BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0023.p (291 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q9KCN7.1 Q9KCN7_BACHD Purine nucleoside phosphorylase 318 3e-85 A9VFJ1.1 A9VFJ1_BACWK Purine nucleoside phosphorylase I, inosine... 299 2e-79 C3AAD0.1 C3AAD0_BACMY Purine nucleoside phosphorylase 299 2e-79 C2XYQ6.1 C2XYQ6_BACCE Purine nucleoside phosphorylase 299 2e-79 C2SPN6.1 C2SPN6_BACCE Purine nucleoside phosphorylase 299 2e-79 >Q9KCN7.1 Q9KCN7_BACHD Purine nucleoside phosphorylase Length = 275 Score = 318 bits (815), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 158/275 (57%), Positives = 201/275 (73%), Gaps = 7/275 (2%) Query: 16 QVKEAAEYIQAKLGAYAPTXXXXXXXXXXXXXXQIEDAVYLPYEEIPHFPRSTVEGHAGR 75 +VK++AEY+ K+ P +IE+AV++PYE+IP+FP STVEGHAG+ Sbjct: 7 KVKQSAEYLLGKI-KNKPAIGLILGSGLGELANEIEEAVHIPYEQIPNFPVSTVEGHAGQ 65 Query: 76 FVIGKLEGKDVMIMQGRFHYYEGYAMRKVVLPVYVMAKLGIGTLVITNAGGGMNRSFKAG 135 VIG L GK+V+ MQGRFHYYEGY M++V PV VM ++G+ +V+TNA GGMN++F G Sbjct: 66 LVIGTLHGKNVVAMQGRFHYYEGYTMQEVTFPVRVMKEIGVELIVVTNACGGMNKNFAPG 125 Query: 136 DLMLITDHLNMTGDNPLIGPNDPELGVRFPDMSRAYDPEYIALAKKLAGEVKGVNGETLV 195 DLM+ITDHLNMTGDNPLIGPN E G RFPDMS AY PE + ++ A + + Sbjct: 126 DLMIITDHLNMTGDNPLIGPNVEEWGPRFPDMSHAYTPELVEFVEETANRLD------IK 179 Query: 196 LQEGVYAGISGPTYETPAELKMLAALGGDAVGMSTVPEVIVARHSRLRVLGITCITDMAI 255 +Q+GVYAGI+GPTY T AEL ML LGGD +GMSTVPEVIVARH+ ++V+GI+CITDMAI Sbjct: 180 VQKGVYAGITGPTYMTGAELIMLRNLGGDVIGMSTVPEVIVARHAGMKVIGISCITDMAI 239 Query: 256 GDELEPLTHEQVVQVANLTKPKFIGLVRAFVREVQ 290 G+E+ +THE+VV VAN TKPKFI LV+ V V Sbjct: 240 GEEIAGITHEEVVAVANKTKPKFIKLVKEIVANVN 274 >A9VFJ1.1 A9VFJ1_BACWK Purine nucleoside phosphorylase I, inosine and guanosine-specific Length = 273 Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 140/242 (57%), Positives = 186/242 (76%), Gaps = 6/242 (2%) Query: 49 QIEDAVYLPYEEIPHFPRSTVEGHAGRFVIGKLEGKDVMIMQGRFHYYEGYAMRKVVLPV 108 +IE+AV +PY EIP FP STVEGHAG+ V G L+G V+ MQGRFH+YEGY M+KV PV Sbjct: 37 EIENAVTVPYSEIPEFPVSTVEGHAGQLVFGTLQGVTVVAMQGRFHFYEGYDMQKVTFPV 96 Query: 109 YVMAKLGIGTLVITNAGGGMNRSFKAGDLMLITDHLNMTGDNPLIGPNDPELGVRFPDMS 168 VM +LG+ T+V+TNA GG+N SF+ GDLMLI+DH+N G NPLIGPND E+GVRFPDMS Sbjct: 97 RVMKELGVETVVVTNAAGGVNTSFEPGDLMLISDHINFMGTNPLIGPNDSEMGVRFPDMS 156 Query: 169 RAYDPEYIALAKKLAGEVKGVNGETLVLQEGVYAGISGPTYETPAELKMLAALGGDAVGM 228 +Y PE +AK++A ++ + +QEGVY G++GP YETPAE++ML LGGDAVGM Sbjct: 157 TSYTPELREMAKQVAADLN------IKVQEGVYVGMTGPVYETPAEIRMLRTLGGDAVGM 210 Query: 229 STVPEVIVARHSRLRVLGITCITDMAIGDELEPLTHEQVVQVANLTKPKFIGLVRAFVRE 288 STVPEVIVARH+ ++VLGI+CI++MA G +PL H++V++ K F+ LV+A V++ Sbjct: 211 STVPEVIVARHAGMKVLGISCISNMAAGILDQPLHHDEVIETTERVKANFLALVKAIVKQ 270 Query: 289 VQ 290 ++ Sbjct: 271 MK 272 >C3AAD0.1 C3AAD0_BACMY Purine nucleoside phosphorylase Length = 273 Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 140/242 (57%), Positives = 186/242 (76%), Gaps = 6/242 (2%) Query: 49 QIEDAVYLPYEEIPHFPRSTVEGHAGRFVIGKLEGKDVMIMQGRFHYYEGYAMRKVVLPV 108 +IE+AV +PY EIP FP STVEGHAG+ V G L+G V+ MQGRFH+YEGY M+KV PV Sbjct: 37 EIENAVTVPYSEIPEFPVSTVEGHAGQLVFGTLQGVTVVAMQGRFHFYEGYDMQKVTFPV 96 Query: 109 YVMAKLGIGTLVITNAGGGMNRSFKAGDLMLITDHLNMTGDNPLIGPNDPELGVRFPDMS 168 VM +LG+ T+V+TNA GG+N SF+ GDLMLI+DH+N G NPLIGPND E+GVRFPDMS Sbjct: 97 RVMKELGVETVVVTNAAGGVNTSFEPGDLMLISDHINFMGTNPLIGPNDSEMGVRFPDMS 156 Query: 169 RAYDPEYIALAKKLAGEVKGVNGETLVLQEGVYAGISGPTYETPAELKMLAALGGDAVGM 228 +Y PE +AK++A ++ + +QEGVY G++GP YETPAE++ML LGGDAVGM Sbjct: 157 TSYTPELREMAKQVAADLN------IKVQEGVYVGMTGPVYETPAEIRMLRTLGGDAVGM 210 Query: 229 STVPEVIVARHSRLRVLGITCITDMAIGDELEPLTHEQVVQVANLTKPKFIGLVRAFVRE 288 STVPEVIVARH+ ++VLGI+CI++MA G +PL H++V++ K F+ LV+A V++ Sbjct: 211 STVPEVIVARHAGMKVLGISCISNMAAGILDQPLHHDEVIETTERVKANFLALVKAIVKQ 270 Query: 289 VQ 290 ++ Sbjct: 271 MK 272 >C2XYQ6.1 C2XYQ6_BACCE Purine nucleoside phosphorylase Length = 273 Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 140/242 (57%), Positives = 186/242 (76%), Gaps = 6/242 (2%) Query: 49 QIEDAVYLPYEEIPHFPRSTVEGHAGRFVIGKLEGKDVMIMQGRFHYYEGYAMRKVVLPV 108 +IE+AV +PY EIP FP STVEGHAG+ V G L+G V+ MQGRFH+YEGY M+KV PV Sbjct: 37 EIENAVTVPYSEIPEFPVSTVEGHAGQLVFGTLQGVTVVAMQGRFHFYEGYDMQKVTFPV 96 Query: 109 YVMAKLGIGTLVITNAGGGMNRSFKAGDLMLITDHLNMTGDNPLIGPNDPELGVRFPDMS 168 VM +LG+ T+V+TNA GG+N SF+ GDLMLI+DH+N G NPLIGPND E+GVRFPDMS Sbjct: 97 RVMKELGVETVVVTNAAGGVNTSFEPGDLMLISDHINFMGTNPLIGPNDSEMGVRFPDMS 156 Query: 169 RAYDPEYIALAKKLAGEVKGVNGETLVLQEGVYAGISGPTYETPAELKMLAALGGDAVGM 228 +Y PE +AK++A ++ + +QEGVY G++GP YETPAE++ML LGGDAVGM Sbjct: 157 TSYTPELREMAKQVAADLN------IKVQEGVYVGMTGPVYETPAEIRMLRTLGGDAVGM 210 Query: 229 STVPEVIVARHSRLRVLGITCITDMAIGDELEPLTHEQVVQVANLTKPKFIGLVRAFVRE 288 STVPEVIVARH+ ++VLGI+CI++MA G +PL H++V++ K F+ LV+A V++ Sbjct: 211 STVPEVIVARHAGMKVLGISCISNMAAGILDQPLHHDEVIETTERVKANFLALVKAIVKQ 270 Query: 289 VQ 290 ++ Sbjct: 271 MK 272 >C2SPN6.1 C2SPN6_BACCE Purine nucleoside phosphorylase Length = 273 Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 140/242 (57%), Positives = 186/242 (76%), Gaps = 6/242 (2%) Query: 49 QIEDAVYLPYEEIPHFPRSTVEGHAGRFVIGKLEGKDVMIMQGRFHYYEGYAMRKVVLPV 108 +IE+AV +PY EIP FP STVEGHAG+ V G L+G V+ MQGRFH+YEGY M+KV PV Sbjct: 37 EIENAVTVPYSEIPEFPVSTVEGHAGQLVFGTLQGVTVVAMQGRFHFYEGYDMQKVTFPV 96 Query: 109 YVMAKLGIGTLVITNAGGGMNRSFKAGDLMLITDHLNMTGDNPLIGPNDPELGVRFPDMS 168 VM +LG+ T+V+TNA GG+N SF+ GDLMLI+DH+N G NPLIGPND E+GVRFPDMS Sbjct: 97 RVMKELGVETVVVTNAAGGVNTSFEPGDLMLISDHINFMGTNPLIGPNDSEMGVRFPDMS 156 Query: 169 RAYDPEYIALAKKLAGEVKGVNGETLVLQEGVYAGISGPTYETPAELKMLAALGGDAVGM 228 +Y PE +AK++A ++ + +QEGVY G++GP YETPAE++ML LGGDAVGM Sbjct: 157 TSYTPELREMAKQVAADLN------IKVQEGVYVGMTGPVYETPAEIRMLRTLGGDAVGM 210 Query: 229 STVPEVIVARHSRLRVLGITCITDMAIGDELEPLTHEQVVQVANLTKPKFIGLVRAFVRE 288 STVPEVIVARH+ ++VLGI+CI++MA G +PL H++V++ K F+ LV+A V++ Sbjct: 211 STVPEVIVARHAGMKVLGISCISNMAAGILDQPLHHDEVIETTERVKANFLALVKAIVKQ 270 Query: 289 VQ 290 ++ Sbjct: 271 MK 272 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.138 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,680,128,510 Number of extensions: 69787321 Number of successful extensions: 166445 Number of sequences better than 1.0e-05: 923 Number of HSP's gapped: 165222 Number of HSP's successfully gapped: 924 Length of query: 291 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 157 Effective length of database: 1,798,280,193 Effective search space: 282329990301 Effective search space used: 282329990301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)