BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0025.p (138 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KET9.1 B3KET9_9BACI DinB family protein 186 4e-46 B1DG45.1 B1DG45_9BACL DinB family protein 165 1e-39 C2XV74.1 C2XV74_BACCE DinB 161 2e-38 C3BME2.1 C3BME2_9BACI DinB 160 4e-38 B3ZYD9.1 B3ZYD9_BACCE YizA 159 9e-38 >B3KET9.1 B3KET9_9BACI DinB family protein Length = 161 Score = 186 bits (473), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 90/138 (65%), Positives = 108/138 (78%), Gaps = 2/138 (1%) Query: 1 VDETELIKRRTGGPGSIYYTLFHIVECEYSWISA-LQGKPMPEEPPFEDYIGVQKIRDYS 59 V E EL+K+RTGG GSI +TL+HIV EY+W+ LQGK + + P FED V+ +RDYS Sbjct: 22 VSEEELLKQRTGGIGSILFTLYHIVTVEYAWLCGDLQGKEL-DIPSFEDCASVKGLRDYS 80 Query: 60 ARCHAEIAPFIYSWDSSMETRILSDQNAAGEWESFKYGEIMRHVLAHEIHHFGQLSIWSR 119 AR HAEIAPF+Y W+ S+E RI+ D N GE E F +GE+MRHV+AHEIHH GQLSIWSR Sbjct: 81 ARAHAEIAPFVYDWNDSLEDRIMVDTNQDGEHERFTFGEVMRHVIAHEIHHIGQLSIWSR 140 Query: 120 ELGKQPVTANLIRRGLFD 137 E+GKQPVTANLI RGLFD Sbjct: 141 EIGKQPVTANLIHRGLFD 158 >B1DG45.1 B1DG45_9BACL DinB family protein Length = 157 Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 80/136 (58%), Positives = 99/136 (72%), Gaps = 1/136 (0%) Query: 1 VDETELIKRRTGGPGSIYYTLFHIVECEYSWISALQGKPMPEEPPFEDYIGVQKIRDYSA 60 V + EL+K+RTGG G I +TLFH+ + EYSW+ ALQGKP EP F+ Y ++++ + S Sbjct: 22 VSQEELLKKRTGGIGGILHTLFHVADVEYSWLRALQGKPDFTEP-FQSYASLEQVMELSD 80 Query: 61 RCHAEIAPFIYSWDSSMETRILSDQNAAGEWESFKYGEIMRHVLAHEIHHFGQLSIWSRE 120 R H E+ F+ +W ME + LSD GE +FKYGEIMRHVLAHEIHH GQLS+WSRE Sbjct: 81 RFHEEVRSFVTAWTDDMEMKGLSDVYPNGEPINFKYGEIMRHVLAHEIHHMGQLSVWSRE 140 Query: 121 LGKQPVTANLIRRGLF 136 LGK PVTAN IRRGLF Sbjct: 141 LGKAPVTANFIRRGLF 156 >C2XV74.1 C2XV74_BACCE DinB Length = 176 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 77/146 (52%), Positives = 105/146 (71%), Gaps = 12/146 (8%) Query: 5 ELIKRRTGGPGSIYYTLFHIVECEYSWISALQGKPMPEEPPFEDYIGVQKIRDYSARCHA 64 EL+K+R GG GSI +TLFHIV+ EY WI L+G+P+PEEP FEDY +QK+++ SA+ H Sbjct: 31 ELVKKRVGGFGSILHTLFHIVDVEYMWILGLRGEPVPEEPLFEDYASLQKVKNLSAQYHE 90 Query: 65 EIAPFIYSWDSSMETRILSDQNAAGEWESFK------------YGEIMRHVLAHEIHHFG 112 ++ PF+ SW + M++R LS+ + E S + +GEI+RHV+ HEIHH G Sbjct: 91 KVKPFVTSWTNEMDSRKLSETDFNEETISSRDAPIRRRVIECTHGEIIRHVIVHEIHHIG 150 Query: 113 QLSIWSRELGKQPVTANLIRRGLFDN 138 QLSIW+RE+GK+PV+ANL RGLFDN Sbjct: 151 QLSIWAREIGKEPVSANLRGRGLFDN 176 >C3BME2.1 C3BME2_9BACI DinB Length = 176 Score = 160 bits (405), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 77/150 (51%), Positives = 107/150 (71%), Gaps = 12/150 (8%) Query: 1 VDETELIKRRTGGPGSIYYTLFHIVECEYSWISALQGKPMPEEPPFEDYIGVQKIRDYSA 60 + + EL+K+R GG GSI +TLFHIV+ EY WI L+G+P+PEEP FEDY +QK+++ SA Sbjct: 27 IPDEELLKKRVGGFGSILHTLFHIVDVEYMWILGLRGEPVPEEPLFEDYASLQKVKNLSA 86 Query: 61 RCHAEIAPFIYSWDSSMETRILSDQNAAGEWESFK------------YGEIMRHVLAHEI 108 + H ++ PF+ SW + M++R LS+ + E S + +GEI+RHV+ HEI Sbjct: 87 QYHEKVKPFVTSWTNEMDSRKLSETDFNEEPISSRDAPIRRRVIECTHGEIIRHVIVHEI 146 Query: 109 HHFGQLSIWSRELGKQPVTANLIRRGLFDN 138 HH GQLSIW+RE+GK+PV+ANL RGLFDN Sbjct: 147 HHIGQLSIWAREIGKEPVSANLRGRGLFDN 176 >B3ZYD9.1 B3ZYD9_BACCE YizA Length = 171 Score = 159 bits (402), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 77/150 (51%), Positives = 106/150 (70%), Gaps = 12/150 (8%) Query: 1 VDETELIKRRTGGPGSIYYTLFHIVECEYSWISALQGKPMPEEPPFEDYIGVQKIRDYSA 60 + + EL+K+R GG GSI +TLFHIV+ EY WI L+G P+PEEP FEDY +QK+++ SA Sbjct: 22 IPDEELLKKRVGGFGSILHTLFHIVDVEYMWILGLRGVPVPEEPLFEDYASLQKVKNLSA 81 Query: 61 RCHAEIAPFIYSWDSSMETRILSDQNAAGEWESFK------------YGEIMRHVLAHEI 108 + H ++ PF+ SW + M++R LS+ + E S + +GEI+RHV+ HEI Sbjct: 82 QYHEKVKPFVTSWTNEMDSRKLSETDFNEEPISSRDAPIRRRVIECTHGEIIRHVIVHEI 141 Query: 109 HHFGQLSIWSRELGKQPVTANLIRRGLFDN 138 HH GQLSIW+RE+GK+PV+ANL RGLFDN Sbjct: 142 HHIGQLSIWAREIGKEPVSANLRGRGLFDN 171 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 924,141,874 Number of extensions: 35797017 Number of successful extensions: 70924 Number of sequences better than 1.0e-05: 86 Number of HSP's gapped: 70876 Number of HSP's successfully gapped: 86 Length of query: 138 Length of database: 3,060,696,203 Length adjustment: 102 Effective length of query: 36 Effective length of database: 2,099,752,673 Effective search space: 75591096228 Effective search space used: 75591096228 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)