BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0039.p (466 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0CUY6.1 C0CUY6_9CLOT Putative uncharacterized protein 411 e-113 A6NZV4.1 A6NZV4_9BACE Putative uncharacterized protein 350 3e-94 A6NZV5.1 A6NZV5_9BACE Putative uncharacterized protein 342 5e-92 B9L4I5.1 B9L4I5_THERP Heme-binding protein A (Hemin-binding lipo... 244 2e-62 Q988N0.1 Q988N0_RHILO Oligopeptide ABC transporter, periplasmic ... 241 2e-61 >C0CUY6.1 C0CUY6_9CLOT Putative uncharacterized protein Length = 555 Score = 411 bits (1056), Expect = e-113, Method: Compositional matrix adjust. Identities = 209/468 (44%), Positives = 290/468 (61%), Gaps = 6/468 (1%) Query: 2 TSDTLVLAAYDQLVTYGIKS-DNGANIANTEDIKPMLAESWEVSSDNTVYTFKLKSGVKF 60 TS + AAYDQLVTYG K+ D G +A+T DI+P LA+SWEVS D Y L KF Sbjct: 87 TSAEFINAAYDQLVTYGSKTNDQGYEMADTSDIQPSLAKSWEVSEDGLTYVIHLDENAKF 146 Query: 61 QSGNPVDADSVVYSLDRVAKSSSGSFLYGMAAIKTVTAKDDSTVEIALTNANHNFLQILA 120 +G+PV AD+V+YS +R+ S+ FLY +A I T+ DD TV L+ F +L Sbjct: 147 ANGDPVTADAVIYSFNRIKDSNYTGFLYSLANIDTMEKTDDLTVTFKLSKPCTIFFNLLQ 206 Query: 121 MYTFSIVDKKTVEAQGAD----YLKTHAAGSGPFTLEKWDPATEAVFTPNDDYWQGAPKL 176 M+ FSIV+ +E + +L T GSG F +EKWD TE + DYW+G L Sbjct: 207 MHIFSIVNPNQLEGMSEEEIDTFLTTTTVGSGAFDIEKWDATTEVILNARPDYWKGKVDL 266 Query: 177 GKVTMKFTKEASNRVLLLNKGDVDMAIEIPPKDVDTLKSNSNLTVASNASNRILYFAMNN 236 KV +K E SNRVLL +KGDVD+A IPPKD+ L+ N++L + S I+Y ++N Sbjct: 267 DKVIVKIIPEPSNRVLLADKGDVDIARVIPPKDLSKLEGNTDLDIRVYESVSIVYLSLNT 326 Query: 237 KVKPFDNEKVRQAINYAIPYDELLTGVMYGQAKQMKSSVASNTPG-FSDAGYVYEHNLDK 295 + P DN KVRQA+NYA+PYD ++ VM G+AK++ + S PG +D Y +LDK Sbjct: 327 QKAPLDNVKVRQALNYAVPYDVIVNDVMSGKAKKLDYVIPSAMPGHITDTTGAYTQDLDK 386 Query: 296 AKALLKEAGYEKGFTFDFTLGSGFDDWEDDAVLIQAELAKIGVTMNINKLARAQFLEQQK 355 AKALL EAGY GF + +G D+ED A+L+QAELAKIGV ++I K+ RAQ+LE + Sbjct: 387 AKALLAEAGYADGFDMKLVISTGNQDYEDTAILVQAELAKIGVNLSIEKMERAQYLEATR 446 Query: 356 TKNLTAYISKWTSFVNDPGYHLGFLMYGKGSSNYNNYQNAEVDKLWEQANTETDAAKRAE 415 + N IS ++SFVNDPGY G +Y +G NY +Y++ EVD +W++A + D +R E Sbjct: 447 SHNFDMAISSYSSFVNDPGYFFGNCLYSQGEYNYGSYKSDEVDGIWDKAESSNDLNERYE 506 Query: 416 LYKQAQEIITTEAPWAYLYEYNRIVGMSNKISGYAFYPDEVIRFYPLS 463 LY +AQ+I+ +APW LYE I ++ + + +YPD +RF +S Sbjct: 507 LYTEAQKIVAEDAPWVPLYEKANIYVLNKNVKSFMYYPDGAVRFAQIS 554 >A6NZV4.1 A6NZV4_9BACE Putative uncharacterized protein Length = 542 Score = 350 bits (897), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 190/470 (40%), Positives = 274/470 (58%), Gaps = 9/470 (1%) Query: 2 TSDTLVLAAYDQLVTYGIKSD-NGANIANTEDIKPMLAESWEVSSDNTVYTFKLKSGVKF 60 T+ AAYD+LV Y +D NG +A+T +++ ++AESWE S D +TF + F Sbjct: 72 TTSAFQYAAYDRLVQYKTTTDANGNAVADTANLEGVIAESWETSEDQLTWTFHIDPDATF 131 Query: 61 QSGNPVDADSVVYSLDRVAKSSSGSFLYGMAAIKTVTAKDDSTVEIALTNANHNFLQILA 120 +G+ V A+ V++S + ++ SFL+G+ I + A DD+TV L+ +H FL++L Sbjct: 132 ANGDKVLAEDVIWSYEHARDGANSSFLFGLTNIIDMQAPDDATVVFTLSQKSHMFLRLLE 191 Query: 121 MYTFSIVDKKTVEA---QGADYLKTHAAGSGPFTLEKWDPATEAVFTPNDDYWQGAPKLG 177 Y F IV+K EA + DYL TH AGSGP+ + +D + V T DDYW G ++ Sbjct: 192 TYPFCIVNKDEAEAGMAEDPDYLTTHTAGSGPYEITTYDITSSVVLTARDDYW-GDKRVA 250 Query: 178 K---VTMKFTKEASNRVLLLNKGDVDMAIEIPPKDVDTLKSNSNLTVASNASNRILYFAM 234 K VT + +E SNR +LL GDVD+A+ + K+++T+ + V NASN LY AM Sbjct: 251 KNDTVTWQLVQEPSNRQMLLQNGDVDVALNLDDKNINTVAEMDGIQVVKNASNMHLYLAM 310 Query: 235 NNKVKPFDNEKVRQAINYAIPYDELLTGVMYGQAKQMKSSVASNTPG-FSDAGYVYEHNL 293 N ++PFDN VRQAI AIPYD L+ VM+G A + S + N G SD Y+ ++ Sbjct: 311 NVNIEPFDNVLVRQAIACAIPYDTLVNDVMFGNAVRTTSMLPDNVSGHISDDKTCYQTDI 370 Query: 294 DKAKALLKEAGYEKGFTFDFTLGSGFDDWEDDAVLIQAELAKIGVTMNINKLARAQFLEQ 353 +KAK LL EAGY GF+ LG+GF DW+D A+ IQ L+KIG+TM IN++ RA FL + Sbjct: 371 EKAKELLAEAGYPDGFSCTLMLGNGFTDWKDTAITIQDALSKIGITMEINEIDRATFLTE 430 Query: 354 QKTKNLTAYISKWTSFVNDPGYHLGFLMYGKGSSNYNNYQNAEVDKLWEQANTETDAAKR 413 K++ +I+++ FV DPGY L S NY NY N E D+L+++A +R Sbjct: 431 IADKDVPLFINRYNPFVGDPGYVANNLYVTGASFNYENYSNPEFDELFKKAEAADTEEER 490 Query: 414 AELYKQAQEIITTEAPWAYLYEYNRIVGMSNKISGYAFYPDEVIRFYPLS 463 + YK+ Q I + P LY+Y + +SGY F PD +RF LS Sbjct: 491 LDYYKEMQYIFAEDCPVVQLYQYGFAYCARDNVSGYVFLPDLTLRFEYLS 540 >A6NZV5.1 A6NZV5_9BACE Putative uncharacterized protein Length = 544 Score = 342 bits (877), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 196/469 (41%), Positives = 273/469 (58%), Gaps = 8/469 (1%) Query: 2 TSDTLVLAAYDQLVTYGIKSD-NGANIANTEDIKPMLAESWEVSSDNTVYTFKLKSGVKF 60 T+ AAY++LV Y +D NG +A+T ++ +AESWE S D +TF L F Sbjct: 75 TTSAFQYAAYERLVKYATTTDENGNAVADTSNLVGAIAESWETSEDQLTWTFHLNPDATF 134 Query: 61 QSGNPVDADSVVYSLDRVAKSSSGSFLYGMAAIKTVTAKDDSTVEIALTNANHNFLQILA 120 +G+ V A V++S ++ +++ SF + + I + A DD TV L+ +H FL++L Sbjct: 135 ANGDKVLASDVIWSFEQCQANANSSFFFTLTNIVDMQAPDDETVVFTLSQKSHMFLRLLE 194 Query: 121 MYTFSIVDKKTVEA---QGADYLKTHAAGSGPFTLEKWDPATEAVFTPNDDYWQGA--PK 175 +Y F IV++ EA + DYL TH AGSGP+ + +D V T DDYW GA P Sbjct: 195 IYPFCIVNQDEAEAGIAEDPDYLTTHTAGSGPYEITTYDITNSVVLTARDDYW-GADKPA 253 Query: 176 LGKVTMKFTKEASNRVLLLNKGDVDMAIEIPPKDVDTLKSNSNLTVASNASNRILYFAMN 235 VT + +E SNR LLL GDVD+A+ + K+++T+ + V NASN LY AMN Sbjct: 254 NDSVTWQLVQEPSNRQLLLENGDVDVALNLDDKNINTVAEMDGIQVVKNASNMHLYLAMN 313 Query: 236 NKVKPFDNEKVRQAINYAIPYDELLTGVMYGQAKQMKSSVASNTPG-FSDAGYVYEHNLD 294 ++PFDN VRQAI YAIPYD L+ VM+G A + S + N G SD Y+ +L+ Sbjct: 314 LNIEPFDNVLVRQAIAYAIPYDTLVNDVMFGNATRTTSMLPDNVTGHISDDKTCYQTDLE 373 Query: 295 KAKALLKEAGYEKGFTFDFTLGSGFDDWEDDAVLIQAELAKIGVTMNINKLARAQFLEQQ 354 KAK LL EAGY GFT TLG+GF DW+D A+ IQ L+KIG+TM IN++ RA FL + Sbjct: 374 KAKELLAEAGYPDGFTCTLTLGNGFTDWKDTAITIQDALSKIGITMEINEIDRATFLTEI 433 Query: 355 KTKNLTAYISKWTSFVNDPGYHLGFLMYGKGSSNYNNYQNAEVDKLWEQANTETDAAKRA 414 KN +I+++ F+ DPGY + L + + NYNNY N E D L+ Q + +R Sbjct: 434 ANKNTALFINRFNPFIGDPGYLVNNLYVNEAAYNYNNYNNEEFDALYFQGESADTEEERM 493 Query: 415 ELYKQAQEIITTEAPWAYLYEYNRIVGMSNKISGYAFYPDEVIRFYPLS 463 E YK+ Q I + P LY+Y+ + ISGY FYPD +RF LS Sbjct: 494 ECYKEMQYIYAEDCPSVQLYQYDFAYCARDNISGYVFYPDLTLRFEFLS 542 >B9L4I5.1 B9L4I5_THERP Heme-binding protein A (Hemin-binding lipoprotein) Length = 557 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 143/446 (32%), Positives = 222/446 (49%), Gaps = 19/446 (4%) Query: 32 DIKPMLAESWEVSSDNTVYTFKLKSGVKFQSGNPVDADSVVYSLDRVAKSS-----SGSF 86 +++P LAE W+VSSD Y F L+SG+ F G P DAD+VV+S+ R + +G F Sbjct: 105 ELEPGLAEKWDVSSDGLTYRFSLRSGITFHDGTPFDADAVVFSILRQIDPNHPYHDTGEF 164 Query: 87 LYG---MAAIKTVTAKDDSTVEIALTNANHNFLQILAMYTFSIVDKKTVEAQGADYLKTH 143 Y +++V A D TVEI L FL +A++ SIV V+ G D+ K + Sbjct: 165 AYAEFTFGKVQSVKAVDPQTVEIVLKEPYAPFLSNVAIHAASIVSPAAVQKYGRDFSK-N 223 Query: 144 AAGSGPFTLEKWDPATEAVFTPNDDYWQGAPKLGKVTMKFTKEASNRVLLLNKGDVDMAI 203 G+GPF +W P E + N ++W G P++ ++ + E R+ G +D + Sbjct: 224 PVGTGPFRFVEWKPGVEVILERNPNWWGGQPQVERLIFRPIIEDRARLTEFEAGSIDFIV 283 Query: 204 EIPPKDVDTLKSNSNLTVASNASNRILYFAMNNKVKPFDNEKVRQAINYAIPYDELLTGV 263 IPP D+ LK + N+TV + Y N + +PF+ ++VRQA+NYAI + ++ + Sbjct: 284 NIPPDDLPRLKQSPNVTVLEQPGMHVWYIVFNCRREPFNKKEVRQAVNYAINKEAIVNEL 343 Query: 264 MYGQAKQMKSSVASNTPGFSDAGYVYEHNLDKAKALLKEAGYEKGFTFDFTL---GSGFD 320 + G K + G++DA Y ++ KAK LL +AGY GF F + GSG Sbjct: 344 LKGTGVLAKGPLPPVVWGYTDAVPDYRYDPAKAKELLAQAGYPNGFKVTFWVPESGSGMQ 403 Query: 321 DWEDDAVLIQAELAKIGVTMNINKLARAQFLEQ---QKTKNLTAYISKWTSFVNDPGYHL 377 + IQA+L +G+ I +L++ + + W DP L Sbjct: 404 QPKAMGAAIQADLRAVGIEAEIQTFEWGTYLDKVLGNPDELPEMFEMSWIGDNGDPDNFL 463 Query: 378 GFLMYGKG----SSNYNNYQNAEVDKLWEQANTETDAAKRAELYKQAQEIITTEAPWAYL 433 L+ G N Y+N +VD+L QA D AKR +LY+QA +++ +APWA++ Sbjct: 464 FILLSGDAWPPNGFNMGYYKNEQVDELLRQAQRLNDRAKREQLYQQALKLLVEDAPWAWI 523 Query: 434 YEYNRIVGMSNKISGYAFYPDEVIRF 459 +IV M I G+ +P V RF Sbjct: 524 DHETQIVAMKKFIQGFKLHPTGVFRF 549 >Q988N0.1 Q988N0_RHILO Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein Length = 513 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 154/459 (33%), Positives = 229/459 (49%), Gaps = 23/459 (5%) Query: 5 TLVLAAYDQLVTYGIKSDNGANIANTEDIKPMLAESWEVSSDNTVYTFKLKSGVKFQSGN 64 T + AAY+ LV Y GA T ++ P LAESW V NTV+TFKL G KF G Sbjct: 53 TFIYAAYEHLVAY-----KGA----TTEVVPELAESWSVDDTNTVWTFKLAQGHKFDDGT 103 Query: 65 PVDADSVVYSLDRVAKSSSGSFLYGMAAIKTVTAKDDSTVEIALTNANHNFLQILAMYTF 124 PVDA +V +S DR K +G +K V D TV+ L++ FL +A+ Sbjct: 104 PVDAAAVKFSFDRAMKLKAGPS-DAFPVLKEVQVVDPGTVKFILSSQFAPFLSTMAVSGA 162 Query: 125 SIVDKKTVEAQ-----GADYLKTHAAGSGPFTLEKWDPATEAVFTPNDDYWQGAPKLGKV 179 +I++ K +E + +L H AGSG + + W+ V N+ Y P L ++ Sbjct: 163 AIINPKVMEHEKDGDMAKAWLAEHTAGSGAYKITSWERNQSVVLDRNEHYAGSTPALKQI 222 Query: 180 TMKFTKEASNRVLLLNKGDVDMAIEIPPKDVDTLKSNSNLTVASNASNRILYFAMNNKVK 239 ++ E S R L L GD D+ ++P LK + N+ V SN S + Y MNNK Sbjct: 223 VVRTVGEISARRLQLVNGDADIIEQVPVDQAAALKGDPNIVVESNPSLYVNYVYMNNKRP 282 Query: 240 PFDNEKVRQAINYAIPYDELLTGVMYGQAKQMKSSVASNTPGFSDAGYVYEHNLDKAKAL 299 P D+ +VRQAI+YA+ Y ++ G+M GQA+QM+ +V G+ Y ++++KAKAL Sbjct: 283 PLDDARVRQAISYAVDYKGIVDGIMQGQAEQMRGAVPDGMWAHDPNGFQYSYDVEKAKAL 342 Query: 300 LKEAGYEKGFTFDFTLGSGFDDWEDDAVLIQAELAKIGVTMNINKLARAQFLEQQKTKNL 359 LKEAG + +T WE + +QA LA IG+ +++ +A E + N Sbjct: 343 LKEAG-KSDIHLTYTFSQADTAWEPVGLALQANLADIGIKLDLQAVADTTKREMAASGNY 401 Query: 360 TAYISKWTSFVNDPGYHLGFL-----MYGKGSSNYNNYQNAEVDKLWEQANTETDAAKRA 414 WT DP + + M G G+ + Y N +V L +A + D KR Sbjct: 402 DLAPGAWTPDFADPYMFMNYWFDPDRMGGPGNRAF--YNNPKVAGLVREAASIIDQPKRE 459 Query: 415 ELYKQAQEIITTEAPWAYLYEYNRIVGMSNKISGYAFYP 453 +LY +AQ++ T +AP+ YL + N I + GY + P Sbjct: 460 QLYLEAQKLSTQDAPYLYLMQKNDIFARRAVVKGYVYNP 498 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.130 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,722,822,264 Number of extensions: 111460033 Number of successful extensions: 266559 Number of sequences better than 1.0e-05: 7050 Number of HSP's gapped: 248409 Number of HSP's successfully gapped: 7137 Length of query: 466 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 327 Effective length of database: 1,751,175,118 Effective search space: 572634263586 Effective search space used: 572634263586 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)