BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0021.p (410 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DJC4.1 B1DJC4_9BACL Phosphopentomutase EC=5.4.2.7 539 e-151 C2ZTW2.1 C2ZTW2_BACCE Phosphopentomutase 484 e-135 C2ZCD2.1 C2ZCD2_BACCE Phosphopentomutase 484 e-135 A7GSB1.1 A7GSB1_BACCN Phosphopentomutase EC=5.4.2.7 482 e-134 B7IWK1.1 DEOB_BACC2 Phosphopentomutase EC=5.4.2.7 481 e-134 >B1DJC4.1 B1DJC4_9BACL Phosphopentomutase EC=5.4.2.7 Length = 394 Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust. Identities = 265/389 (68%), Positives = 293/389 (75%) Query: 22 FKRIGFIVLDSVGIGEAPDAEGFGDKGAHTLGHILERVPGLKLPNLQQXXXXXXXXXXXX 81 F RI IVLDSVGIGE PDA FGD G+HTLGHI+ERVP ++LPNL++ Sbjct: 3 FDRIAVIVLDSVGIGELPDAPSFGDSGSHTLGHIIERVPSVQLPNLRRWGLDRIANLADW 62 Query: 82 XXXXXXTGYYGKMQEVSVGKDTMTGHWELMGLKIEIPFNTYPDGFPAELIEKFEAATGRK 141 YYGKM EVSVGKDTMTGHWELMGL I +PF T+P+GFPAELI+ FE TGRK Sbjct: 63 KPEGEAAAYYGKMAEVSVGKDTMTGHWELMGLNITVPFQTFPEGFPAELIQAFEERTGRK 122 Query: 142 VIGNKPASGTEILVEYGEEQMKTGAWIVYTSADSVFQLAAHEDIIPLEELYRACTIAREL 201 VIGNKPASGTEIL E G EQM+TGAWIVYTSADSVFQ+AAHE+IIPLEELYR C IAREL Sbjct: 123 VIGNKPASGTEILDELGAEQMETGAWIVYTSADSVFQIAAHEEIIPLEELYRGCEIAREL 182 Query: 202 TMAPEFSVGRVIARPYIGEPGKFVRTPNRHDYAVKPPEPTVMNALKDIGKDVIAVGKIND 261 TM F+VGRVIARPY+G PG F RTPNRHDYAVKPPE TV+N LKD D IA+GKIND Sbjct: 183 TMDERFAVGRVIARPYVGSPGAFKRTPNRHDYAVKPPEATVLNLLKDNEFDTIAIGKIND 242 Query: 262 IFTGEGVTAAYPTKSNEHGIETTIAELRKPFDGFLFTNLVDFDSLYGHRRDPEGYGHALE 321 IF GEG+TA TKSN GI TI L++PF G LFTNLVDFDSLYGHRRDPEGY ALE Sbjct: 243 IFDGEGITATTSTKSNADGIARTIEALKQPFKGLLFTNLVDFDSLYGHRRDPEGYAKALE 302 Query: 322 VFDQAXXXXXXXXXXXXXXIISADHGNDPIHSGTDHTREYVPLLVYSPRFKHPDSLGIRQ 381 FDQA I++ADHGNDPIH GTDHTREYVP+L+YSP F +P+ L R Sbjct: 303 EFDQAVPELESTLGERDLLIVTADHGNDPIHPGTDHTREYVPILLYSPAFANPERLDARA 362 Query: 382 TFSDVAATIADNFGAKAPQYGTSFLAELK 410 TFSD+ ATIADNFG P G SFL+ LK Sbjct: 363 TFSDLGATIADNFGVPTPPNGASFLSLLK 391 >C2ZTW2.1 C2ZTW2_BACCE Phosphopentomutase Length = 394 Score = 484 bits (1246), Expect = e-135, Method: Compositional matrix adjust. Identities = 232/393 (59%), Positives = 287/393 (73%), Gaps = 1/393 (0%) Query: 19 MSSFKRIGFIVLDSVGIGEAPDAEGFGDKGAHTLGHILERVPGLKLPNLQQXXXXXXXXX 78 M+ +KRI +V+DSVGIGEAPDAE FGD G+ T+GHI E + GL++PN+ + Sbjct: 1 MNKYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLQMPNMVKLGLGNIREM 60 Query: 79 XXXXXXXXXTGYYGKMQEVSVGKDTMTGHWELMGLKIEIPFNTYPDGFPAELIEKFEAAT 138 GYY KMQE S GKDTMTGHWE+MGL I+ PF +P+GFP EL+++ E T Sbjct: 61 KGISKVEKPLGYYTKMQEKSTGKDTMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKT 120 Query: 139 GRKVIGNKPASGTEILVEYGEEQMKTGAWIVYTSADSVFQLAAHEDIIPLEELYRACTIA 198 GRK+IGNKPASGTEIL E G+EQM+TG+ IVYTSADSV Q+AAHE+++PL+ELY+ C IA Sbjct: 121 GRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQIAAHEEVVPLDELYKICKIA 180 Query: 199 RELTMAPEFSVGRVIARPYIGEPGKFVRTPNRHDYAVKPPEPTVMNALKDIGKDVIAVGK 258 RELT+ ++ VGRVIARP++GEPGKF RTPNRHDYA+KP TVMN LKD DVIA+GK Sbjct: 181 RELTLDEKYMVGRVIARPFVGEPGKFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGK 240 Query: 259 INDIFTGEGVTAAYPTKSNEHGIETTIAELRKPFDGFLFTNLVDFDSLYGHRRDPEGYGH 318 I+DI+ GEGVT + TKSN G++ + L F G F NLVDFD+L+GHRRDP+GYG Sbjct: 241 ISDIYDGEGVTESLRTKSNMDGMDKLVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGE 300 Query: 319 ALEVFDQAXXXXXXXXXXXXXXIISADHGNDPIHSGTDHTREYVPLLVYSPRFKH-PDSL 377 AL+ +D +I+ADHGNDP+H GTDHTREYVPLL YSP K L Sbjct: 301 ALQEYDARLPEVFEKLKEDDLLLITADHGNDPVHPGTDHTREYVPLLAYSPSMKEGGQEL 360 Query: 378 GIRQTFSDVAATIADNFGAKAPQYGTSFLAELK 410 +RQTF+D+ AT+A+NFG K P+YGTSFL ELK Sbjct: 361 ALRQTFADIGATVAENFGVKMPEYGTSFLNELK 393 >C2ZCD2.1 C2ZCD2_BACCE Phosphopentomutase Length = 394 Score = 484 bits (1246), Expect = e-135, Method: Compositional matrix adjust. Identities = 232/393 (59%), Positives = 287/393 (73%), Gaps = 1/393 (0%) Query: 19 MSSFKRIGFIVLDSVGIGEAPDAEGFGDKGAHTLGHILERVPGLKLPNLQQXXXXXXXXX 78 M+ +KRI +V+DSVGIGEAPDAE FGD G+ T+GHI E + GL++PN+ + Sbjct: 1 MNKYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLQMPNMVKLGLGNIREM 60 Query: 79 XXXXXXXXXTGYYGKMQEVSVGKDTMTGHWELMGLKIEIPFNTYPDGFPAELIEKFEAAT 138 GYY KMQE S GKDTMTGHWE+MGL I+ PF +P+GFP EL+++ E T Sbjct: 61 KGISKVEKPLGYYTKMQEKSTGKDTMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKT 120 Query: 139 GRKVIGNKPASGTEILVEYGEEQMKTGAWIVYTSADSVFQLAAHEDIIPLEELYRACTIA 198 GRK+IGNKPASGTEIL E G+EQM+TG+ IVYTSADSV Q+AAHE+++PL+ELY+ C IA Sbjct: 121 GRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQIAAHEEVVPLDELYKICKIA 180 Query: 199 RELTMAPEFSVGRVIARPYIGEPGKFVRTPNRHDYAVKPPEPTVMNALKDIGKDVIAVGK 258 RELT+ ++ VGRVIARP++GEPGKF RTPNRHDYA+KP TVMN LKD DVIA+GK Sbjct: 181 RELTLDEKYMVGRVIARPFVGEPGKFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGK 240 Query: 259 INDIFTGEGVTAAYPTKSNEHGIETTIAELRKPFDGFLFTNLVDFDSLYGHRRDPEGYGH 318 I+DI+ GEGVT + TKSN G++ + L F G F NLVDFD+L+GHRRDP+GYG Sbjct: 241 ISDIYDGEGVTESLRTKSNMDGMDKLVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGE 300 Query: 319 ALEVFDQAXXXXXXXXXXXXXXIISADHGNDPIHSGTDHTREYVPLLVYSPRFKH-PDSL 377 AL+ +D +I+ADHGNDP+H GTDHTREYVPLL YSP K L Sbjct: 301 ALQEYDARLPEVFEKLKEDDLLLITADHGNDPVHPGTDHTREYVPLLAYSPSMKEGGQEL 360 Query: 378 GIRQTFSDVAATIADNFGAKAPQYGTSFLAELK 410 +RQTF+D+ AT+A+NFG K P+YGTSFL ELK Sbjct: 361 ALRQTFADIGATVAENFGVKMPEYGTSFLNELK 393 >A7GSB1.1 A7GSB1_BACCN Phosphopentomutase EC=5.4.2.7 Length = 395 Score = 482 bits (1240), Expect = e-134, Method: Compositional matrix adjust. Identities = 237/393 (60%), Positives = 283/393 (72%), Gaps = 1/393 (0%) Query: 19 MSSFKRIGFIVLDSVGIGEAPDAEGFGDKGAHTLGHILERVPGLKLPNLQQXXXXXXXXX 78 M +KRI +V+DSVGIGEAPDAE FGD GA TLGHI E + GL +PN+ + Sbjct: 2 MHKYKRIFLVVMDSVGIGEAPDAEKFGDVGADTLGHIAEHMNGLNMPNMVKLGLGNIREM 61 Query: 79 XXXXXXXXXTGYYGKMQEVSVGKDTMTGHWELMGLKIEIPFNTYPDGFPAELIEKFEAAT 138 GYY KMQE S GKDTMTGHWE+MGL I+ PF +P+GFP ELI++ EA T Sbjct: 62 KGISKVENPLGYYTKMQEKSTGKDTMTGHWEIMGLYIDKPFQVFPEGFPKELIDELEART 121 Query: 139 GRKVIGNKPASGTEILVEYGEEQMKTGAWIVYTSADSVFQLAAHEDIIPLEELYRACTIA 198 GRK+IGNKPASGT IL E G+EQM+TG+ IVYTSADSV Q+AAHE+++PLEELY C IA Sbjct: 122 GRKIIGNKPASGTAILDELGKEQMETGSLIVYTSADSVLQIAAHEEVVPLEELYNICKIA 181 Query: 199 RELTMAPEFSVGRVIARPYIGEPGKFVRTPNRHDYAVKPPEPTVMNALKDIGKDVIAVGK 258 RELT+ ++ VGRVIARP++GEPG F RTPNRHDYA+KP TVMN L+D DVIA+GK Sbjct: 182 RELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELQDNNYDVIAIGK 241 Query: 259 INDIFTGEGVTAAYPTKSNEHGIETTIAELRKPFDGFLFTNLVDFDSLYGHRRDPEGYGH 318 I+DI+ GEGVT A TKSN G++ I L F G F NLVDFD+++GHRRDP+GYG Sbjct: 242 ISDIYDGEGVTEALRTKSNMDGMDKLIDTLNMDFTGLSFLNLVDFDAMFGHRRDPKGYGE 301 Query: 319 ALEVFDQAXXXXXXXXXXXXXXIISADHGNDPIHSGTDHTREYVPLLVYSPRFKH-PDSL 377 AL+ +D II+ADHGNDPIH GTDHTREYVPLLVYSP K L Sbjct: 302 ALQEYDARLPEVFEKLKEDDLLIITADHGNDPIHHGTDHTREYVPLLVYSPSMKDGGQKL 361 Query: 378 GIRQTFSDVAATIADNFGAKAPQYGTSFLAELK 410 +RQTF+D+ AT+A+NFG P+YGTSFL ELK Sbjct: 362 PLRQTFADIGATVAENFGVNMPEYGTSFLKELK 394 >B7IWK1.1 DEOB_BACC2 Phosphopentomutase EC=5.4.2.7 Length = 394 Score = 481 bits (1239), Expect = e-134, Method: Compositional matrix adjust. Identities = 232/393 (59%), Positives = 286/393 (72%), Gaps = 1/393 (0%) Query: 19 MSSFKRIGFIVLDSVGIGEAPDAEGFGDKGAHTLGHILERVPGLKLPNLQQXXXXXXXXX 78 M+ +KRI +V+DSVGIGEAPDAE FGD G+ T+GHI E + GL++PN+ + Sbjct: 1 MNKYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLQMPNMVKLGLGNIREM 60 Query: 79 XXXXXXXXXTGYYGKMQEVSVGKDTMTGHWELMGLKIEIPFNTYPDGFPAELIEKFEAAT 138 GYY KMQE S GKDTMTGHWE+MGL I+ PF +P+GFP EL+++ E T Sbjct: 61 KGISKVEKPLGYYTKMQEKSTGKDTMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKT 120 Query: 139 GRKVIGNKPASGTEILVEYGEEQMKTGAWIVYTSADSVFQLAAHEDIIPLEELYRACTIA 198 GRK+IGNKPASGTEIL E G+EQM+TG+ IVYTSADSV Q+AAHE+++PL+ELY+ C IA Sbjct: 121 GRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQIAAHEEVVPLDELYKICKIA 180 Query: 199 RELTMAPEFSVGRVIARPYIGEPGKFVRTPNRHDYAVKPPEPTVMNALKDIGKDVIAVGK 258 RELT+ ++ VGRVIARP++GEPG F RTPNRHDYA+KP TVMN LKD DVIA+GK Sbjct: 181 RELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGK 240 Query: 259 INDIFTGEGVTAAYPTKSNEHGIETTIAELRKPFDGFLFTNLVDFDSLYGHRRDPEGYGH 318 I+DI+ GEGVT + TKSN G++ + L F G F NLVDFD+L+GHRRDP+GYG Sbjct: 241 ISDIYDGEGVTESLRTKSNMDGMDKLVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGE 300 Query: 319 ALEVFDQAXXXXXXXXXXXXXXIISADHGNDPIHSGTDHTREYVPLLVYSPRFKH-PDSL 377 AL+ +D +I+ADHGNDPIH GTDHTREYVPLL YSP K L Sbjct: 301 ALQEYDARLPEVFAKLQEDDLLLITADHGNDPIHPGTDHTREYVPLLAYSPSMKEGGQEL 360 Query: 378 GIRQTFSDVAATIADNFGAKAPQYGTSFLAELK 410 +RQTF+D+ AT+A+NFG K P+YGTSFL ELK Sbjct: 361 PLRQTFADIGATVAENFGVKMPEYGTSFLNELK 393 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.138 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,462,876,221 Number of extensions: 102551964 Number of successful extensions: 193484 Number of sequences better than 1.0e-05: 785 Number of HSP's gapped: 190100 Number of HSP's successfully gapped: 788 Length of query: 410 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 272 Effective length of database: 1,760,596,133 Effective search space: 478882148176 Effective search space used: 478882148176 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)