BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0030.p (218 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value O58781.1 O58781_PYRHO 228aa long hypothetical hydantoin racemase 174 6e-42 Q2RLZ6.1 Q2RLZ6_MOOTA Asp/Glu racemase 149 2e-34 C1UBS3.1 C1UBS3_9ACTN Hydantoin racemase 139 2e-31 C5ER27.1 C5ER27_9FIRM Putative uncharacterized protein 123 1e-26 Q5WKI6.1 Q5WKI6_BACSK Putative uncharacterized protein 113 1e-23 >O58781.1 O58781_PYRHO 228aa long hypothetical hydantoin racemase Length = 228 Score = 174 bits (440), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 93/198 (46%), Positives = 125/198 (63%), Gaps = 1/198 (0%) Query: 2 LGIIRVITLEEEAAVHLHGALIERRF-GLPVMSRCIQDQPLGVFDEETEAQSVPKIIALA 60 +G+IRVITLE++ ++LHG +IE F L V+SRCI+DQP G+++EETE ++ PKII LA Sbjct: 9 IGLIRVITLEDKEILNLHGRIIESAFPELKVVSRCIEDQPKGIYNEETEREAEPKIIRLA 68 Query: 61 RELERSGCTAIGISCXXXXXXXXXXXXVRVPVLGAGSCAAHVAMAYSARVGVLTILKEVP 120 +E ER G AI ISC + +PV+GAGS + +A+AY RVGVL + +E P Sbjct: 69 KEFEREGVDAIIISCAADPAVEKVRKLLSIPVIGAGSSVSALALAYGRRVGVLNLTEETP 128 Query: 121 PLIRSILREAYVGMDRPDGVRATLDLNTPXXXXXXXXXXXXXKERGAEAIVLACTGFATI 180 +IRSIL + D P GV TLDL T KE+G E I L CTG +TI Sbjct: 129 KVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTGMSTI 188 Query: 181 GLAAELEEKLGIRALDPI 198 G+A LEE++GI +DP+ Sbjct: 189 GIAPVLEEEVGIPVIDPV 206 >Q2RLZ6.1 Q2RLZ6_MOOTA Asp/Glu racemase Length = 211 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 85/198 (42%), Positives = 121/198 (61%) Query: 1 MLGIIRVITLEEEAAVHLHGALIERRFGLPVMSRCIQDQPLGVFDEETEAQSVPKIIALA 60 ML +IRV+T ++E ++ HG LI R+G+P S CI DQP G++D+ETE +VPKI+ LA Sbjct: 1 MLAVIRVLTTDDEDLLNAHGRLISERYGIPTRSYCIPDQPRGIYDDETERVAVPKIVQLA 60 Query: 61 RELERSGCTAIGISCXXXXXXXXXXXXVRVPVLGAGSCAAHVAMAYSARVGVLTILKEVP 120 R +E G AI ISC +VPV+GAGS AA VA+A R+GVL +++ P Sbjct: 61 RRVEEEGAGAIFISCAADPALAEVRATCKVPVIGAGSAAAAVALAAGERIGVLNLMESTP 120 Query: 121 PLIRSILREAYVGMDRPDGVRATLDLNTPXXXXXXXXXXXXXKERGAEAIVLACTGFATI 180 + ++L V RP+GV T DL TP E+GA+ IV ACTG++TI Sbjct: 121 AAVAAVLGRRMVAQARPEGVTNTRDLMTPEGKKQALKAAGLLVEKGADVIVFACTGYSTI 180 Query: 181 GLAAELEEKLGIRALDPI 198 GLA ++++ LG+R +D + Sbjct: 181 GLAGDIKKHLGVRVIDAV 198 >C1UBS3.1 C1UBS3_9ACTN Hydantoin racemase Length = 222 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/198 (44%), Positives = 108/198 (54%), Gaps = 2/198 (1%) Query: 2 LGIIRVITLEEEAAVHLHGALIERRF-GLPVMSRCIQDQPLGVFDEETEAQSVPKIIALA 60 +G+IRVIT ++E A HG LIER F + V+SRCI DQP GV D T+ + PK+IALA Sbjct: 14 VGVIRVITQDQEQA-DAHGLLIERAFPQVRVVSRCIPDQPEGVHDAATKRTAEPKVIALA 72 Query: 61 RELERSGCTAIGISCXXXXXXXXXXXXVRVPVLGAGSCAAHVAMAYSARVGVLTILKEVP 120 +L I +SC V VPV+GAG A A + VGV+ I + P Sbjct: 73 CQLVEQDADGIIVSCADDPGVAEARAIVGVPVVGAGESMATAAALHEGPVGVIGITPDAP 132 Query: 121 PLIRSILREAYVGMDRPDGVRATLDLNTPXXXXXXXXXXXXXKERGAEAIVLACTGFATI 180 P IL E + PDGVR T DLNTP +E GA I LACTGF+TI Sbjct: 133 PAFPRILGERLLANLVPDGVRDTRDLNTPAGQHAAITTARRLREEGAAVIALACTGFSTI 192 Query: 181 GLAAELEEKLGIRALDPI 198 GLA +LE GI LDP+ Sbjct: 193 GLAPQLERAAGIPVLDPV 210 >C5ER27.1 C5ER27_9FIRM Putative uncharacterized protein Length = 223 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/199 (36%), Positives = 108/199 (54%), Gaps = 4/199 (2%) Query: 2 LGIIRVITLEEEAAVHLHGALIERRF-GLPVMSRCIQDQPLGVFDEETEAQSVPKIIALA 60 +G+IRV+T E++ V +HG +IE+ + G+ +S+CI DQP G+ E E +VPKI+ A Sbjct: 13 VGVIRVLTSEDQEFVDMHGNIIEQHYPGIKCISKCIPDQPEGIHSHELERIAVPKIVETA 72 Query: 61 RELERSGCTAIGISCXXXXXXXXXXXXVR-VPVLGAGSCAAHVAMAYSARVGVLTILKEV 119 R E I +SC + + V G G +AM Y ++ VL I+ Sbjct: 73 RSFE--DVDMIIVSCADDPGVEEIRRALPGMKVTGGGETTVSLAMRYGQKIAVLGIVDYA 130 Query: 120 PPLIRSILREAYVGMDRPDGVRATLDLNTPXXXXXXXXXXXXXKERGAEAIVLACTGFAT 179 P ++ E V + +P+GV +TLDL TP KE+GAE I L CTG T Sbjct: 131 PKAYLRMIPEKIVALGKPEGVDSTLDLMTPEGRESCLKTARELKEKGAEVIALGCTGLTT 190 Query: 180 IGLAAELEEKLGIRALDPI 198 IG+A E+E+++GI +DP+ Sbjct: 191 IGIAREIEDEVGIPVIDPV 209 >Q5WKI6.1 Q5WKI6_BACSK Putative uncharacterized protein Length = 217 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 71/197 (36%), Positives = 107/197 (54%), Gaps = 1/197 (0%) Query: 1 MLGIIRVITLEEEAAVHLHGALIERRFGLPVMSRCIQDQPLGVFDEETEAQSVPKIIALA 60 MLGI+RV T E+E + H L+ +R G+ S CI DQP G++++E++A ++PKI AL Sbjct: 5 MLGIVRVWTTEDEQLLQEHSVLMRQRMGIHSKSDCIPDQPYGIYNQESKAAALPKITALV 64 Query: 61 REL-ERSGCTAIGISCXXXXXXXXXXXXVRVPVLGAGSCAAHVAMAYSARVGVLTILKEV 119 +E+ + AI ISC V +PV+GAG AH A S ++GVL + ++ Sbjct: 65 KEMAADADIDAISISCAADPALDLSRAAVSIPVIGAGEAGAHAACMISDKIGVLGLTNKI 124 Query: 120 PPLIRSILREAYVGMDRPDGVRATLDLNTPXXXXXXXXXXXXXKERGAEAIVLACTGFAT 179 P I ++L E VG P+GV T DL +GA AI+ ACTG++T Sbjct: 125 PEAIETVLGERLVGHLVPEGVTNTTDLVKKETPAAAVSAARQLINQGATAILFACTGYST 184 Query: 180 IGLAAELEEKLGIRALD 196 I L + ++L + +D Sbjct: 185 IHLKETIIKELAVPVID 201 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.139 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 974,727,604 Number of extensions: 32734562 Number of successful extensions: 67592 Number of sequences better than 1.0e-05: 9 Number of HSP's gapped: 67609 Number of HSP's successfully gapped: 9 Length of query: 218 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 88 Effective length of database: 1,835,964,253 Effective search space: 161564854264 Effective search space used: 161564854264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)