BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0026.p (385 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K374.1 B3K374_9BACI Beta-lactamase 398 e-109 C3AW71.1 C3AW71_BACMY Putative uncharacterized protein 390 e-106 C3BD27.1 C3BD27_BACMY Putative uncharacterized protein 387 e-105 C2W9P3.1 C2W9P3_BACCE Putative uncharacterized protein 384 e-105 C3BBU0.1 C3BBU0_BACMY Putative uncharacterized protein 384 e-105 >B3K374.1 B3K374_9BACI Beta-lactamase Length = 337 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 190/328 (57%), Positives = 236/328 (71%), Gaps = 3/328 (0%) Query: 54 AEATGFSGTILVKSGTHAAV-SGAYGYASKADTRPNRPDTRYGHASGSKLFTAIAVCQLM 112 A + FSGT+L+ + + A+GY+++AD PN+ DTR+G ASG KLFT IAVCQL+ Sbjct: 9 AANSHFSGTVLLTDQNRNIIWNAAFGYSNRADRIPNQGDTRFGIASGCKLFTGIAVCQLI 68 Query: 113 EQGKLALDSKIMDILEQAEFPRFSSDITVHHLLTHSSGIPDYFDEETMDDFASLWTTRPM 172 EQGKL+LDSK+ + L+ P S +ITV HLL+H+SGIPDYFDEE MDDF LW PM Sbjct: 69 EQGKLSLDSKLSECLD-IRLPHVSPEITVFHLLSHTSGIPDYFDEEVMDDFEDLWKAVPM 127 Query: 173 YQLRELKDFLPMFQELPMKFTPGTRFHYNNAGYILLGLLVEKLGGMAFTDYVEQFIFKAS 232 Y LR +DFLP+FQ PMKF PG RFHYNNAG++LLGL+VE+ G++F DYV+QF+F+ Sbjct: 128 YTLRSGRDFLPLFQNEPMKFQPGERFHYNNAGFVLLGLIVEQHAGLSFRDYVQQFVFEPC 187 Query: 233 GMADSGYFSLDALPTNTAHGYIENEDGTWTTNIYSIPVKGGADGGAFVTAPDMLLLWEGL 292 GM DSGYF LD LP NTA+GYI+ EDGTW TN Y+IP++G ADGGA+VTAPDM LW GL Sbjct: 188 GMNDSGYFPLDRLPANTAYGYIDEEDGTWRTNQYAIPIQGYADGGAYVTAPDMAKLWRGL 247 Query: 293 LQHKXXXXXXXXXXXXXHIHDDKEEY-YGYGVWITKRGGGIYKYHVMGYDPGVSFHSAYY 351 L + H HD + + YG GVWIT++ G +YKYHVMGYDPGV+F SAYY Sbjct: 248 LSNTLLSASMTEQLLAAHSHDPESDLKYGLGVWITEKNGNVYKYHVMGYDPGVNFRSAYY 307 Query: 352 PASGVTTAVLCNHSRGAYRMMRAIEECL 379 P +G T V N S GA+ MM+ IEE L Sbjct: 308 PDTGHTLVVASNASDGAFEMMQTIEEAL 335 >C3AW71.1 C3AW71_BACMY Putative uncharacterized protein Length = 346 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 180/340 (52%), Positives = 235/340 (69%), Gaps = 7/340 (2%) Query: 40 NMTQEQLHTIIQTEAEATGFSGTILVKSGTHAAVSGAYGYASKADTRPNRPDTRYGHASG 99 N+T+ +H II + FSG I +K A+GYA++AD + N TR+G ASG Sbjct: 12 NLTK-AIHNIIDEQ-----FSGAIYIKDNNEVLFESAFGYANRADKKLNTVHTRFGIASG 65 Query: 100 SKLFTAIAVCQLMEQGKLALDSKIMDILEQAEFPRFSSDITVHHLLTHSSGIPDYFDEET 159 KLFTA+A+CQL+E+G L+ +++ D L +FP F+ DIT+HHLLTH+SGIPDYFDE+ Sbjct: 66 CKLFTAVAICQLVEKGLLSFGTRLEDCL-NIKFPHFNKDITIHHLLTHTSGIPDYFDEQV 124 Query: 160 MDDFASLWTTRPMYQLRELKDFLPMFQELPMKFTPGTRFHYNNAGYILLGLLVEKLGGMA 219 MD+F LW PMY L ++KDFLP+FQ+ M F PG +FHYNNAG+I+LGL+VE+ ++ Sbjct: 125 MDNFEDLWKQTPMYLLNDVKDFLPLFQKENMMFQPGDKFHYNNAGFIVLGLIVEQQSELS 184 Query: 220 FTDYVEQFIFKASGMADSGYFSLDALPTNTAHGYIENEDGTWTTNIYSIPVKGGADGGAF 279 FT+Y+E +F+ GM+DSGYF LD LP NTA+GYI+N+DGTW TNIYSIP+KGGADGGAF Sbjct: 185 FTNYIESNLFQRCGMSDSGYFPLDQLPKNTAYGYIDNKDGTWRTNIYSIPIKGGADGGAF 244 Query: 280 VTAPDMLLLWEGLLQHKXXXXXXXXXXXXXHIHDDKEEYYGYGVWITKRGGGIYKYHVMG 339 +T DM+ WE L H+ IH YGYG+WITK I KYHVMG Sbjct: 245 ITPSDMIKFWEALFNHQLLSKECTEILLNSQIHVKDGVDYGYGLWITKNEESIIKYHVMG 304 Query: 340 YDPGVSFHSAYYPASGVTTAVLCNHSRGAYRMMRAIEECL 379 YDPGVSFHSA+YP SG+ +L N S G++ +M+ IEE Sbjct: 305 YDPGVSFHSAFYPKSGIKIVLLSNKSSGSFEVMKGIEEIF 344 >C3BD27.1 C3BD27_BACMY Putative uncharacterized protein Length = 346 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 179/340 (52%), Positives = 234/340 (68%), Gaps = 7/340 (2%) Query: 40 NMTQEQLHTIIQTEAEATGFSGTILVKSGTHAAVSGAYGYASKADTRPNRPDTRYGHASG 99 N+T+ +H II + FSG I +K A+GYA++AD + N TR+G ASG Sbjct: 12 NLTK-AIHNIIDEQ-----FSGAIYIKDNNEVLFESAFGYANRADKKLNTVHTRFGIASG 65 Query: 100 SKLFTAIAVCQLMEQGKLALDSKIMDILEQAEFPRFSSDITVHHLLTHSSGIPDYFDEET 159 KLFTA+A+CQL+E+G L+ +++ D L +F F+ DIT+HHLLTH+SGIPDYFDE+ Sbjct: 66 CKLFTAVAICQLVEKGLLSFGTRLEDCL-NIKFSHFNKDITIHHLLTHTSGIPDYFDEQV 124 Query: 160 MDDFASLWTTRPMYQLRELKDFLPMFQELPMKFTPGTRFHYNNAGYILLGLLVEKLGGMA 219 MD+F LW PMY L ++KDFLP+FQ+ M F PG +FHYNNAG+I+LGL+VE+ ++ Sbjct: 125 MDNFEDLWKQTPMYLLNDVKDFLPLFQKENMMFQPGDKFHYNNAGFIVLGLIVEQQSELS 184 Query: 220 FTDYVEQFIFKASGMADSGYFSLDALPTNTAHGYIENEDGTWTTNIYSIPVKGGADGGAF 279 FT+Y+E +F+ GM+DSGYF LD LP NTA+GYI+N+DGTW TNIYSIP+KGGADGGAF Sbjct: 185 FTNYIESNLFQRCGMSDSGYFPLDQLPKNTAYGYIDNKDGTWRTNIYSIPIKGGADGGAF 244 Query: 280 VTAPDMLLLWEGLLQHKXXXXXXXXXXXXXHIHDDKEEYYGYGVWITKRGGGIYKYHVMG 339 +T DM+ WE L H+ IH YGYG+WITK I KYHVMG Sbjct: 245 ITPSDMIKFWEALFNHQLLSKECTEILLNSQIHVKDGVDYGYGLWITKNEESIIKYHVMG 304 Query: 340 YDPGVSFHSAYYPASGVTTAVLCNHSRGAYRMMRAIEECL 379 YDPGVSFHSA+YP SG+ +L N S G++ +M+ IEE Sbjct: 305 YDPGVSFHSAFYPKSGIKIVLLSNKSSGSFEVMKGIEEIF 344 >C2W9P3.1 C2W9P3_BACCE Putative uncharacterized protein Length = 341 Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust. Identities = 179/334 (53%), Positives = 230/334 (68%), Gaps = 6/334 (1%) Query: 46 LHTIIQTEAEATGFSGTILVKSGTHAAVSGAYGYASKADTRPNRPDTRYGHASGSKLFTA 105 +H II + FSG I +K A+GYA++AD + N TR+G ASG KLFTA Sbjct: 12 IHNIIDEQ-----FSGAISIKDNHGVLFESAFGYANRADQKLNTVHTRFGIASGCKLFTA 66 Query: 106 IAVCQLMEQGKLALDSKIMDILEQAEFPRFSSDITVHHLLTHSSGIPDYFDEETMDDFAS 165 +A+CQL+E+G L+ ++++ D L +FP F+ +IT+HHLLTHSSGIPDYF+E+ M++F Sbjct: 67 VAICQLVEKGFLSFETRLEDCL-NIQFPHFNKEITIHHLLTHSSGIPDYFNEQVMENFED 125 Query: 166 LWTTRPMYQLRELKDFLPMFQELPMKFTPGTRFHYNNAGYILLGLLVEKLGGMAFTDYVE 225 LW PMY L + KDFLP+FQ M F PG +FHYNNAG+I+LGL+VE+ G++FTDY+E Sbjct: 126 LWKQTPMYLLNDAKDFLPLFQNGEMMFQPGEKFHYNNAGFIVLGLIVEQQSGLSFTDYIE 185 Query: 226 QFIFKASGMADSGYFSLDALPTNTAHGYIENEDGTWTTNIYSIPVKGGADGGAFVTAPDM 285 +F+ GM DSGYF LD LP NTA+GYI+N+DGTW TN YSIP+KGGADGGAF+T DM Sbjct: 186 ANLFQRCGMNDSGYFPLDRLPKNTAYGYIDNKDGTWRTNTYSIPIKGGADGGAFITPSDM 245 Query: 286 LLLWEGLLQHKXXXXXXXXXXXXXHIHDDKEEYYGYGVWITKRGGGIYKYHVMGYDPGVS 345 + WE L H+ IH YGYG+WITK I KYHVMGYDPGVS Sbjct: 246 IKFWEALFHHQLLSKECTETLLHSQIHVKDGVDYGYGLWITKSEESIMKYHVMGYDPGVS 305 Query: 346 FHSAYYPASGVTTAVLCNHSRGAYRMMRAIEECL 379 FHSA+YP SG+ A+L N S GA+ +M+ IEE Sbjct: 306 FHSAFYPKSGIMAAILSNKSSGAFEVMKGIEEIF 339 >C3BBU0.1 C3BBU0_BACMY Putative uncharacterized protein Length = 341 Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust. Identities = 180/340 (52%), Positives = 233/340 (68%), Gaps = 7/340 (2%) Query: 40 NMTQEQLHTIIQTEAEATGFSGTILVKSGTHAAVSGAYGYASKADTRPNRPDTRYGHASG 99 N+T+ +H II + FSG I +K A+GYA++AD + N TR+G ASG Sbjct: 7 NLTK-AIHNIIDEQ-----FSGAIYIKDNNKVLFESAFGYANRADKKLNTVHTRFGIASG 60 Query: 100 SKLFTAIAVCQLMEQGKLALDSKIMDILEQAEFPRFSSDITVHHLLTHSSGIPDYFDEET 159 KLFTA+A+CQL+E+G L+ ++++ + L +FP F+ +T+HHLLTHSSGIPDYFDE+ Sbjct: 61 CKLFTAVAICQLVEKGLLSFETRLENCL-NIKFPHFNKGVTIHHLLTHSSGIPDYFDEQV 119 Query: 160 MDDFASLWTTRPMYQLRELKDFLPMFQELPMKFTPGTRFHYNNAGYILLGLLVEKLGGMA 219 MDDF LW PMY L + KDFLP+FQ M F PG +FHYNNAG+I+LGL+VE+ G++ Sbjct: 120 MDDFEDLWKQIPMYLLNDAKDFLPLFQNGEMMFQPGEKFHYNNAGFIVLGLIVEQQSGLS 179 Query: 220 FTDYVEQFIFKASGMADSGYFSLDALPTNTAHGYIENEDGTWTTNIYSIPVKGGADGGAF 279 FTDY+E +F+ GM DSGYF LD LP +TA+GYI+N+D TW TN YSIP+KGGADGGAF Sbjct: 180 FTDYIEANLFQRCGMNDSGYFPLDRLPKSTAYGYIDNKDETWRTNTYSIPIKGGADGGAF 239 Query: 280 VTAPDMLLLWEGLLQHKXXXXXXXXXXXXXHIHDDKEEYYGYGVWITKRGGGIYKYHVMG 339 +T DM+ WE LL H+ IH YGYG+WITKR I KYHVMG Sbjct: 240 ITPSDMIKFWEALLNHQLLSKEYTEILLNSQIHVKDGVDYGYGLWITKREKSIIKYHVMG 299 Query: 340 YDPGVSFHSAYYPASGVTTAVLCNHSRGAYRMMRAIEECL 379 YDPGVSFHSA+YP SG+ A+ N S G++ +M+ IEE Sbjct: 300 YDPGVSFHSAFYPKSGIKIAIPSNKSSGSFEVMKGIEEIF 339 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.135 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,401,082,911 Number of extensions: 103551921 Number of successful extensions: 216558 Number of sequences better than 1.0e-05: 2333 Number of HSP's gapped: 214744 Number of HSP's successfully gapped: 2341 Length of query: 385 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 248 Effective length of database: 1,770,017,148 Effective search space: 438964252704 Effective search space used: 438964252704 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)