BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0028.p (244 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A8GAI9.1 A8GAI9_SERP5 AroM family protein 182 3e-44 C4UJY2.1 C4UJY2_YERRU Protein of aro operon, regulated by aroR 155 4e-36 Q2RLZ2.1 Q2RLZ2_MOOTA AroM 150 1e-34 C4CHG4.1 C4CHG4_9CHLR AroM protein 148 3e-34 B2VIS4.1 B2VIS4_ERWT9 Protein of aro operon, regulated by aroR 145 2e-33 >A8GAI9.1 A8GAI9_SERP5 AroM family protein Length = 225 Score = 182 bits (461), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 97/218 (44%), Positives = 138/218 (63%), Gaps = 3/218 (1%) Query: 29 ITIGQAPRTDVAPILEKYLEGRAELVQSGVLDGFTPAQVREYYTPGEGEYVLTSRMRDGS 88 +TIGQAPR D+ P+L YL ++ G+LDG +Q+ E YTP GE VL SR+ DG+ Sbjct: 8 LTIGQAPRNDIMPLLSAYLPAE-QVRHVGLLDGLKASQIDERYTPQAGEKVLVSRLLDGT 66 Query: 89 AAVVSRERIKSVLQGKIDAMEASGIKTILLLCTGEFPGLRTVRAHLIEPDRIIPPVVQAL 148 ++ R++ LQ KI+A+EA G + ILLLCTGEF L +A L+EPDRIIPP++ A+ Sbjct: 67 QVRLAASRVELGLQQKINALEAEGCEVILLLCTGEFGQLHAQQALLLEPDRIIPPLISAI 126 Query: 149 TGKRRLGLIGPLPEQEQNLNEKFAASGSALPFAAVSPYTGSEADFRAAAEKLKDR-ADVI 207 + R+G++ P+ EQ K+ + FA SPY +A AA +L+ + A V+ Sbjct: 127 VSQHRVGIVVPVAEQISQQASKWQLLATPPCFAVASPYLADDAVLELAASELQRQGAQVV 186 Query: 208 VLDCMGYLEQHRQW-AASAGVPVVLSNALMGKLIAEMV 244 VLDC+GY QHR + A +PV+LSNAL+ KL AE++ Sbjct: 187 VLDCIGYHRQHRDFLQARLEIPVLLSNALVAKLAAELI 224 >C4UJY2.1 C4UJY2_YERRU Protein of aro operon, regulated by aroR Length = 218 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 83/218 (38%), Positives = 130/218 (59%), Gaps = 3/218 (1%) Query: 29 ITIGQAPRTDVAPILEKYLEGRAELVQSGVLDGFTPAQVREYYTPGEGEYVLTSRMRDGS 88 +TIGQAPR D+ P++ +YL ++ G+LDG QV E Y + + VL SR+ DG+ Sbjct: 1 MTIGQAPRHDIMPLISRYLP-LDKVSHVGLLDGLNALQVTEQYGATDTDSVLASRLADGT 59 Query: 89 AAVVSRERIKSVLQGKIDAMEASGIKTILLLCTGEFPGLRTVRAHLIEPDRIIPPVVQAL 148 ++ +++ LQ KI+ +EA + ILLLCTG F L+T +A L+ PDRIIPP++ A+ Sbjct: 60 PVFLAVSKVEWGLQHKIEQLEAKDYRYILLLCTGIFHHLQTQKALLLTPDRIIPPLIAAM 119 Query: 149 TGKRRLGLIGPLPEQEQNLNEKFAASGSALPFAAVSPYTGSEADFRAAAEKLKDR-ADVI 207 G RR+G++ P+ Q Q+ K+ + V+PY + A L+ + +++ Sbjct: 120 AGDRRVGIVLPVSTQRQHQVTKWTMLANPPCIVIVNPYQENVQSLGVVASTLQKQGVEIV 179 Query: 208 VLDCMGYLEQHRQWAASAGV-PVVLSNALMGKLIAEMV 244 VLDC+GY QHR + + PV+LSN L+ KL AE++ Sbjct: 180 VLDCIGYRYQHRDFLQEKLIKPVLLSNVLIAKLAAELI 217 >Q2RLZ2.1 Q2RLZ2_MOOTA AroM Length = 223 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 136/222 (61%), Gaps = 3/222 (1%) Query: 24 KQIGLITIGQAPRTDVAPILEKYLEGRAELVQSGVLDGFTPAQVREYYTPGEGEYVLTSR 83 +++G ITIGQ+PR DV P +++ L E++++G LDG T ++ PG G+YVL +R Sbjct: 3 RKVGAITIGQSPRVDVVPEIKEILGDSIEVLEAGALDGLTREEI-AALAPGPGDYVLVTR 61 Query: 84 MRDGSAAVVSRERIKSVLQGKIDAMEASGIKTILLLCTGEFPGLRTVRAHLIEPDRIIPP 143 +RDGS+ ++ E+I ++Q +ID + A+G + +LLLCTGEFP + R +++P I+ Sbjct: 62 LRDGSSVRIAEEKILPLMQARIDGVVAAGAEAVLLLCTGEFPPF-SCRRLILKPQLILHH 120 Query: 144 VVQALTGKRRLGLIGPLPEQEQNLNEKFAASGSALPFAAVSPYTGSEADFRAAAEKLKDR 203 A+ RRLG+I P Q + +++A GS L A SPY +A + AAA + Sbjct: 121 FTAAVATGRRLGVIVPDAGQVEETRKRWAGVGSDLAVEAASPYGPVDAIWEAAARLQAWQ 180 Query: 204 ADVIVLDCMGY-LEQHRQWAASAGVPVVLSNALMGKLIAEMV 244 A++IVLDC+G+ + R+ G+PV+L A+ + + E+V Sbjct: 181 AELIVLDCIGFNMSMKREINRRTGIPVILPRAVAARTLIELV 222 >C4CHG4.1 C4CHG4_9CHLR AroM protein Length = 221 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 91/224 (40%), Positives = 135/224 (60%), Gaps = 7/224 (3%) Query: 23 LKQIGLITIGQAPRTDVAPILEKYLEGRAELVQ-SGVLDGFTPAQVREYYTPGEGEYVLT 81 + IGL+TIGQAPR D+ + + G Q +G LDG P + P +GE L Sbjct: 1 MATIGLVTIGQAPREDIEATM--FPGGPPVPCQHAGALDGLDPNAI-AALAPRDGEIPLV 57 Query: 82 SRMRDGSAAVVSRERIKSVLQGKIDAMEASGIKTILLLCTGEFPGLRTVRAHLIEPDRII 141 +R+RDG VV++E + +L G + + A G + +++LCTGEFPGL T L+ PDR++ Sbjct: 58 TRLRDGQEVVVAKESVLPLLAGAVKRVVADGARVVVVLCTGEFPGL-TAPVPLVFPDRVL 116 Query: 142 PPVVQALTGKRRLGLIGPLPEQEQNLNEKFAASGSALPFAAVSPYTGSEADFRAAAEKLK 201 V AL LG++ P P Q + K+AA G +L AA SPYTG+ A+ AE+L+ Sbjct: 117 RGTVDALLPDGILGVLMPHPGQGPLMERKWAAPGRSLRCAAASPYTGA-AELGVRAEELR 175 Query: 202 DR-ADVIVLDCMGYLEQHRQWAASAGVPVVLSNALMGKLIAEMV 244 A +IV+DCMGY + +Q A+AGVP +L+N L+G+++ E+V Sbjct: 176 SAGAQLIVMDCMGYTAEMKQAVATAGVPTILANRLVGRVVEEIV 219 >B2VIS4.1 B2VIS4_ERWT9 Protein of aro operon, regulated by aroR Length = 228 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/218 (37%), Positives = 133/218 (61%), Gaps = 3/218 (1%) Query: 29 ITIGQAPRTDVAPILEKYLEGRAELVQSGVLDGFTPAQVREYYTPGEGEYVLTSRMRDGS 88 +TIGQ+PR D+ P+L YL A++ +G+LDG + Q+ + + +G+ L SR+ DGS Sbjct: 8 LTIGQSPRIDILPMLLTYLP-EAQIAHAGLLDGLSRQQIEQEFGKQDGDRTLVSRLNDGS 66 Query: 89 AAVVSRERIKSVLQGKIDAMEASGIKTILLLCTGEFPGLRTVRAHLIEPDRIIPPVVQAL 148 +++ +++ LQ I +E G +TILLLCTG F L T RA L++PDRI+PP++ + Sbjct: 67 QVLLASHKVERGLQKCILQLEEQGFETILLLCTGVFDRLHTNRAMLLKPDRIVPPLIATI 126 Query: 149 TGKRRLGLIGPLPEQEQNLNEKFAASGSALPFAAVSPYTGSEADFRAAAEKLKDR-ADVI 207 G ++G++ P+ EQ K+ +A SPY + AA L+++ A+V+ Sbjct: 127 VGDLQVGVVVPVVEQTAEQASKWKVLSHPPCYAVASPYQAGDGSLLDAALSLQEQGAEVV 186 Query: 208 VLDCMGYLEQHR-QWAASAGVPVVLSNALMGKLIAEMV 244 VLDC+GY ++HR + G+PV+L N L+ KL AE++ Sbjct: 187 VLDCIGYQQRHRDRLQKILGIPVLLPNTLVVKLAAEVL 224 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,419,986,124 Number of extensions: 58551509 Number of successful extensions: 155964 Number of sequences better than 1.0e-05: 110 Number of HSP's gapped: 155643 Number of HSP's successfully gapped: 110 Length of query: 244 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 112 Effective length of database: 1,817,122,223 Effective search space: 203517688976 Effective search space used: 203517688976 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)