used: 556873687524 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)