BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0040.p (427 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1HY02.1 B1HY02_LYSSC Succinyl-diaminopimelate desuccinylase EC=... 446 e-123 A3IEF8.1 A3IEF8_9BACI Putative uncharacterized protein 442 e-122 Q5WKJ5.1 Q5WKJ5_BACSK Putative uncharacterized protein 439 e-121 C0CN59.1 C0CN59_9FIRM Putative uncharacterized protein 267 1e-69 A8RLN2.1 A8RLN2_9CLOT Putative uncharacterized protein 266 3e-69 >B1HY02.1 B1HY02_LYSSC Succinyl-diaminopimelate desuccinylase EC=3.5.1.18 Length = 422 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 214/416 (51%), Positives = 288/416 (69%), Gaps = 4/416 (0%) Query: 5 KSKVLSAIDAXXXXXXXXXXXXIRFPSENPPGDSRDISSFIMEYLKQAGIDTEVHPATET 64 K K++ ++ I+ PS NPPGD+ +I++FI YL GI + + AT+ Sbjct: 8 KMKLVDEVENHQAELIDFCSKLIQIPSVNPPGDTTEITAFIERYLNDVGIVYQKYEATDK 67 Query: 65 MLNLVSTLKTGAAEPSDKKLIFCGHTDVVPAGDRSRWDFDPFCGDIVDGYLLGRGASDMK 124 M NLV+++ + K+LI+CGHTDVVP GD S+WDF+PF G++ DG++LGRGASDMK Sbjct: 68 MFNLVASI----GKDEGKELIYCGHTDVVPVGDLSKWDFNPFSGEVKDGWMLGRGASDMK 123 Query: 125 AGLAGLIYAMGLLSRLGVPLRGDLALLVVPDEETGGHLGVPWVLERELVTGTAAVIAEPS 184 AGLAG+I+A LL +L + L G L L +VPDEETGG GVPW+LER L+ G +IAEPS Sbjct: 124 AGLAGIIFATKLLKKLNIELPGKLTLAIVPDEETGGEYGVPWLLERGLIKGDGCLIAEPS 183 Query: 185 GPLNPTIGQKGSCWFEFTVEGTPGHGSLAPVVGESAIVKAAKGIEALQRLWDIKPDIPEE 244 PLNPTIGQKGS WFE V G PGHGSL+P+ G +AI A + I+ ++ LWD+ IPEE Sbjct: 184 SPLNPTIGQKGSFWFELEVHGEPGHGSLSPLAGRNAINDAIRAIQEIRTLWDMNIVIPEE 243 Query: 245 VQEIIRISQDYVKEREQDGSIAYQVFDHVTVNIGTIQGGTKVNVVADRCTVQVDSRVPFG 304 VQ +I +S+ Y++E E+D +V + +TVNIGTI+GGTK NV+ D C VQVD R+PFG Sbjct: 244 VQSLIEVSKKYMREVEKDRLKYQEVLEKITVNIGTIEGGTKSNVIPDYCKVQVDCRLPFG 303 Query: 305 VDYRDVLDRARSLLLEAGIESEVKGFGFQGNANWTSTEEPIVSNLVESICEVSGEEAYGV 364 + +V + ++ L IE ++ FGF+ AN+T E P+ ++VE+I V+G EAYGV Sbjct: 304 ITQEEVTEILKNKLDALDIEYSIRRFGFKSVANYTPAENPVCQSIVENISFVTGLEAYGV 363 Query: 365 LQWASSDARHFRTHQIPVLQYGPAELSTIHNFNEKAPVWQIIQCAKVYALTALKYL 420 +QWASSDARHFR + IPVLQYGPA L +IH +NEK V I++CAKVY A+ +L Sbjct: 364 MQWASSDARHFRQYDIPVLQYGPAYLPSIHGYNEKVRVEDIVRCAKVYITAAIDFL 419 >A3IEF8.1 A3IEF8_9BACI Putative uncharacterized protein Length = 422 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 211/394 (53%), Positives = 280/394 (71%), Gaps = 4/394 (1%) Query: 27 IRFPSENPPGDSRDISSFIMEYLKQAGIDTEVHPATETMLNLVSTLKTGAAEPSDKKLIF 86 I+ PS NPPGD+ +I++FI YL GI + + A + M NLV+++ G K+L++ Sbjct: 30 IQIPSVNPPGDTTEITAFIEHYLNDVGIAYQKYEAADKMFNLVASIGNGEG----KELVY 85 Query: 87 CGHTDVVPAGDRSRWDFDPFCGDIVDGYLLGRGASDMKAGLAGLIYAMGLLSRLGVPLRG 146 CGHTDVVP GD S+WDFDPF G++ DG++LGRGASDMKAGLAG+I+A LL +L + L G Sbjct: 86 CGHTDVVPVGDLSKWDFDPFSGEVKDGWMLGRGASDMKAGLAGIIFATKLLKKLNIELPG 145 Query: 147 DLALLVVPDEETGGHLGVPWVLERELVTGTAAVIAEPSGPLNPTIGQKGSCWFEFTVEGT 206 L L +VPDEETGG GVPW+LER LV G +IAEPS PLNPTIGQKGS WFE V G Sbjct: 146 KLTLAIVPDEETGGEFGVPWLLERGLVKGDGCLIAEPSSPLNPTIGQKGSYWFELEVHGE 205 Query: 207 PGHGSLAPVVGESAIVKAAKGIEALQRLWDIKPDIPEEVQEIIRISQDYVKEREQDGSIA 266 PGHGSL+P+ G +AI A + I+ ++ LWD+ IPEEVQ +I +S+ Y++E E+D Sbjct: 206 PGHGSLSPLAGRNAINDAIRAIQEIRTLWDMNIVIPEEVQPLIEVSKKYMREVEKDRLKY 265 Query: 267 YQVFDHVTVNIGTIQGGTKVNVVADRCTVQVDSRVPFGVDYRDVLDRARSLLLEAGIESE 326 +V + +TVNIGTI+GGTK NV+ D C VQVD R+PFG+ +V + ++ L IE Sbjct: 266 QEVLEKITVNIGTIEGGTKSNVIPDYCKVQVDCRLPFGITQEEVTEILKNKLDALDIEYS 325 Query: 327 VKGFGFQGNANWTSTEEPIVSNLVESICEVSGEEAYGVLQWASSDARHFRTHQIPVLQYG 386 ++ FGF+ AN+T E + ++V++I V+G EAYGV+QWASSDARHFR + IPVLQYG Sbjct: 326 IRRFGFKSVANYTPAENLVCQSIVDNISFVTGLEAYGVMQWASSDARHFRQYDIPVLQYG 385 Query: 387 PAELSTIHNFNEKAPVWQIIQCAKVYALTALKYL 420 PA L +IH +NEK V I++CAKVY A+ +L Sbjct: 386 PAYLPSIHGYNEKVRVEDIVRCAKVYITAAIDFL 419 >Q5WKJ5.1 Q5WKJ5_BACSK Putative uncharacterized protein Length = 417 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 210/416 (50%), Positives = 285/416 (68%), Gaps = 4/416 (0%) Query: 5 KSKVLSAIDAXXXXXXXXXXXXIRFPSENPPGDSRDISSFIMEYLKQAGIDTEVHPATET 64 K +++ A++ I+ +ENPPGD+ +IS FI +YL + GID H + E Sbjct: 4 KDELIVAVEENKQELIDLVCSLIQINTENPPGDTTEISRFIADYLGKDGIDVTWHQSNEQ 63 Query: 65 MLNLVSTLKTGAAEPSDKKLIFCGHTDVVPAGDRSRWDFDPFCGDIVDGYLLGRGASDMK 124 M NL++++ E K+LI+CGHTDVVPAGDR +W FDPF G + DG++LGRGASDMK Sbjct: 64 MYNLIASI----GEEGGKELIYCGHTDVVPAGDRDKWSFDPFSGIVEDGWILGRGASDMK 119 Query: 125 AGLAGLIYAMGLLSRLGVPLRGDLALLVVPDEETGGHLGVPWVLERELVTGTAAVIAEPS 184 AGL GL++A LL R+GV L G L L +VPDEETGG GVPW+LER L+ G +IAEPS Sbjct: 120 AGLGGLLFATALLKRMGVKLPGKLTLAIVPDEETGGEYGVPWLLERGLIKGDGCLIAEPS 179 Query: 185 GPLNPTIGQKGSCWFEFTVEGTPGHGSLAPVVGESAIVKAAKGIEALQRLWDIKPDIPEE 244 L+PTIGQKGSCWF+ V G GHGSL+P+ G +AI A K I A++ ++DI DIPEE Sbjct: 180 SRLHPTIGQKGSCWFKLDVYGEAGHGSLSPLAGRNAITDAIKAIAAIRTVFDIDVDIPEE 239 Query: 245 VQEIIRISQDYVKEREQDGSIAYQVFDHVTVNIGTIQGGTKVNVVADRCTVQVDSRVPFG 304 V+ ++ +S+ Y++E E + ++ + ++VNIGTI GGTK NV+ D CTV+VD R+PFG Sbjct: 240 VKPLLAVSRKYMEEVEVEREKYKEILEKISVNIGTIHGGTKSNVIPDTCTVEVDCRLPFG 299 Query: 305 VDYRDVLDRARSLLLEAGIESEVKGFGFQGNANWTSTEEPIVSNLVESICEVSGEEAYGV 364 + ++V + L E GI+ + FGF+ NAN T +P+ + ++ +I V+ EEAYGV Sbjct: 300 ITQKEVYAYIEARLDELGIDYAITPFGFRSNANHTPATDPVCTAIINNISYVTKEEAYGV 359 Query: 365 LQWASSDARHFRTHQIPVLQYGPAELSTIHNFNEKAPVWQIIQCAKVYALTALKYL 420 +QWASSDARHFR H IPVLQYGPA L +IHNF+EK V ++ CAKVY + +L Sbjct: 360 MQWASSDARHFRDHHIPVLQYGPAYLPSIHNFDEKVKVEDVVLCAKVYVAAVIDFL 415 >C0CN59.1 C0CN59_9FIRM Putative uncharacterized protein Length = 419 Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 152/404 (37%), Positives = 222/404 (54%), Gaps = 19/404 (4%) Query: 27 IRFPSENPPGDSRDISSFIMEYLKQAGIDTEV------HPATETMLNLVSTLKTGAAEPS 80 I+ PSENP G RD+ F+ +YL +AGI E HP K G E Sbjct: 28 IKIPSENPIGTQRDVVDFVKKYLSEAGIACEEVGCNPEHPCV--------VAKIGKEEGF 79 Query: 81 DKKLIFCGHTDVVPAGDRSRWDFDPFCGDIVDGYLLGRGASDMKAGLAGLIYAMGLLSRL 140 +I GH DVVPAGDR++WDFDPF G+I D +LGRG SDMKAG+AG+++AM L Sbjct: 80 --SVILNGHVDVVPAGDRNQWDFDPFSGEITDKCILGRGTSDMKAGVAGILFAMKTLVEA 137 Query: 141 GVPLRGDLALLVVPDEETGGHLGVPWVLERELV-TGTAAVIAEPSGPLNPTIGQKGSCWF 199 GV L G++ L +V DEE+GG G W+ A ++AEP+ IGQKG Sbjct: 138 GVELNGNIRLHIVSDEESGGEYGTQWLCANGYAENADACLVAEPTSHKTIEIGQKGKIDL 197 Query: 200 EFTVEGTPGHGSLAPVVGESAIVKAAKGIEALQRLWDIKPDIPEEVQEIIRISQDYVKER 259 G HGSLA GE+AI+K K +E + L +I+ E ++ + S+ + Sbjct: 198 ILKSYGKSAHGSLAGYRGENAILKLGKVLEHVDMLREIEGKYGENQKQALINSK--IIAG 255 Query: 260 EQDGSIAYQVFDHVTVNIGTIQGGTKVNVVADRCTVQVDSRVPFGVDYRDVLDRARSLLL 319 E++G+ V DHV+ N+G I+GGT+ N+V D C VD R+P GV +V +R ++++ Sbjct: 256 EKNGAGTGDVIDHVSANVGIIKGGTRPNMVPDYCEAIVDLRLPIGVTIEEVEERIKAMIA 315 Query: 320 EAGIESEVKGFGFQGNANWTSTEEPIVSNLVESICEVSGEEAYGVLQWASSDARHFRTHQ 379 ++G+E G Q N+T + PIV + + E+ EE QWASSDAR +R Sbjct: 316 KSGVEGVEYELGCQMLGNYTEIDAPIVEAIKKYAEELWQEEVLPAYQWASSDARDYRQKG 375 Query: 380 IPVLQYGPAELSTIHNFNEKAPVWQIIQCAKVYALTALKYLGVE 423 IP +Q+GP+ IH++NE + + + +Y L+ +G++ Sbjct: 376 IPTIQFGPSNTVGIHSYNETVDIEDVQKAGLIYILSLCDLMGID 419 >A8RLN2.1 A8RLN2_9CLOT Putative uncharacterized protein Length = 417 Score = 266 bits (680), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 147/420 (35%), Positives = 221/420 (52%), Gaps = 6/420 (1%) Query: 5 KSKVLSAIDAXXXXXXXXXXXXIRFPSENPPGDSRDISSFIMEYLKQAGIDTEVHPATET 64 K ++S ++ IR SENP G R++ F+ +YL++AGI E Sbjct: 3 KENLISMVEDRKDELIDLVSRLIRINSENPTGTQREVVDFVEKYLEKAGIAYEETGENPD 62 Query: 65 MLNLVSTLKTGAAEPSDKKLIFCGHTDVVPAGDRSRWDFDPFCGDIVDGYLLGRGASDMK 124 +V+ + + LIF GH DVVPAGDR WDFDPFCG + D +LGRG SDMK Sbjct: 63 YPCVVARMGS----DDGYSLIFNGHVDVVPAGDRGLWDFDPFCGTVTDSQILGRGTSDMK 118 Query: 125 AGLAGLIYAMGLLSRLGVPLRGDLALLVVPDEETGGHLGVPWVLERELVTG-TAAVIAEP 183 AG+AG+++AM LL V L+G++ L +V DEE+GG G W+ E G ++AEP Sbjct: 119 AGVAGVLFAMALLKESNVCLKGNIRLHIVSDEESGGEYGSAWLCEHGYAKGANGCLVAEP 178 Query: 184 SGPLNPTIGQKGSCWFEFTVEGTPGHGSLAPVVGESAIVKAAKGIEALQRLWDIKPDIPE 243 + IGQKG G HGSL GE+AI+K AK + +++L I + Sbjct: 179 TSMATIEIGQKGGMLLTIRAHGKAAHGSLGNYKGENAILKMAKVLPLVEKLTRISGHFSD 238 Query: 244 EVQEIIRISQDYVKEREQDGSIAYQVFDHVTVNIGTIQGGTKVNVVADRCTVQVDSRVPF 303 + + S+ +++ + + V DHVT NIG IQGGT+ N+V D C VD R+P Sbjct: 239 RQLKPLADSKMIAEDKNEIPGLG-SVIDHVTTNIGLIQGGTRHNMVPDCCEAVVDCRLPI 297 Query: 304 GVDYRDVLDRARSLLLEAGIESEVKGFGFQGNANWTSTEEPIVSNLVESICEVSGEEAYG 363 GV ++ + E+G++ ++ N+T E+P+V + +++ G + Sbjct: 298 GVSQDEIAACVEEIRRESGVDGVDFELNYRSEPNFTDHEDPLVLAVKKNVEAFLGTQVVP 357 Query: 364 VLQWASSDARHFRTHQIPVLQYGPAELSTIHNFNEKAPVWQIIQCAKVYALTALKYLGVE 423 QWASSDAR +R IP +Q+GP+ IH++NE + ++ AK Y +G+E Sbjct: 358 AYQWASSDARDYRRQGIPTIQFGPSNTVGIHSYNETVEIEDVVTAAKAYVAAVCDLMGIE 417 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,662,023,286 Number of extensions: 116890717 Number of successful extensions: 270304 Number of sequences better than 1.0e-05: 2676 Number of HSP's gapped: 267710 Number of HSP's successfully gapped: 2681 Length of query: 427 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 288 Effective length of database: 1,751,175,118 Effective search space: 504338433984 Effective search space used: 504338433984 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)