BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0389.0003.p (364 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K9X9.1 B3K9X9_9BACI Putative uncharacterized protein 270 1e-70 C0GES5.1 C0GES5_9FIRM Putative uncharacterized protein 218 1e-54 C0GCD5.1 C0GCD5_9FIRM Putative uncharacterized protein 207 9e-52 C0GES2.1 C0GES2_9FIRM YheD 159 3e-37 C0ZF03.1 C0ZF03_BREBN Putative uncharacterized protein 157 1e-36 >B3K9X9.1 B3K9X9_9BACI Putative uncharacterized protein Length = 367 Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 150/360 (41%), Positives = 197/360 (54%), Gaps = 4/360 (1%) Query: 1 MGQKLVGILLNAAMHRGVPRLKTGQXXXXXXXXXXXXXGLTPCFLKLSDIDTRSGYSIAY 60 M + VGILLN +R + G GL PCF + I +G + Sbjct: 1 MHLEYVGILLNNNTYRRISSGGIGTESLANYEEAAAMNGLVPCFFTIHHISLETGKVTGF 60 Query: 61 VKGPNGYRSAVIPTPDVIHNRAIYDPGSRG--VERLLRSGVQVYNTCNRYGKDQIHGLLE 118 V P GY IP P VIH RAIY +++L++ GV VYN RYGK+ IH +LE Sbjct: 61 VPAPAGYSQVHIPIPRVIHMRAIYHKKQEQALIDQLIKRGVFVYNGRTRYGKNVIHHMLE 120 Query: 119 QNEGLRGLLPVT-SAGLSGLKEMMDSYSDLILKPCRGSIGQGVMRLSRNS-PGHWTWSYL 176 Q++G+ LP T A + ++ M+ + DL+LKPC GSIG G+MRL NS +T+S Sbjct: 121 QDQGILPSLPHTVEATPASIRSMLSQHGDLVLKPCNGSIGVGIMRLKGNSLRSQFTYSRS 180 Query: 177 PGGSNSWASTAVYQDXXXXXXXXXXXXXXYLVQERIPLAELGGRPFDLRVTVQRGWGGEW 236 + W + + ++VQ+RIPLAE RPFD+RVTVQRG G W Sbjct: 181 SPSAKGWRTVTLPPGKLHPLIYQRIRQAPFVVQQRIPLAEYDDRPFDIRVTVQRGGSGRW 240 Query: 237 QVTGLFAKRAAPGGFVSNIARGGEALDPTFALEQAFSGAAAAGIRMSVLAHSLSVARELE 296 +V G+FAK +AP FVSNIA+GG A L + + SL VA+ L Sbjct: 241 EVAGMFAKTSAPRTFVSNIAQGGSAYRVPDILARCMPDLPVGLTIERIAEFSLHVAKTLS 300 Query: 297 KSLPGLSDIGLDMGITGKGRIYFIECNGRDQRYGFRKAGLTGTWKESYRKPMAYARYLLD 356 +P +D G+D+GIT G+IYFIECNG DQRYGFR+AG+ WK SY PMA+ARYL D Sbjct: 301 LYIPYAADFGMDVGITENGKIYFIECNGCDQRYGFREAGMEEVWKYSYYNPMAFARYLYD 360 >C0GES5.1 C0GES5_9FIRM Putative uncharacterized protein Length = 369 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 122/361 (33%), Positives = 190/361 (52%), Gaps = 10/361 (2%) Query: 1 MGQKLVGILLNAAMHRGVPRLKTGQXXXXXXXXXXXXXGLTPCFLKLSDIDTRSGYSIAY 60 M + +GIL++ A+ +G+P +TG G++ CF + D++ AY Sbjct: 1 MSNECLGILVSNAVFQGIPSKRTGYEHIAFYEEAARKNGISLCFFRFRDLEAAQREISAY 60 Query: 61 VKGPNG-YRSAVIPTPDVIHNRAIY-DPGSRGV-ERLLRSGVQVYNTCNRYGKDQIHGLL 117 V+ + Y ++ P VIHNR +Y R V L + G +YN NRY K +++ LL Sbjct: 61 VQNEHSEYEKVIVSVPKVIHNRGLYFSKKKRAVFTELQKEGKILYNPWNRYPKLEVYQLL 120 Query: 118 EQNEGLRGLLPVTS-AGLSGLKEMMDSYSDLILKPCRGSIGQGVMRLSRNSPGHWTWSYL 176 ++++ L LP T A ++ M+ +Y +I+KP S+G G+M++ +N + + Sbjct: 121 KRDKNLHQYLPKTQKATDDSVQNMLTAYDKVIIKPNSSSLGNGLMKIEKNK--EFVLTMY 178 Query: 177 PGGSNSWASTAVYQDXXXXXXXXXXXXXXYLVQERIPLAELGGRPFDLRVTVQRGWGGEW 236 SW + YLVQE IPLA+ GG +DLR++ Q+ G+W Sbjct: 179 SQKKKSWIDIT-FTKVIPPILQRKLAAGTYLVQEYIPLAKYGGSVYDLRISCQKNGEGKW 237 Query: 237 QVTGLFAKRAAPGGFVSNIARGGEALDPTFALEQAFSGAAAAGIRMSVLAHSLSVARELE 296 QVTG+ K A FV+N+ARGG+ L ++F+ + + S AR LE Sbjct: 238 QVTGVVGKVAKGRNFVTNVARGGKTYPCDVLLNESFN---KVHLLEEIEGFSTRAARVLE 294 Query: 297 KSLPGLSDIGLDMGITGKGRIYFIECNGRDQRYGFRKAGLTGTWKESYRKPMAYARYLLD 356 ++ PGL+D+GLD+GI G + FIECNGRD R FR AGL TW+ ++ P+ Y +YLLD Sbjct: 295 EAYPGLADLGLDLGIAEDGSVKFIECNGRDLRITFRNAGLYKTWEATFTTPIDYGKYLLD 354 Query: 357 R 357 + Sbjct: 355 K 355 >C0GCD5.1 C0GCD5_9FIRM Putative uncharacterized protein Length = 360 Score = 207 bits (528), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 123/356 (34%), Positives = 179/356 (50%), Gaps = 9/356 (2%) Query: 6 VGILLNAAMHRGVPRLKTGQXXXXXXXXXXXXXGLTPCFLKLSDIDTRSGYSIAYVKGPN 65 +G+L++ ++ G+P +TG + F +LSDID G AYVK Sbjct: 8 LGVLVDKLVYWGIPFGRTGYENIAFYEDAAKKHNIALSFFQLSDIDLTKGQVQAYVKNDA 67 Query: 66 G-YRSAVIPTPDVIHNRAIY--DPGSRGVERLLRSGVQVYNTCNRYGKDQIHGLLEQNEG 122 G YR +IP P VIHNR +Y V+ LL G +YN NR+ K +IH LL Q+ Sbjct: 68 GSYRKTIIPVPKVIHNRGLYFSKKSKAKVDALLADGKILYNPWNRFLKLEIHNLLWQDPQ 127 Query: 123 LRGLLPVT-SAGLSGLKEMMDSYSDLILKPCRGSIGQGVMRLSRNSPGHWTWSYLPGGSN 181 LR LP T A + M++ Y +ILKP GS+G G+M+L R + ++ Sbjct: 128 LRPYLPETYRATKETINAMLEKYKLIILKPNGGSLGHGLMKLERTGE-EFLLTHYSNREK 186 Query: 182 SWASTAVYQDXXXXXXXXXXXXXXYLVQERIPLAELGGRPFDLRVTVQRGWGGEWQVTGL 241 W ++ + Y VQE IPLA+ G ++LRV Q+ +WQVTG+ Sbjct: 187 EWKQSS-FSAEFPQVLLKNISGRSYAVQEFIPLAKYKGCVYNLRVAYQKNGTAQWQVTGV 245 Query: 242 FAKRAAPGGFVSNIARGGEALDPTFALEQAFSGAAAAGIRMSVLAHSLSVARELEKSLPG 301 K A FV+NIA+GG+A LE F+ A + + A+ LE PG Sbjct: 246 VGKLAHDTNFVTNIAKGGKAYSLDVLLENKFN---EAKLLQEIEMFCFQAAKALENEYPG 302 Query: 302 LSDIGLDMGITGKGRIYFIECNGRDQRYGFRKAGLTGTWKESYRKPMAYARYLLDR 357 L+D+G+D+G+T G + IECNGR R F+ A L W+ ++ P+ Y +YLL + Sbjct: 303 LADLGIDLGVTKDGNLKLIECNGRGLRLSFKDAQLYEAWRAAFETPILYGKYLLAK 358 >C0GES2.1 C0GES2_9FIRM YheD Length = 462 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 102/329 (31%), Positives = 165/329 (50%), Gaps = 15/329 (4%) Query: 44 FLKLSDIDTRSGYSIAYVK-----GPNGYRSAVIPTPDVIHNRAIYDPGSRGVER--LLR 96 LSD++ + Y++ G G++ +P PDVIHNR + GS + LL+ Sbjct: 137 IFSLSDVNRQDKSVEGYLRVRDHGGIPGWQQRRLPLPDVIHNRISFPRGSTKDQEISLLK 196 Query: 97 SGVQVYNTCNR---YGKDQIHGLLEQNEGLRGLLPVTS--AGLSGLKEMMDSYSDLILKP 151 +Q NR + K QI LL+ + R +P T G ++EM ++ + LKP Sbjct: 197 QEMQNMMAINRITAFSKWQIAKLLQNDSQARAYIPETKLLQGPETIREMTLKHATVYLKP 256 Query: 152 CRGSIGQGVMRLSRNSPGHWTWSYLPGGSNSWASTAVYQDXXXXXXXXXXXXXXYLVQER 211 R S+G G+++L+++SP H+ SY +N A + + Y+VQ+ Sbjct: 257 VRRSLGLGIIKLAKSSPEHYVASYRTDDNNESAKGKI--EDLLVGLEDIMGGRLYIVQQG 314 Query: 212 IPLAELGGRPFDLRVTVQRGWGGEWQVTGLFAKRAAPGGFVSNIARGGEALDPTFALEQA 271 I LA + G+PFDLRVTVQ+ G W ++ + G ++N+A GG+ L L Sbjct: 315 IDLAHINGKPFDLRVTVQKDGTGAWSLSSWGTRVGVSGSHITNVASGGQGLPIEKVLGAV 374 Query: 272 FSGAAAAGIRMSVLAHSLSVARELEKSLPGLSDIGLDMGITGKGRIYFIECNGRDQRYGF 331 F+G A+ I + S+ + LE+ L + D+GLD+GI G+ Y IE N RD R Sbjct: 375 FAGKYAS-ITEEIHKVSIIICEALERGLQDIGDVGLDIGIDTGGKPYLIEVNFRDHRLTA 433 Query: 332 RKAGLTGTWKESYRKPMAYARYLLDRPAR 360 + +W ++Y+KP+ Y RYL ++ + Sbjct: 434 EEMDDPDSWAKTYKKPIYYLRYLYEQQSH 462 >C0ZF03.1 C0ZF03_BREBN Putative uncharacterized protein Length = 354 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 106/330 (32%), Positives = 160/330 (48%), Gaps = 30/330 (9%) Query: 39 GLTPCFLKLSDIDTRSGYSIAYVKGPNGYRSAVIPTPDVIHNRAIY-DPGSRGVERLLRS 97 GL P F + Y N S ++ P VIHNR + D +R V R L Sbjct: 25 GLEPVFFHPRHVKPGDERVKGYFWNGNRLVSQLVSVPGVIHNRVLTGDAKARNVIRRLSQ 84 Query: 98 GVQVYNTCNRYGKDQIHGLLEQNEGLRGLLPVTSA-GLSGLKEMMDSYSDLILKPCRGSI 156 V+N K ++H +L +NE +R LP T + L++ ++ Y + +KP GS+ Sbjct: 85 KKTVFNGLVVRDKRKVHQMLWKNEQIRSYLPHTVPYSMEQLRQFLNKYQVVYVKPSIGSV 144 Query: 157 GQGVMRLSRNSPGHWTWSYLPGGSNSWASTAVYQDXXXXXXXXXXX----XXXYLVQERI 212 G GV R+ R+ GG+ + ++ Q +L+Q I Sbjct: 145 GIGVARIERH-----------GGNYHFIASKKRQILSHSQIFSTVRRWVGNKRFLIQRGI 193 Query: 213 PLAELGGRPFDLRVTVQRGWGGEWQVTGLFAKRAAPGGFVSNIARGG------EALDPTF 266 PLA GG+ FD+RV+VQ+ +W V+G+ AK A +SN++RGG EAL P F Sbjct: 194 PLARYGGKTFDIRVSVQKNKEKQWTVSGMVAKVANTKNKLSNLSRGGTAVPFSEALVPIF 253 Query: 267 -ALEQAFSGAAAAGIRMSVLAHSLSVARELEKSLPGLSDIGLDMGITGKGRIYFIECNGR 325 ++Q + GI ++ +A + + L+D+G+DMGI +G Y IE N R Sbjct: 254 PEVKQQQAVIERVGIA------AVEIAEQYGRHFSSLADLGMDMGIDERGNPYLIEVNVR 307 Query: 326 DQRYGFRKAGLTGTWKESYRKPMAYARYLL 355 DQRY F KAG +K++YR P+ YA+ LL Sbjct: 308 DQRYSFFKAGEKEMFKQTYRHPLEYAQALL 337 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.138 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,163,706,231 Number of extensions: 90146963 Number of successful extensions: 181746 Number of sequences better than 1.0e-05: 184 Number of HSP's gapped: 181490 Number of HSP's successfully gapped: 186 Length of query: 364 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 227 Effective length of database: 1,770,017,148 Effective search space: 401793892596 Effective search space used: 401793892596 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)