BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0024.p (443 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DJC1.1 B1DJC1_9BACL Pyrimidine-nucleoside phosphorylase EC=2.4... 592 e-167 A0PYX8.1 A0PYX8_CLONN Pyrimidine-nucleoside phosphorylase 561 e-158 B1B762.1 B1B762_CLOBO Pyrimidine-nucleoside phosphorylase EC=2.4... 549 e-154 B7GKG3.1 B7GKG3_ANOFW Pyrimidine-nucleoside phosphorylase 543 e-152 P77836.1 PDP_BACST Pyrimidine-nucleoside phosphorylase EC=2.4.2.2 543 e-152 >B1DJC1.1 B1DJC1_9BACL Pyrimidine-nucleoside phosphorylase EC=2.4.2.4 Length = 442 Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust. Identities = 304/443 (68%), Positives = 362/443 (81%), Gaps = 1/443 (0%) Query: 1 MRAVDLIQKKRDGGELSREEIAYLIQGYSKGEIPDYQISAWAMAVYFQGMNARETGDLTL 60 MRAVDLIQKKRDGGEL+ +E+ +L+ GY G+IPDYQ+SAWAMAV F+GM ET LTL Sbjct: 1 MRAVDLIQKKRDGGELTAKELTFLVDGYCDGDIPDYQMSAWAMAVLFRGMTPAETAALTL 60 Query: 61 EMAMSGDQVDLSPIAGIKVDKHSTGGVGDKTTVVLAPLVASAGVPVAKMSGRGLGHTGGT 120 MA SGDQVDL+PIAG+KVDKHSTGGVGDKTT+++APLVAS GVPVAKMSGRGLGHTGGT Sbjct: 61 AMANSGDQVDLAPIAGVKVDKHSTGGVGDKTTLIIAPLVASVGVPVAKMSGRGLGHTGGT 120 Query: 121 LDKLESISGFSVEMDRERFFTQVGEIGAAVIGQSGNITPADKKLYALRDVTATVESIPLI 180 +DKLESI+GF E+ RE+F QV E+G +VIGQSGN+ PADKKLYALRDVTATVESIPLI Sbjct: 121 IDKLESIAGFQTELTREKFLEQVNELGLSVIGQSGNLAPADKKLYALRDVTATVESIPLI 180 Query: 181 ASSVMSKKIAAGADAIVLDVKTGSGAFMKTLDDSIALAQAMVDIGTHLGRNTVAVISDMG 240 ASSVMSKKIAAGADAIVLDVKTGSGAFMKT+DDS LAQAMVDIGT +GR T AVISDM Sbjct: 181 ASSVMSKKIAAGADAIVLDVKTGSGAFMKTVDDSEKLAQAMVDIGTKVGRQTAAVISDMD 240 Query: 241 QPLGYGIGNALEIKEGIETLKGQGPADLEEVCLILGSQMLVLGGKAKDETEARAILKSHI 300 QPLG+ IGNALE++E IETL+G GPADL E+CL LG+ M+VLGGKA EA+ +L+S + Sbjct: 241 QPLGFAIGNALEVREAIETLQGNGPADLTELCLTLGAHMVVLGGKASTVAEAKGLLQSQL 300 Query: 301 ADGSALAKFKQIVAAQGGDITQVESPGTLPSARTFIEVKAVTAGYVESIQAENIGIAAML 360 A+G ALAKFKQ V+AQGGD++ V+ LP A EVKA AG++ +I AE +GIAAML Sbjct: 301 ANGEALAKFKQFVSAQGGDVSVVDDLDRLPQAAEQAEVKAAAAGFIAAIDAEELGIAAML 360 Query: 361 LGAGRETKESAIDLAVGIQLSKKVGDAVAAGETIAVLHVNDAGADKVQEAEAKVLEAYLI 420 LGAGR TK+++ID +VGI + KKVGDAV+ G+T+AVLH A V+E AKV EAY I Sbjct: 361 LGAGRATKDASIDYSVGITIRKKVGDAVSEGDTLAVLHTR-AQDPAVEEVIAKVREAYTI 419 Query: 421 SAEPVPPQPLVFALVTKDGVTRY 443 +A+ +PL+ ++VT +G RY Sbjct: 420 AADKPEERPLLLSVVTAEGTKRY 442 >A0PYX8.1 A0PYX8_CLONN Pyrimidine-nucleoside phosphorylase Length = 441 Score = 561 bits (1445), Expect = e-158, Method: Compositional matrix adjust. Identities = 281/443 (63%), Positives = 341/443 (76%), Gaps = 2/443 (0%) Query: 1 MRAVDLIQKKRDGGELSREEIAYLIQGYSKGEIPDYQISAWAMAVYFQGMNARETGDLTL 60 MR DLI KKRDGGEL+ EEI + + G++KGEIPDYQ+SA MA+YFQ MN RET DLT Sbjct: 1 MRMYDLIMKKRDGGELTTEEIKFFVDGFTKGEIPDYQVSAMMMAIYFQKMNKRETADLTR 60 Query: 61 EMAMSGDQVDLSPIAGIKVDKHSTGGVGDKTTVVLAPLVASAGVPVAKMSGRGLGHTGGT 120 M SG+ +DLS I GIKVDKHSTGGVGD TT+VLAPLVA+ GVPVAKMSGRGLGHTGGT Sbjct: 61 AMFESGEVIDLSAINGIKVDKHSTGGVGDTTTIVLAPLVAAVGVPVAKMSGRGLGHTGGT 120 Query: 121 LDKLESISGFSVEMDRERFFTQVGEIGAAVIGQSGNITPADKKLYALRDVTATVESIPLI 180 LDKLES G SVEM E+F V ++ AV GQ+ N+ PADKKLYALRDVTATV+++ LI Sbjct: 121 LDKLESFPGLSVEMPIEKFINNVNKLKIAVAGQTANLAPADKKLYALRDVTATVDNMSLI 180 Query: 181 ASSVMSKKIAAGADAIVLDVKTGSGAFMKTLDDSIALAQAMVDIGTHLGRNTVAVISDMG 240 ASS+MSKKIA+GADAIVLDVKTGSGAFMKT ++S ALAQ MVDIG H+GRNT+ VI+DM Sbjct: 181 ASSIMSKKIASGADAIVLDVKTGSGAFMKTEENSFALAQEMVDIGNHVGRNTIGVITDMD 240 Query: 241 QPLGYGIGNALEIKEGIETLKGQGPADLEEVCLILGSQMLVLGGKAKDETEARAILKSHI 300 QPLGY +GNALEIKE I+TLKG+GP DL E+CL LGS M+VLGGKAKD EARA+L+ I Sbjct: 241 QPLGYAVGNALEIKEAIDTLKGEGPEDLTELCLTLGSHMVVLGGKAKDAKEARAMLEEVI 300 Query: 301 ADGSALAKFKQIVAAQGGDITQVESPGTLPSARTFIEVKAVTAGYVESIQAENIGIAAML 360 +G + K K+ VAAQGG+ V+ LPSA V A GYV++I+A+++GIAA++ Sbjct: 301 KNGKGIEKLKEFVAAQGGNPNSVDDTSLLPSASIVEPVLATEDGYVKAIKADDVGIAALV 360 Query: 361 LGAGRETKESAIDLAVGIQLSKKVGDAVAAGETIAVLHVNDAGADKVQEAEAKVLEAYLI 420 LGAGRETKES IDL VG+ L KK+GD V GE IA ++ ND G K +E+E ++ AY Sbjct: 361 LGAGRETKESEIDLGVGLVLHKKIGDFVKKGEAIATIYANDEG--KQKESEKRLRAAYTF 418 Query: 421 SAEPVPPQPLVFALVTKDGVTRY 443 E V + L+ +VTKDG+ ++ Sbjct: 419 VGEKVETKKLIRGIVTKDGIEKF 441 >B1B762.1 B1B762_CLOBO Pyrimidine-nucleoside phosphorylase EC=2.4.2.2 Length = 442 Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust. Identities = 274/443 (61%), Positives = 341/443 (76%), Gaps = 2/443 (0%) Query: 1 MRAVDLIQKKRDGGELSREEIAYLIQGYSKGEIPDYQISAWAMAVYFQGMNARETGDLTL 60 MR DLI KKRDG EL+ EEI + + G++KGEIPDYQ+SA MA+YFQ MN RET DLT Sbjct: 1 MRMYDLIMKKRDGMELTTEEIRFFVDGFTKGEIPDYQVSAMMMAIYFQKMNKRETADLTR 60 Query: 61 EMAMSGDQVDLSPIAGIKVDKHSTGGVGDKTTVVLAPLVASAGVPVAKMSGRGLGHTGGT 120 M SG+ +DLS I GIKVDKHSTGGVGD TT+VLAPLVA+ GVPVAKMSGRGLGHTGGT Sbjct: 61 AMFESGEVIDLSAINGIKVDKHSTGGVGDTTTIVLAPLVAAVGVPVAKMSGRGLGHTGGT 120 Query: 121 LDKLESISGFSVEMDRERFFTQVGEIGAAVIGQSGNITPADKKLYALRDVTATVESIPLI 180 LDKLES G S+EM E+F V +I AV GQ+ N+ PADKKLYALRDVTATV+++ LI Sbjct: 121 LDKLESFPGLSIEMPIEKFIHNVNDIKIAVAGQTANLAPADKKLYALRDVTATVDNMSLI 180 Query: 181 ASSVMSKKIAAGADAIVLDVKTGSGAFMKTLDDSIALAQAMVDIGTHLGRNTVAVISDMG 240 A+S+MSKKIA+GADAIVLDVKTGSGAFMKT ++S ALA+ MVDIG H+GRNT+ V++DM Sbjct: 181 AASIMSKKIASGADAIVLDVKTGSGAFMKTEENSFALAREMVDIGNHVGRNTIGVVTDMD 240 Query: 241 QPLGYGIGNALEIKEGIETLKGQGPADLEEVCLILGSQMLVLGGKAKDETEARAILKSHI 300 QPLGY IGNALEIKE I+TLKG+GP DL E+CL LGS M+VLGGKA++ +EAR +L+ I Sbjct: 241 QPLGYAIGNALEIKEAIDTLKGEGPEDLTELCLTLGSHMIVLGGKAENASEARVMLEEVI 300 Query: 301 ADGSALAKFKQIVAAQGGDITQVESPGTLPSARTFIEVKAVTAGYVESIQAENIGIAAML 360 +G + K K+ VAAQGG+ V+ LPSA V A GYV++I+A+++GIAA++ Sbjct: 301 KNGKGIEKLKEFVAAQGGNPDSVDDTSLLPSASIVEPVLATEDGYVKAIKADDVGIAALV 360 Query: 361 LGAGRETKESAIDLAVGIQLSKKVGDAVAAGETIAVLHVNDAGADKVQEAEAKVLEAYLI 420 LGAGRETKES IDL VG+ L KK+GD V GE IA ++ ND +K +E+E ++ AY Sbjct: 361 LGAGRETKESEIDLGVGLILHKKIGDFVKKGEAIATIYAND--TNKQKESEKRLRAAYTF 418 Query: 421 SAEPVPPQPLVFALVTKDGVTRY 443 + E V + L+ +VTKDG+ ++ Sbjct: 419 TNEKVEVKHLIKGIVTKDGIEKF 441 >B7GKG3.1 B7GKG3_ANOFW Pyrimidine-nucleoside phosphorylase Length = 433 Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust. Identities = 274/432 (63%), Positives = 333/432 (77%), Gaps = 3/432 (0%) Query: 1 MRAVDLIQKKRDGGELSREEIAYLIQGYSKGEIPDYQISAWAMAVYFQGMNARETGDLTL 60 MR VDLI+KKRD L++EEI ++I+GY+KG+IPDYQ+SA AMA++F+GMN ET +LT+ Sbjct: 1 MRMVDLIEKKRDSHALTKEEIQFIIEGYTKGDIPDYQMSALAMAIFFRGMNEEETAELTM 60 Query: 61 EMAMSGDQVDLSPIAGIKVDKHSTGGVGDKTTVVLAPLVASAGVPVAKMSGRGLGHTGGT 120 M SGD +DLS I GIKVDKHSTGGVGD TT+VL PLVAS GVPVAKMSGRGLGHTGGT Sbjct: 61 AMVHSGDTIDLSRIEGIKVDKHSTGGVGDTTTLVLGPLVASVGVPVAKMSGRGLGHTGGT 120 Query: 121 LDKLESISGFSVEMDRERFFTQVGEIGAAVIGQSGNITPADKKLYALRDVTATVESIPLI 180 +DKLES+ GF VE+ + F V + AV+GQSGN+TPADKKLYALRDVTATV SIPLI Sbjct: 121 IDKLESVPGFHVEISNDEFIDLVNKNKIAVVGQSGNLTPADKKLYALRDVTATVNSIPLI 180 Query: 181 ASSVMSKKIAAGADAIVLDVKTGSGAFMKTLDDSIALAQAMVDIGTHLGRNTVAVISDMG 240 ASS+MSKKIAAGADAIVLDVKTG+GAFMK L+D+ ALA+AMVDIG +GR T+A+ISDM Sbjct: 181 ASSIMSKKIAAGADAIVLDVKTGAGAFMKDLNDAKALAKAMVDIGNRVGRKTMAIISDMS 240 Query: 241 QPLGYGIGNALEIKEGIETLKGQGPADLEEVCLILGSQMLVLGGKAKDETEARAILKSHI 300 QPLGY IGNALE+KE I+TLKG+GP DL+E+CL+LGS M+ L KA EAR +L+ + Sbjct: 241 QPLGYAIGNALEVKEAIDTLKGEGPEDLQELCLVLGSHMVYLAEKASSLEEARHMLEKAM 300 Query: 301 ADGSALAKFKQIVAAQGGDITQVESPGTLPSARTFIEVKAVTAGYVESIQAENIGIAAML 360 DGSAL FK +AAQGGD + V+ P LP A+ IE++A GYV I A+ +G AAM Sbjct: 301 KDGSALQTFKTFLAAQGGDASVVDDPSKLPQAKYVIELEAKEDGYVSEIVADAVGTAAMW 360 Query: 361 LGAGRETKESAIDLAVGIQLSKKVGDAVAAGETIAVLHVNDAGADKVQEAEAKVLEAYLI 420 LGAGR TKES IDLAVG+ L KKVGDAV GE++ ++ N D V++ K+ E I Sbjct: 361 LGAGRATKESTIDLAVGLVLRKKVGDAVKKGESLVTIYSNREQIDDVKQ---KLYENIRI 417 Query: 421 SAEPVPPQPLVF 432 SA PV L++ Sbjct: 418 SATPVQAPTLIY 429 >P77836.1 PDP_BACST Pyrimidine-nucleoside phosphorylase EC=2.4.2.2 Length = 433 Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust. Identities = 274/432 (63%), Positives = 332/432 (76%), Gaps = 3/432 (0%) Query: 1 MRAVDLIQKKRDGGELSREEIAYLIQGYSKGEIPDYQISAWAMAVYFQGMNARETGDLTL 60 MR VDLI+KKRDG L++EEI ++I+GY+KG+IPDYQ+SA AMA++F+GMN ET +LT+ Sbjct: 1 MRMVDLIEKKRDGHALTKEEIQFIIEGYTKGDIPDYQMSALAMAIFFRGMNEEETAELTM 60 Query: 61 EMAMSGDQVDLSPIAGIKVDKHSTGGVGDKTTVVLAPLVASAGVPVAKMSGRGLGHTGGT 120 M SGD +DLS I GIKVDKHSTGGVGD TT+VL PLVAS GVPVAKMSGRGLGHTGGT Sbjct: 61 AMVHSGDTIDLSRIEGIKVDKHSTGGVGDTTTLVLGPLVASVGVPVAKMSGRGLGHTGGT 120 Query: 121 LDKLESISGFSVEMDRERFFTQVGEIGAAVIGQSGNITPADKKLYALRDVTATVESIPLI 180 +DKLES+ GF VE+ + F V + AV+GQSGN+TPADKKLYALRDVTATV SIPLI Sbjct: 121 IDKLESVPGFHVEITNDEFIDLVNKNKIAVVGQSGNLTPADKKLYALRDVTATVNSIPLI 180 Query: 181 ASSVMSKKIAAGADAIVLDVKTGSGAFMKTLDDSIALAQAMVDIGTHLGRNTVAVISDMG 240 ASS+MSKKIAAGADAIVLDVKTG GAFMK L+D+ ALA+AMVDIG +GR T+A+ISDM Sbjct: 181 ASSIMSKKIAAGADAIVLDVKTGVGAFMKDLNDAKALAKAMVDIGNRVGRKTMAIISDMS 240 Query: 241 QPLGYGIGNALEIKEGIETLKGQGPADLEEVCLILGSQMLVLGGKAKDETEARAILKSHI 300 QPLGY IGNALE+KE I+TLKG+GP D +E+CL+LGS M+ L KA EAR +L+ + Sbjct: 241 QPLGYAIGNALEVKEAIDTLKGEGPEDFQELCLVLGSHMVYLAEKASSLEEARHMLEKAM 300 Query: 301 ADGSALAKFKQIVAAQGGDITQVESPGTLPSARTFIEVKAVTAGYVESIQAENIGIAAML 360 DGSAL FK +AAQGGD + V+ P LP A+ IE++A GYV I A+ +G AAM Sbjct: 301 KDGSALQTFKTFLAAQGGDASVVDDPSKLPQAKYIIELEAKEDGYVSEIVADAVGTAAMW 360 Query: 361 LGAGRETKESAIDLAVGIQLSKKVGDAVAAGETIAVLHVNDAGADKVQEAEAKVLEAYLI 420 LGAGR TKES IDLAVG+ L KKVGDAV GE++ ++ N D V++ K+ E I Sbjct: 361 LGAGRATKESTIDLAVGLVLRKKVGDAVKKGESLVTIYSNREQVDDVKQ---KLYENIRI 417 Query: 421 SAEPVPPQPLVF 432 SA PV L++ Sbjct: 418 SATPVQAPTLIY 429 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.132 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,489,440,856 Number of extensions: 104120510 Number of successful extensions: 251035 Number of sequences better than 1.0e-05: 956 Number of HSP's gapped: 249405 Number of HSP's successfully gapped: 956 Length of query: 443 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 304 Effective length of database: 1,751,175,118 Effective search space: 532357235872 Effective search space used: 532357235872 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)