BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0387.0002.p
         (58 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q9Z9W1.1 Y655_BACHD Uncharacterized HTH-type transcriptional reg...    88   3e-16
Q65N30.1 Q65N30_BACLD Putative uncharacterized protein                 87   4e-16
B3KD87.1 B3KD87_9BACI Helix-turn-helix HxlR type                       87   6e-16
Q5WI43.1 Q5WI43_BACSK Transcriptional regulator                        86   8e-16
A8FC39.1 A8FC39_BACP2 Possible transcriptional regulator               81   3e-14

>Q9Z9W1.1 Y655_BACHD Uncharacterized HTH-type transcriptional regulator
           BH0655
          Length = 113

 Score = 87.8 bits (216), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/47 (85%), Positives = 44/47 (93%)

Query: 12  LEADGMVRRKEYPQVPPKVEYSLTDKAETLLPVLEWLCEWGTKNQNS 58
           LEADG+V+RKEYPQVPPKVEYSLTDKA TLLP+LE LCEWG KNQN+
Sbjct: 67  LEADGLVKRKEYPQVPPKVEYSLTDKAGTLLPILEELCEWGVKNQNN 113


>Q65N30.1 Q65N30_BACLD Putative uncharacterized protein
          Length = 111

 Score = 87.4 bits (215), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/45 (88%), Positives = 43/45 (95%)

Query: 12  LEADGMVRRKEYPQVPPKVEYSLTDKAETLLPVLEWLCEWGTKNQ 56
           LEADG+V+RKEYPQVPPKVEYSLTDKAE+LLPVLE LCEWG KNQ
Sbjct: 67  LEADGLVKRKEYPQVPPKVEYSLTDKAESLLPVLEGLCEWGLKNQ 111


>B3KD87.1 B3KD87_9BACI Helix-turn-helix HxlR type
          Length = 113

 Score = 86.7 bits (213), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 40/45 (88%), Positives = 42/45 (93%)

Query: 12  LEADGMVRRKEYPQVPPKVEYSLTDKAETLLPVLEWLCEWGTKNQ 56
           LEADG+V+RKEYPQVPPKVEYSLTDKA TLLPVLE LCEWG KNQ
Sbjct: 67  LEADGLVKRKEYPQVPPKVEYSLTDKAVTLLPVLEGLCEWGVKNQ 111


>Q5WI43.1 Q5WI43_BACSK Transcriptional regulator
          Length = 113

 Score = 86.3 bits (212), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 39/47 (82%), Positives = 43/47 (91%)

Query: 12  LEADGMVRRKEYPQVPPKVEYSLTDKAETLLPVLEWLCEWGTKNQNS 58
           LEADGMV+RKEYPQ+PPKVEYSLT+KAETLLPVLE LCEWG  NQ +
Sbjct: 67  LEADGMVKRKEYPQIPPKVEYSLTEKAETLLPVLEELCEWGVANQKN 113


>A8FC39.1 A8FC39_BACP2 Possible transcriptional regulator
          Length = 112

 Score = 81.3 bits (199), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/47 (78%), Positives = 43/47 (91%)

Query: 12  LEADGMVRRKEYPQVPPKVEYSLTDKAETLLPVLEWLCEWGTKNQNS 58
           LEADGM+ RKEYPQVPPKVEYSLT KAETLLP+LE LC+WG KN+++
Sbjct: 66  LEADGMIIRKEYPQVPPKVEYSLTYKAETLLPILEQLCDWGEKNRSN 112


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.133    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 380,467,945
Number of extensions: 10707043
Number of successful extensions: 20381
Number of sequences better than 1.0e-05: 505
Number of HSP's gapped: 20401
Number of HSP's successfully gapped: 506
Length of query: 58
Length of database: 3,060,696,203
Length adjustment: 31
Effective length of query: 27
Effective length of database: 2,768,644,738
Effective search space: 74753407926
Effective search space used: 74753407926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 125 (52.8 bits)