BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0389.0009.p
         (126 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KEG8.1 B3KEG8_9BACI Regulatory protein GntR HTH                     122   9e-27
C0Z4F1.1 C0Z4F1_BREBN Probable transcriptional regulator              104   2e-21
A9U6T3.1 A9U6T3_PHYPA Predicted protein (Fragment)                     82   1e-14

>B3KEG8.1 B3KEG8_9BACI Regulatory protein GntR HTH
          Length = 488

 Score =  122 bits (306), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 63/124 (50%), Positives = 74/124 (59%)

Query: 1   LEQRALARFMHTGGYGRHLRRMTRIYGERARIFRSLLSERLGLLFEPLPGDAGLHIYAHW 60
           LEQRALARF+  GGYGRHLRRMTR+YG R    R  +      LF   PGDAGLH+YA+W
Sbjct: 364 LEQRALARFIVRGGYGRHLRRMTRLYGARYEALRHGMETHASGLFRLHPGDAGLHVYANW 423

Query: 61  XXXXXXXXXXXXXXLKRGTDFRDASLYRVVPGAPAACFSFAHLDSGQLEIGVNRLLLAWK 120
                          KRG  FRDA+ Y   PG PAACF F+HL    +E GV R+  AW+
Sbjct: 424 LRSAEEYALFQEAARKRGVMFRDAAAYHRTPGPPAACFGFSHLGISSIEEGVARMAQAWR 483

Query: 121 DVQN 124
           D+Q 
Sbjct: 484 DMQK 487


>C0Z4F1.1 C0Z4F1_BREBN Probable transcriptional regulator
          Length = 478

 Score =  104 bits (260), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 74/124 (59%)

Query: 1   LEQRALARFMHTGGYGRHLRRMTRIYGERARIFRSLLSERLGLLFEPLPGDAGLHIYAHW 60
           +EQRALA FM +G Y RH+RRM R+YG++  ++  +L E +G LF  L  DAGLHIY+ W
Sbjct: 355 MEQRALAAFMKSGHYERHIRRMNRVYGKKYALYHQMLQENMGSLFTFLQSDAGLHIYSVW 414

Query: 61  XXXXXXXXXXXXXXLKRGTDFRDASLYRVVPGAPAACFSFAHLDSGQLEIGVNRLLLAWK 120
                          ++G  + DA+ Y + P A AACF F+HL+  +++ G+  +L AW+
Sbjct: 415 KRTEDEYIRLRTACRQKGVIWEDATTYFMRPPASAACFGFSHLNEEEMKEGIRLVLEAWE 474

Query: 121 DVQN 124
            +  
Sbjct: 475 SIST 478


>A9U6T3.1 A9U6T3_PHYPA Predicted protein (Fragment)
          Length = 557

 Score = 82.4 bits (202), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 54/86 (62%), Gaps = 1/86 (1%)

Query: 1   LEQRALARFMHTGGYGRHLRRMTRIYGERARIFRSLLSERLGLLFEPLPGDAGLHIYAHW 60
           LEQRALARFM  G YGRHLRR+TRIYG R R F + + E+ G LF  +PGD+GLH+YA+W
Sbjct: 229 LEQRALARFMARGDYGRHLRRLTRIYGARHRRFCTRMREKAGHLFSLMPGDSGLHVYAYW 288

Query: 61  XXXXXXXXXXXXXXLKRG-TDFRDAS 85
                           RG T  RDAS
Sbjct: 289 LQPPEAFAAFTAATAARGVTAARDAS 314


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.328    0.143    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 689,966,055
Number of extensions: 23269090
Number of successful extensions: 43970
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 43991
Number of HSP's successfully gapped: 10
Length of query: 126
Length of database: 3,060,696,203
Length adjustment: 91
Effective length of query: 35
Effective length of database: 2,203,383,838
Effective search space: 77118434330
Effective search space used: 77118434330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 126 (53.1 bits)