BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0041.p (331 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q67KI9.1 Q67KI9_SYMTH Oligopeptide ABC transporter ATP-binding p... 423 e-117 B4BRS1.1 B4BRS1_9BACI Oligopeptide/dipeptide ABC transporter, AT... 418 e-115 C0ZB25.1 C0ZB25_BREBN ABC transporter ATP-binding protein 413 e-113 A6NZV6.1 A6NZV6_9BACE Putative uncharacterized protein 407 e-112 C5D5U0.1 C5D5U0_9BACI Oligopeptide/dipeptide ABC transporter, AT... 405 e-111 >Q67KI9.1 Q67KI9_SYMTH Oligopeptide ABC transporter ATP-binding protein Length = 339 Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust. Identities = 200/320 (62%), Positives = 251/320 (78%) Query: 9 ELLEVSGLCTEFSTAAGTIRAVDGISLSVRKGETLGIVGESGCGKSITSLSIMQLLPKRI 68 +L+E+ L T + T G ++AVDG+ L + +GETLG+VGESGCGKS+TSLSIM+L+P Sbjct: 12 KLVEIRNLQTHYFTEDGVVKAVDGVDLYINRGETLGVVGESGCGKSVTSLSIMRLIPNPP 71 Query: 69 SRIAAGQIRFEGKDMLKMPVKEVRGIRGNRIAMIFQEPMTSLNPVFKIGRQISESARFHL 128 +I G+I FEG+D+LK E+R IRGN I+MIFQEPMTSLNPV+ IG QI+E+ H Sbjct: 72 GKIVGGEILFEGEDLLKKSEAEMRKIRGNEISMIFQEPMTSLNPVYTIGDQIAEAIELHQ 131 Query: 129 KLSKKEADERAVEMLRKVGIPRPEKIAQQYAHQLSGGMRQRVMIAMAMVCSPQLLIADEP 188 LS KEA E+A+EMLR VGIP PE+ ++Y HQLSGGMRQRVMIAMA+ C+P+LLIADEP Sbjct: 132 GLSHKEAIEKAIEMLRLVGIPLPEQRVKEYPHQLSGGMRQRVMIAMALSCNPKLLIADEP 191 Query: 189 TTALDVTIQAQILDLMRELQQTEGMSILMITHDLGVVAEMCDRVVIMYAGQIVEEADVAT 248 TTALDVTIQAQIL+LM++L++ GM+I++ITHDLGVVAEMC+RVV+MYAG++VEEAD Sbjct: 192 TTALDVTIQAQILELMKKLKKELGMAIMLITHDLGVVAEMCERVVVMYAGKVVEEADAVA 251 Query: 249 LFGKPLHPYTQGLLASLPQLAGENDRLTSIPGQVPNPANLPSGCRFAPRCPAAVDRCWAE 308 LF PLHPYT+GLL S+P+L E ++L I G VPNP NLP GCRF PRCP A DRC AE Sbjct: 252 LFQNPLHPYTEGLLKSIPRLDQEVEKLHVIEGAVPNPLNLPEGCRFHPRCPVATDRCRAE 311 Query: 309 RPELLEIRPGHSCRCLLQQE 328 +P L ++ PG C L +E Sbjct: 312 QPTLQQVAPGRKVACFLAEE 331 >B4BRS1.1 B4BRS1_9BACI Oligopeptide/dipeptide ABC transporter, ATPase subunit Length = 332 Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust. Identities = 194/320 (60%), Positives = 247/320 (77%) Query: 9 ELLEVSGLCTEFSTAAGTIRAVDGISLSVRKGETLGIVGESGCGKSITSLSIMQLLPKRI 68 ++L++ L T F + I+AVDG+++++ KGET+G+VGESG GKS+TSLS+M+LL Sbjct: 4 KILDIQNLQTSFFSDGIEIKAVDGVNITIYKGETVGVVGESGSGKSVTSLSVMRLLKDTP 63 Query: 69 SRIAAGQIRFEGKDMLKMPVKEVRGIRGNRIAMIFQEPMTSLNPVFKIGRQISESARFHL 128 R+ G I FEGK++L++ +E+R IRGN IAMIFQEPMTSLNPV+KIG+Q+ ES R HL Sbjct: 64 GRVVGGTILFEGKNLLELSEREMRSIRGNEIAMIFQEPMTSLNPVYKIGKQLEESIRLHL 123 Query: 129 KLSKKEADERAVEMLRKVGIPRPEKIAQQYAHQLSGGMRQRVMIAMAMVCSPQLLIADEP 188 K++A E AV ML+ VG+PR E+I +Y QLSGGMRQRVMIAMAM C P+LLIADEP Sbjct: 124 GYDKRQAREHAVNMLKLVGLPRAEEIINEYPFQLSGGMRQRVMIAMAMACRPKLLIADEP 183 Query: 189 TTALDVTIQAQILDLMRELQQTEGMSILMITHDLGVVAEMCDRVVIMYAGQIVEEADVAT 248 TTALDVTIQAQILDLMR+L++ G SI++ITHDLGVVAEMCDRVV+MYAG++VEEADV T Sbjct: 184 TTALDVTIQAQILDLMRKLKEASGTSIMLITHDLGVVAEMCDRVVVMYAGRVVEEADVHT 243 Query: 249 LFGKPLHPYTQGLLASLPQLAGENDRLTSIPGQVPNPANLPSGCRFAPRCPAAVDRCWAE 308 LF KP+HPYTQGLL S+P+L + ++L SIPG VP P +P GC+FA RC + RCW E Sbjct: 244 LFEKPMHPYTQGLLNSIPKLGKKVEKLESIPGNVPTPNEMPKGCKFANRCKLSTKRCWEE 303 Query: 309 RPELLEIRPGHSCRCLLQQE 328 P L ++ H+ RC E Sbjct: 304 EPSLEKLDENHTVRCWFPWE 323 >C0ZB25.1 C0ZB25_BREBN ABC transporter ATP-binding protein Length = 322 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 200/318 (62%), Positives = 240/318 (75%) Query: 10 LLEVSGLCTEFSTAAGTIRAVDGISLSVRKGETLGIVGESGCGKSITSLSIMQLLPKRIS 69 +L++ L T F T G I AVDG++++V+KGE +GIVGESGCGKS+TSLS+M+L+P Sbjct: 5 VLQIENLQTHFFTDRGQIPAVDGVTITVQKGEVVGIVGESGCGKSVTSLSVMKLVPNPPG 64 Query: 70 RIAAGQIRFEGKDMLKMPVKEVRGIRGNRIAMIFQEPMTSLNPVFKIGRQISESARFHLK 129 RI G I+F+G+D++ + K +R IRGN IAMIFQEPMTSLNPVF IG QI ES R H K Sbjct: 65 RIVGGSIKFKGEDLVSVDEKRMRDIRGNEIAMIFQEPMTSLNPVFTIGDQIGESVRLHTK 124 Query: 130 LSKKEADERAVEMLRKVGIPRPEKIAQQYAHQLSGGMRQRVMIAMAMVCSPQLLIADEPT 189 SKK+A RA+EML+KVGIPR + I +Y HQLSGGMRQRVMIAMAM C+P LLIADEPT Sbjct: 125 ASKKDARARAIEMLKKVGIPRADAIVDEYPHQLSGGMRQRVMIAMAMACNPALLIADEPT 184 Query: 190 TALDVTIQAQILDLMRELQQTEGMSILMITHDLGVVAEMCDRVVIMYAGQIVEEADVATL 249 TALDVTIQAQILDLMR+L + SIL+ITHDLGVVAEMC RVV+MYAG ++E+ DV T+ Sbjct: 185 TALDVTIQAQILDLMRQLNREADTSILLITHDLGVVAEMCHRVVVMYAGNVIEQGDVRTI 244 Query: 250 FGKPLHPYTQGLLASLPQLAGENDRLTSIPGQVPNPANLPSGCRFAPRCPAAVDRCWAER 309 P HPYT GLL SLP+L G +RL SIPG VP P +L GCRFAPRC DRC +E Sbjct: 245 LKNPKHPYTIGLLNSLPKLEGSQERLYSIPGNVPIPGSLTVGCRFAPRCDKVSDRCRSEM 304 Query: 310 PELLEIRPGHSCRCLLQQ 327 PEL + H RC L + Sbjct: 305 PELKVVGDNHLSRCWLTE 322 >A6NZV6.1 A6NZV6_9BACE Putative uncharacterized protein Length = 331 Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust. Identities = 190/325 (58%), Positives = 249/325 (76%), Gaps = 1/325 (0%) Query: 5 IKMTE-LLEVSGLCTEFSTAAGTIRAVDGISLSVRKGETLGIVGESGCGKSITSLSIMQL 63 IK+ E +L+V GLCTEF T +RAVDG+ L + GETLGIVGESGCGKS+T+LSIMQL Sbjct: 2 IKLDEPILKVKGLCTEFKTVDSRVRAVDGVDLELYPGETLGIVGESGCGKSVTALSIMQL 61 Query: 64 LPKRISRIAAGQIRFEGKDMLKMPVKEVRGIRGNRIAMIFQEPMTSLNPVFKIGRQISES 123 LPK + ++ GQI F+GKDMLK+ KE+ + G +AMIFQEPMTSLNPV+ IG Q+SE Sbjct: 62 LPKGVGKVVDGQILFDGKDMLKLSTKELLSLHGRDMAMIFQEPMTSLNPVYTIGYQLSEV 121 Query: 124 ARFHLKLSKKEADERAVEMLRKVGIPRPEKIAQQYAHQLSGGMRQRVMIAMAMVCSPQLL 183 R+H+ ++KK+A ++++++L+ VG+ RPE+I + Y H+LSGGM QRVMIAM + C+P+LL Sbjct: 122 LRYHMGMNKKDAWQKSIDLLKDVGVSRPEQIVRSYPHELSGGMLQRVMIAMGLSCNPKLL 181 Query: 184 IADEPTTALDVTIQAQILDLMRELQQTEGMSILMITHDLGVVAEMCDRVVIMYAGQIVEE 243 IADEPTTALDVTIQAQIL+LM +L++ +ILMITH++GVVAE+CDRV++MYAG +VE Sbjct: 182 IADEPTTALDVTIQAQILELMGKLKEEYNTAILMITHNMGVVAEVCDRVIVMYAGYVVEM 241 Query: 244 ADVATLFGKPLHPYTQGLLASLPQLAGENDRLTSIPGQVPNPANLPSGCRFAPRCPAAVD 303 A+V LF P HPYTQGLL +P + + + L +I G VP P +P GCRFAPRCP A Sbjct: 242 AEVNELFDNPSHPYTQGLLKCIPNIDEDREVLDTIEGTVPPPYAMPKGCRFAPRCPYATP 301 Query: 304 RCWAERPELLEIRPGHSCRCLLQQE 328 C A +PEL +I GH+CRC +E Sbjct: 302 ECEANKPELYDIGGGHTCRCFRYKE 326 >C5D5U0.1 C5D5U0_9BACI Oligopeptide/dipeptide ABC transporter, ATPase subunit Length = 341 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 198/317 (62%), Positives = 239/317 (75%), Gaps = 1/317 (0%) Query: 10 LLEVSGLCTEFSTAAGTIRAVDGISLSVRKGETLGIVGESGCGKSITSLSIMQLLPKRIS 69 +LEV GL T F T G I AVDG+ + +GE LG+VGESGCGKS+TSLSIM LLPK + Sbjct: 6 VLEVKGLKTSFFTDEGEIPAVDGVDFYINEGEILGVVGESGCGKSVTSLSIMGLLPKGVG 65 Query: 70 RIAAGQIRFEGKDMLKMPVKEVRGIRGNRIAMIFQEPMTSLNPVFKIGRQISESARFHLK 129 RI G I F+G++++ K ++ IRGN IAMIFQEPMTSLNP+F IG Q+ E+ R H K Sbjct: 66 RIVDGDIIFKGENLVHATEKRMKQIRGNEIAMIFQEPMTSLNPLFTIGDQLIEAIRIHTK 125 Query: 130 LSKKEADERAVEMLRKVGIPRPEKIAQQYAHQLSGGMRQRVMIAMAMVCSPQLLIADEPT 189 +SKKEA RAVEML+ VG+PR E+I +Y HQLSGGMRQRVMIAMAMVC+P LLIADEPT Sbjct: 126 MSKKEAKARAVEMLKLVGLPRAEQIVDEYPHQLSGGMRQRVMIAMAMVCNPSLLIADEPT 185 Query: 190 TALDVTIQAQILDLMRELQQTEGMSILMITHDLGVVAEMCDRVVIMYAGQIVEEADVATL 249 TALDVTIQAQIL LM+EL + SI+MITHDLGVVAE+C+RV++MY+G+IVEE DV T+ Sbjct: 186 TALDVTIQAQILALMKELNKNFRTSIMMITHDLGVVAEVCERVIVMYSGKIVEEGDVRTI 245 Query: 250 FGKPLHPYTQGLLASLPQLAGENDRLTSIPGQVPNPANLPSGCRFAPRCPAAVDRCWAER 309 F P HPYT GL+ S+P + + +RL SIPG VP P ++ GCRFA RC A DRC+ E Sbjct: 246 FKNPKHPYTIGLIQSVPDIRTKKERLYSIPGNVPKPGSVRQGCRFAARCEYAFDRCFHED 305 Query: 310 PELLEI-RPGHSCRCLL 325 PEL E GH RC L Sbjct: 306 PELYEAGERGHRVRCFL 322 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,819,623,148 Number of extensions: 72797797 Number of successful extensions: 493420 Number of sequences better than 1.0e-05: 87023 Number of HSP's gapped: 382970 Number of HSP's successfully gapped: 93853 Length of query: 331 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 195 Effective length of database: 1,779,438,163 Effective search space: 346990441785 Effective search space used: 346990441785 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)