BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0037.p (325 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0CUY4.1 C0CUY4_9CLOT Putative uncharacterized protein 367 e-100 A6NZV2.1 A6NZV2_9BACE Putative uncharacterized protein 358 4e-97 Q3AD09.1 Q3AD09_CARHZ Oligopeptide/dipeptide ABC transporter, pe... 301 7e-80 Q313B1.1 Q313B1_DESDG Dipeptide ABC transporter, permease protein 300 1e-79 A4Z2P1.1 A4Z2P1_BRASO Putative dipeptide/oligopeptide/nickel ABC... 298 4e-79 >C0CUY4.1 C0CUY4_9CLOT Putative uncharacterized protein Length = 335 Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust. Identities = 167/325 (51%), Positives = 236/325 (72%) Query: 1 MIPALLGIIVITFILSRVLPGDPAIMLAGEQAPEETVNKIRQDMGLDKPLYIQFFSYFGQ 60 MIP++L +++ITF LSR++PGDPA M+AGEQAPEE V +IR++MGL+ P+ QF Y G Sbjct: 11 MIPSVLLVLLITFTLSRIVPGDPARMMAGEQAPEEAVERIREEMGLNDPIPKQFVDYVGD 70 Query: 61 LFQGNIGYAYHTGHSVASDLATRFPXXXXXXXXXXXXXXXXXXXXXXXXXTRKESVLDHI 120 + G++G A+HTG V D A RFP ++K+S DH+ Sbjct: 71 VLHGDLGTAWHTGKPVTYDFAMRFPASLELALCALLLAVLIGIPVGIYAASKKDSAADHV 130 Query: 121 SRVFSLIGACVPIFWLGLMFIYIFYSILGWAPAPMGRISGDLNPPSHITGLYVLDSILSG 180 SRV +L+G VP+FWLG M IY+ Y+ PAP+GRIS ++ PP+ ITGLY+LDS+L+G Sbjct: 131 SRVVTLLGTSVPVFWLGFMLIYLLYAKYDLIPAPIGRISDNIYPPTQITGLYLLDSLLTG 190 Query: 181 DMVALKSSIVHLVLPAICLSTGTMAIVARMTRSSMLEVVDQDFVRTARAKGLKESAVIYK 240 DM+A KS++ H++LPAICLS G++A+++RMTRS+M+EV++ D++RTAR+KG+KE V+ K Sbjct: 191 DMIAFKSALSHILLPAICLSFGSLAVISRMTRSNMIEVLNLDYIRTARSKGIKERQVVGK 250 Query: 241 HALVNALIPTLTVLGLQFGYLMGGAVITETIFSWPGIGGYVTDSILAADYAPIQAFTLVS 300 H L N L+P +TV+G Q G L+G AV+ ETIF+WPG+G Y+T SIL DYAP+QAFT+VS Sbjct: 251 HGLRNILVPVMTVIGAQLGGLIGNAVVVETIFNWPGVGSYITQSILQTDYAPVQAFTVVS 310 Query: 301 AILYCGINLAVDLIYGLIDPRIRYE 325 ++Y INL +D++Y ++DPRI Y Sbjct: 311 VLIYMVINLILDILYAVVDPRITYN 335 >A6NZV2.1 A6NZV2_9BACE Putative uncharacterized protein Length = 337 Score = 358 bits (919), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 172/324 (53%), Positives = 227/324 (70%) Query: 2 IPALLGIIVITFILSRVLPGDPAIMLAGEQAPEETVNKIRQDMGLDKPLYIQFFSYFGQL 61 IPA++ +++I F+L+RV+PGDPA GE A EE V ++R++ GL+ PL +QF Y + Sbjct: 14 IPAVVLVVIIIFLLTRVMPGDPARAYLGEMATEEQVEQLREEWGLNDPLPVQFVRYVSGI 73 Query: 62 FQGNIGYAYHTGHSVASDLATRFPXXXXXXXXXXXXXXXXXXXXXXXXXTRKESVLDHIS 121 G+ GY+ T +V +D R P T K S LDH + Sbjct: 74 LHGDFGYSNRTHDTVLNDFIKRIPASLELALWALAIAILIGVPLGIASATHKNSPLDHGA 133 Query: 122 RVFSLIGACVPIFWLGLMFIYIFYSILGWAPAPMGRISGDLNPPSHITGLYVLDSILSGD 181 R+FS++GA +P+FW GLM I IFY+ L W AP GRIS +NPP+ ITG+YVLDSIL+GD Sbjct: 134 RIFSMLGATMPVFWFGLMLILIFYATLHWTVAPTGRISMGINPPTTITGMYVLDSILTGD 193 Query: 182 MVALKSSIVHLVLPAICLSTGTMAIVARMTRSSMLEVVDQDFVRTARAKGLKESAVIYKH 241 MVALK S+ H++LPAI LS TMA++ARMTR+SMLEV+ QD++RTARAKG+KE VIY+H Sbjct: 194 MVALKDSLAHIILPAITLSMSTMAVMARMTRASMLEVLGQDYIRTARAKGMKERIVIYRH 253 Query: 242 ALVNALIPTLTVLGLQFGYLMGGAVITETIFSWPGIGGYVTDSILAADYAPIQAFTLVSA 301 AL NALIP LTVLG QFG ++G V+ ETIFSWPGIG YVTD+IL DY P+QAF L SA Sbjct: 254 ALRNALIPILTVLGGQFGMMLGYTVVVETIFSWPGIGFYVTDAILNVDYNPVQAFALFSA 313 Query: 302 ILYCGINLAVDLIYGLIDPRIRYE 325 +LY INL +D++Y ++D R++Y+ Sbjct: 314 LLYVVINLVLDILYTVVDRRVKYD 337 >Q3AD09.1 Q3AD09_CARHZ Oligopeptide/dipeptide ABC transporter, permease protein Length = 334 Score = 301 bits (770), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 145/325 (44%), Positives = 213/325 (65%), Gaps = 2/325 (0%) Query: 1 MIPALLGIIVITFILSRVLPGDPAIMLAGEQAPEETVNKIRQDMGLDKPLYIQFFSYFGQ 60 +IP L GI ++F+L +PGDP ++ GE A E ++R+ +GL+ PLY Q+ + Sbjct: 12 LIPVLFGITFLSFMLIHFIPGDPVTVILGEHASPERAAELREQLGLNDPLYKQYLKFLNN 71 Query: 61 LFQGNIGYAYHTGHSVASDLATRFPXXXXXXXXXXXXXXXXXXXXXXXXXTRKESVLDHI 120 L G++G + T V +LAT FP ++ S D++ Sbjct: 72 LLHGDLGRSIITHEKVLKELATFFPATVELTLAAMFIATIIGIAAGIVAAVKQYSWFDNL 131 Query: 121 SRVFSLIGACVPIFWLGLMFIYIFYSILGWAPAPMGRISGDLNPPSHITGLYVLDSILSG 180 S + +L G +PIFWLGLM IY+F +LGW P P R+S + + P+ +T LY++D++L+G Sbjct: 132 SMIGALTGVSMPIFWLGLMLIYLFAQVLGWLP-PSARLSIEYSVPT-VTNLYLIDTLLAG 189 Query: 181 DMVALKSSIVHLVLPAICLSTGTMAIVARMTRSSMLEVVDQDFVRTARAKGLKESAVIYK 240 + A K ++ HL+LPA+ L T M+I+ARMTRSSMLEV+ QD++RTARAKGL E+ VI K Sbjct: 190 NWAAFKDALAHLILPALALGTIPMSIIARMTRSSMLEVLRQDYIRTARAKGLGEATVILK 249 Query: 241 HALVNALIPTLTVLGLQFGYLMGGAVITETIFSWPGIGGYVTDSILAADYAPIQAFTLVS 300 HAL NA +P +TV+GLQFGYL+GGAV+TET+FSWPG+G Y+ +I+A D+ +Q + Sbjct: 250 HALKNAFLPVVTVIGLQFGYLLGGAVMTETVFSWPGVGRYIYQAIMARDFPVVQGSITII 309 Query: 301 AILYCGINLAVDLIYGLIDPRIRYE 325 A+++ INL VD++Y +IDPRIRY+ Sbjct: 310 ALIFVLINLIVDILYTVIDPRIRYQ 334 >Q313B1.1 Q313B1_DESDG Dipeptide ABC transporter, permease protein Length = 333 Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 151/325 (46%), Positives = 218/325 (67%), Gaps = 6/325 (1%) Query: 1 MIPALLGIIVITFILSRVLPGDPAIMLAGEQAPEETVNKIRQDMGLDKPLYIQFFSYFGQ 60 +IP +LGI V+ F + ++PGDPA M+ GE+A E+ + ++RQ +GLDKPLY+Q+ + + Sbjct: 12 VIPTVLGISVLVFFMIHLVPGDPAEMMLGERANEKALTELRQQLGLDKPLYVQYGLFMSR 71 Query: 61 LFQGNIGYAYHTGHSVASDLATRFPXXXXXXXXXXXXXXXXXXXXXXXXXTRKESVLDHI 120 L QG++G A T + +++AT FP TR+ S+ D+ Sbjct: 72 LAQGDLGRALRTNEKITTEIATHFPATLELALVAIVFAVTLGMLAGIVSATRQYSLFDYG 131 Query: 121 SRVFSLIGACVPIFWLGLMFIYIFYSILGWAPAPMGRISGD--LNPPSHITGLYVLDSIL 178 S V SLIG +PIFWLGL+ + IF LGW P GR+S D L P +T LY++DSI+ Sbjct: 132 SMVLSLIGVSMPIFWLGLVLMIIFSVNLGWLPLS-GRLSYDITLEP---VTNLYLIDSII 187 Query: 179 SGDMVALKSSIVHLVLPAICLSTGTMAIVARMTRSSMLEVVDQDFVRTARAKGLKESAVI 238 G+ A K ++ H+++PA LST MAI+ARMTRSSMLEV+ QD++RTA+AKGL AV Sbjct: 188 QGNWAAFKDALHHIIMPAFTLSTIPMAIIARMTRSSMLEVLRQDYIRTAKAKGLSPRAVH 247 Query: 239 YKHALVNALIPTLTVLGLQFGYLMGGAVITETIFSWPGIGGYVTDSILAADYAPIQAFTL 298 YKHAL NALIP +T++GLQF L+GGA++TETIF+WPGIG ++ +++ A D+ +Q T+ Sbjct: 248 YKHALRNALIPIVTIIGLQFSILLGGAILTETIFAWPGIGSWLLNAVYARDFNAVQGGTM 307 Query: 299 VSAILYCGINLAVDLIYGLIDPRIR 323 + A L+ IN+ VDL+Y +I+PRI+ Sbjct: 308 LIATLFVLINVLVDLLYAVINPRIK 332 >A4Z2P1.1 A4Z2P1_BRASO Putative dipeptide/oligopeptide/nickel ABC transporter, permease protein Length = 337 Score = 298 bits (764), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 136/324 (41%), Positives = 209/324 (64%) Query: 2 IPALLGIIVITFILSRVLPGDPAIMLAGEQAPEETVNKIRQDMGLDKPLYIQFFSYFGQL 61 IP+L+G++++TF+L+R LPGDPA AG A +E V +IR+ +G DKPL QFF Y L Sbjct: 13 IPSLIGVVIVTFLLTRALPGDPAAYFAGPAATKEAVEQIRKKLGFDKPLVEQFFRYTVDL 72 Query: 62 FQGNIGYAYHTGHSVASDLATRFPXXXXXXXXXXXXXXXXXXXXXXXXXTRKESVLDHIS 121 G++G + TG VA+++ R P TR S +DH Sbjct: 73 AHGDLGSSLTTGQPVATEIRNRLPASAELTLLGLLVSVAIALPLGVLAATRPGSWIDHTC 132 Query: 122 RVFSLIGACVPIFWLGLMFIYIFYSILGWAPAPMGRISGDLNPPSHITGLYVLDSILSGD 181 RV + G +P+F+ GL+ +Y+FY LGW+PAP+GR+ + P+ +TG Y++D++++GD Sbjct: 133 RVVTTAGVSLPVFFTGLVLVYVFYFRLGWSPAPLGRLDVFYSAPNSVTGFYLIDTLIAGD 192 Query: 182 MVALKSSIVHLVLPAICLSTGTMAIVARMTRSSMLEVVDQDFVRTARAKGLKESAVIYKH 241 A +S++ L+LPA L+ ++A VARMTR+SML V+ +FVRTARA GL S V + Sbjct: 193 GEAFRSALSQLILPAATLAIFSLAPVARMTRASMLSVLSSEFVRTARASGLSPSTVTVTY 252 Query: 242 ALVNALIPTLTVLGLQFGYLMGGAVITETIFSWPGIGGYVTDSILAADYAPIQAFTLVSA 301 A NA++P +T L + F +L+G V+ E +F+WPGIG Y ++++A+D+AP+Q F L A Sbjct: 253 AFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALIASDFAPVQGFVLTMA 312 Query: 302 ILYCGINLAVDLIYGLIDPRIRYE 325 ++Y +NL +D++YG+IDPR+R E Sbjct: 313 VMYVVLNLVIDILYGVIDPRVRLE 336 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.143 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,700,508,148 Number of extensions: 63889968 Number of successful extensions: 240821 Number of sequences better than 1.0e-05: 5910 Number of HSP's gapped: 231903 Number of HSP's successfully gapped: 6460 Length of query: 325 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 189 Effective length of database: 1,779,438,163 Effective search space: 336313812807 Effective search space used: 336313812807 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)