BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0038.p (299 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6NZV3.1 A6NZV3_9BACE Putative uncharacterized protein 326 2e-87 C1TNS8.1 C1TNS8_9BACT ABC-type dipeptide/oligopeptide/nickel tra... 305 3e-81 C0CUY5.1 C0CUY5_9CLOT Putative uncharacterized protein 296 2e-78 A4J7A9.1 A4J7A9_DESRM Binding-protein-dependent transport system... 295 4e-78 C0Z967.1 C0Z967_BREBN ABC transporter permease protein 290 1e-76 >A6NZV3.1 A6NZV3_9BACE Putative uncharacterized protein Length = 295 Score = 326 bits (835), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 166/275 (60%), Positives = 212/275 (77%), Gaps = 3/275 (1%) Query: 26 RLLLHNRLAAIGLVLIVIWTVTALIAPWIAPHDPYLTDMANKLQAPSG--SHWFGTDNFG 83 ++ N+LA +GL I+ W + A++AP IAP +P D A Q P G H GTD +G Sbjct: 21 QIFCRNKLAVVGLCFILFWVIMAVLAPVIAPFEPNALDYAVS-QKPPGYEGHLLGTDQYG 79 Query: 84 RDIFSRVLYGARISIWTGLIAVAISFLIGVPLGGVAAYYGGRTGTIIMRLMDVLLSFPSL 143 RDI +RVLYGARIS+W G+I+V IS +IG LGG+A YYGG +IMR+MD + +FPSL Sbjct: 80 RDILTRVLYGARISMWCGVISVGISLVIGTVLGGIAGYYGGAVSIVIMRVMDAMCAFPSL 139 Query: 144 VLSMAIAASIGAGLTSAMIAVGIVGIPEFARLMFGQTVSLREKEYVEASRAIGVKNSVIL 203 VL++ IAA+IG G SAM+AVGIV IP++ARLMF +T S+R + Y+EA AIG+KNS ++ Sbjct: 140 VLAIVIAAAIGKGTVSAMLAVGIVSIPDYARLMFAETSSIRGRPYIEAGVAIGLKNSQLI 199 Query: 204 YRHILPNALAPLMVQATLGMGFAILTASSLSFLGLGVKPPIAEWGAMISEGREYIISGQW 263 +RH+LPN ++ L+V+ATLG+GFAILT SSLSFLG+GV+PP AEWG MISE R YIISGQW Sbjct: 200 FRHVLPNCMSQLLVKATLGLGFAILTVSSLSFLGMGVQPPTAEWGNMISEARSYIISGQW 259 Query: 264 WLVTFPGLGIATSILGFNLLGDGFRDVLDPRLRSG 298 W+ TFPGL I TSILGFNL+GDG RD+LDPR R+G Sbjct: 260 WMATFPGLAIMTSILGFNLVGDGVRDILDPRNRTG 294 >C1TNS8.1 C1TNS8_9BACT ABC-type dipeptide/oligopeptide/nickel transport system, permease component Length = 295 Score = 305 bits (781), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 145/275 (52%), Positives = 202/275 (73%), Gaps = 1/275 (0%) Query: 23 TLIRLLLHNRLAAIGLVLIVIWTVTALIAPWIAPHDPYLTDMANKLQAPSGSHWFGTDNF 82 + R L NRLA IGL ++++ TA+ A +IAP+ D+ ++PS +HWFGTD F Sbjct: 22 EVFRRLKKNRLAMIGLFVVIVLAFTAIFADFIAPYTYEEQDLMAAFESPSATHWFGTDEF 81 Query: 83 GRDIFSRVLYGARISIWTGLIAVAISFLIGVPLGGVAAYYGGRTGTIIMRLMDVLLSFPS 142 GRDIFSR++YG+RIS+ G +AV+ S LIG LG +A YYGG +IMR MDVL S P Sbjct: 82 GRDIFSRIVYGSRISLQVGFVAVSFSILIGGFLGALAGYYGGWIDNVIMRFMDVLFSVPQ 141 Query: 143 LVLSMAIAASIGAGLTSAMIAVGIVGIPEFARLMFGQTVSLREKEYVEASRAIGVKNSVI 202 L+L++++AAS+G GL + MIAVGI +P++ARL+ +S+RE+E++EA+R++G K+ I Sbjct: 142 LLLAISVAASLGPGLFNLMIAVGISSVPQYARLVRASVLSIREQEFIEAARSVGAKDLKI 201 Query: 203 LYRHILPNALAPLMVQATLGMGFAILTASSLSFLGLGVKPPIAEWGAMISEGREYIISGQ 262 ++RHILPN +AP++VQ TLG+ FAILTA+ LSF+GLG++PPI EWGAM+S GREY I Sbjct: 202 IFRHILPNCMAPIIVQGTLGVAFAILTAAGLSFIGLGIQPPIPEWGAMLSGGREY-IRDH 260 Query: 263 WWLVTFPGLGIATSILGFNLLGDGFRDVLDPRLRS 297 ++ FPGL I +IL N LGDG RD LDP+L++ Sbjct: 261 AYMTMFPGLAIMITILALNFLGDGLRDALDPKLKN 295 >C0CUY5.1 C0CUY5_9CLOT Putative uncharacterized protein Length = 286 Score = 296 bits (757), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 141/277 (50%), Positives = 196/277 (70%), Gaps = 1/277 (0%) Query: 20 KPKTLIRLLLHNRLAAIGLVLIVIWTVTALIAPWIAPHDPYLTDMANKLQAPSGSHWFGT 79 +P L RL+ ++A +G ++I++W + L++ + P+ P +MA KL AP H GT Sbjct: 11 RPSFLQRLV-KQKMALVGGIVILLWLLVGLVSFFYTPYGPNEVNMAEKLMAPGAGHLMGT 69 Query: 80 DNFGRDIFSRVLYGARISIWTGLIAVAISFLIGVPLGGVAAYYGGRTGTIIMRLMDVLLS 139 DNFGRDI SR++ GARIS+ G +AV IS IG+PLG + YY G+ G +IMR+MD L + Sbjct: 70 DNFGRDILSRMMCGARISLLLGFVAVCISLCIGIPLGAFSGYYEGKAGNLIMRVMDSLQA 129 Query: 140 FPSLVLSMAIAASIGAGLTSAMIAVGIVGIPEFARLMFGQTVSLREKEYVEASRAIGVKN 199 FP LVL M+I+ ++G SAM+AVGI GIP FARLM+ QT+S+++ ++E AIG+ Sbjct: 130 FPMLVLVMSISVALGRNSFSAMLAVGIAGIPNFARLMYAQTLSVKQSAFIEGEHAIGLPR 189 Query: 200 SVILYRHILPNALAPLMVQATLGMGFAILTASSLSFLGLGVKPPIAEWGAMISEGREYII 259 IL RHILPN + P++V+ +L +G AILT SSLSFLG+GV+PP EWG MIS+ R YI+ Sbjct: 190 RDILVRHILPNCITPILVRLSLSLGSAILTVSSLSFLGIGVQPPTPEWGYMISDARGYIL 249 Query: 260 SGQWWLVTFPGLGIATSILGFNLLGDGFRDVLDPRLR 296 +G+WW++ FPGL IA+ +L FNL GDG RD LD R + Sbjct: 250 TGEWWMIFFPGLAIASLVLSFNLFGDGLRDALDYRTQ 286 >A4J7A9.1 A4J7A9_DESRM Binding-protein-dependent transport systems inner membrane component Length = 296 Score = 295 bits (754), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 138/269 (51%), Positives = 196/269 (72%), Gaps = 1/269 (0%) Query: 28 LLHNRLAAIGLVLIVIWTVTALIAPWIAPHDPYLTDMANKLQAPSGSHWFGTDNFGRDIF 87 L N+LA + L+ ++ T A+ AP++AP+DPYL++M L PS HW G D GRDI Sbjct: 28 LRKNKLAMVSLIFLLTLTFVAIFAPFVAPYDPYLSEMPKALHGPSAQHWLGNDELGRDIL 87 Query: 88 SRVLYGARISIWTGLIAVAISFLIGVPLGGVAAYYGGRTGTIIMRLMDVLLSFPSLVLSM 147 SR++YGA +S+ GLIAV I+ +G+ +G A YYGGR IIMR MD++L+FPS++L++ Sbjct: 88 SRIIYGAGVSLRVGLIAVCIALSVGMVVGSAAGYYGGRLDNIIMRFMDIMLAFPSILLAI 147 Query: 148 AIAASIGAGLTSAMIAVGIVGIPEFARLMFGQTVSLREKEYVEASRAIGVKNSVILYRHI 207 A+ A +G G+ +A+IA+GIV IPE+AR++ G +S++E EYV+A+RAIG + I+++HI Sbjct: 148 ALMAVLGRGVENAIIAIGIVSIPEYARIIRGSVLSVKENEYVQAARAIGNNDFQIIFKHI 207 Query: 208 LPNALAPLMVQATLGMGFAILTASSLSFLGLGVKPPIAEWGAMISEGREYIISGQWWLVT 267 +PN +AP++V+ATLG+ AIL S+L FLGLGV PP AEWG M+ GR Y+ + LV Sbjct: 208 MPNVMAPVIVRATLGISTAILETSALGFLGLGVAPPFAEWGTMLGSGRGYMYNAP-HLVF 266 Query: 268 FPGLGIATSILGFNLLGDGFRDVLDPRLR 296 FPG+ I +++ FNLLGDG RD LDPRLR Sbjct: 267 FPGIAITLTVMAFNLLGDGLRDALDPRLR 295 >C0Z967.1 C0Z967_BREBN ABC transporter permease protein Length = 299 Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 136/276 (49%), Positives = 199/276 (72%), Gaps = 1/276 (0%) Query: 22 KTLIRLLLHNRLAAIGLVLIVIWTVTALIAPWIAPHDPYLTDMANKLQAPSGSHWFGTDN 81 +T R L N+LA +G +++ + AL+AP+IAPHDPY D+ NKL+ PS HW GTD+ Sbjct: 25 RTFYRKLRKNKLAMVGGCIVIFYIAIALLAPFIAPHDPYEIDLVNKLKPPSSEHWMGTDD 84 Query: 82 FGRDIFSRVLYGARISIWTGLIAVAISFLIGVPLGGVAAYYGGRTGTIIMRLMDVLLSFP 141 GRD+ SR+LYG ++S+ G +AV I G+ LG ++ YYGG TII R++DVLL+FP Sbjct: 85 KGRDVLSRLLYGTQLSMSVGFVAVFIGAFFGIILGLLSGYYGGWVDTIISRIIDVLLAFP 144 Query: 142 SLVLSMAIAASIGAGLTSAMIAVGIVGIPEFARLMFGQTVSLREKEYVEASRAIGVKNSV 201 ++LS+AI +++G L + MIAVGI IP FAR++ G T+++++ EY++A R++G + Sbjct: 145 GILLSLAIVSALGPSLFNVMIAVGIFSIPVFARIVRGSTLTVKKLEYIDAIRSLGANDFT 204 Query: 202 ILYRHILPNALAPLMVQATLGMGFAILTASSLSFLGLGVKPPIAEWGAMISEGREYIISG 261 I++RHI PN L+P++VQAT+ + AIL+A+ LSFLGLG +PP+ EWGAM+S GR+++ + Sbjct: 205 IIFRHIFPNILSPIIVQATMRLATAILSAAGLSFLGLGAQPPLPEWGAMLSNGRDFLFTA 264 Query: 262 QWWLVTFPGLGIATSILGFNLLGDGFRDVLDPRLRS 297 L FPG IAT +LGFN+ GDG RD LDPR++ Sbjct: 265 P-HLAMFPGFAIATLVLGFNIFGDGLRDALDPRMKQ 299 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.142 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,698,535,145 Number of extensions: 72543396 Number of successful extensions: 360229 Number of sequences better than 1.0e-05: 6286 Number of HSP's gapped: 353572 Number of HSP's successfully gapped: 6343 Length of query: 299 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 164 Effective length of database: 1,788,859,178 Effective search space: 293372905192 Effective search space used: 293372905192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)